CmaCh09G000260.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G000260.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr09 : 137313 .. 137927 (+)
Sequence length	261

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCTGAAACAGTGGTCGGCACCTTCTCCATTTCTCTCTCGCCCTTTCTCCACAAAAAAGGAATTGAGAGCCGGTCATGTTACTTGTCCCCAGCGACAATATGTTTTTGAAATTCAAATTTATAAAGTTAGCAGCAGGAGGAGTCCCGCCTGTTGAAAAAAAAAAATCGGAACCCTTGAAGCTGAGGTTCTGGTTCTGAAGCCTTTCAATTTGTTTCCCCTTTTTGTTTTTCATGTCCGCTAATTTTCCTGTATTATTTGGTAGGTGTATTGGATTTTTTTGCTCATTTTCCCCCAATTTCTGTCTTATTCCTTTATTTGCAGTCTTTGTTTATTTATTTATTTGTATTTTTGGAGAATCTTTACTGTGAAATTCAAAATTGGAAAATAATTTCTTACTCAATGATGCGGGTTTTCTTCTTCCTCAGTGGCGGCTCTTAAGATGAGTTCAGTACAATCGCAACAGCCGGTTTTGCCGGGCATGCATTCGCCCGTTGGCACCGACGGCCTCTACAACCCCGTTGCCGCCGCCTCTCCCACCTACCAGCCCTCCATCGTCGGAGTTACTGGTAATGCTGGTGCCGGTGAATCTGCCCGTGAATCGTTGACATGA

mRNA sequence

ATGGGGCTGAAACAGTGGTCGGCACCTTCTCCATTTCTCTCTCGCCCTTTCTCCACAAAAAAGGAATTGAGAGCCGTGGCGGCTCTTAAGATGAGTTCAGTACAATCGCAACAGCCGGTTTTGCCGGGCATGCATTCGCCCGTTGGCACCGACGGCCTCTACAACCCCGTTGCCGCCGCCTCTCCCACCTACCAGCCCTCCATCGTCGGAGTTACTGGTAATGCTGGTGCCGGTGAATCTGCCCGTGAATCGTTGACATGA

Coding sequence (CDS)

ATGGGGCTGAAACAGTGGTCGGCACCTTCTCCATTTCTCTCTCGCCCTTTCTCCACAAAAAAGGAATTGAGAGCCGTGGCGGCTCTTAAGATGAGTTCAGTACAATCGCAACAGCCGGTTTTGCCGGGCATGCATTCGCCCGTTGGCACCGACGGCCTCTACAACCCCGTTGCCGCCGCCTCTCCCACCTACCAGCCCTCCATCGTCGGAGTTACTGGTAATGCTGGTGCCGGTGAATCTGCCCGTGAATCGTTGACATGA

Protein sequence

MGLKQWSAPSPFLSRPFSTKKELRAVAALKMSSVQSQQPVLPGMHSPVGTDGLYNPVAAASPTYQPSIVGVTGNAGAGESARESLT

Homology

[Close]

BLAST of CmaCh09G000260.1 vs. TrEMBL
Match: A0A0A0L0T7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664470 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-10
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1


Query: 29 LKMSSVQSQQPVLPGMHSPVGTDGLYNPVAAASPTYQPSIVGVTGNAGAGESARES 85
          L+ +SV SQQPV+  MH P G DG+Y PVA ASPTYQ S VGV GNAGA  SAR++
Sbjct: 19 LQKNSVPSQQPVMQSMHLPFGADGVYKPVATASPTYQSSSVGVAGNAGADGSARDA 74

[Close]

BLAST of CmaCh09G000260.1 vs. NCBI nr
Match: gi|659105097|ref|XP_008453016.1| (PREDICTED: putative DNA-binding protein ESCAROLA [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1


Query: 29 LKMSSVQSQQPVLPGMHSPVGTDGLYNPVAAASPTYQPSIVGVTGNAGAGESARES 85
          L+ +SVQSQQPV+  MH P G DG+Y PV AASPTYQ S VGV GNAGA  SARE+
Sbjct: 19 LQKNSVQSQQPVMQSMHLPFGADGVYKPVTAASPTYQSSNVGVAGNAGADGSAREA 74

[Close]

BLAST of CmaCh09G000260.1 vs. NCBI nr
Match: gi|449455639|ref|XP_004145559.1| (PREDICTED: AT-hook motif nuclear-localized protein 10 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 9.7e-10
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1


Query: 29 LKMSSVQSQQPVLPGMHSPVGTDGLYNPVAAASPTYQPSIVGVTGNAGAGESARES 85
          L+ +SV SQQPV+  MH P G DG+Y PVA ASPTYQ S VGV GNAGA  SAR++
Sbjct: 19 LQKNSVPSQQPVMQSMHLPFGADGVYKPVATASPTYQSSSVGVAGNAGADGSARDA 74

The following BLAST results are available for this feature:

BLAST of CmaCh09G000260.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh09G000260.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0T7_CUCSA	6.7e-10	64.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664470 PE=4 SV=1	[more]

BLAST of CmaCh09G000260.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh09G000260.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659105097\|ref\|XP_008453016.1\|	1.1e-10	67.86	PREDICTED: putative DNA-binding protein ESCAROLA [Cucumis melo]	[more]
gi\|449455639\|ref\|XP_004145559.1\|	9.7e-10	64.29	PREDICTED: AT-hook motif nuclear-localized protein 10 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh09G000260	CmaCh09G000260	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh09G000260.1	CmaCh09G000260.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G000260.1.exon.2	CmaCh09G000260.1.exon.2	exon
CmaCh09G000260.1.exon.1	CmaCh09G000260.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G000260.1.CDS.1	CmaCh09G000260.1.CDS.1	CDS
CmaCh09G000260.1.CDS.2	CmaCh09G000260.1.CDS.2	CDS