Cp4.1LG06g00080.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCAGCCGCAAACCCTTCAACATGGGTCTCCAGATGAGTTCAGTACAATCGCAACAGCCGGTTTTGCCGGGCATGCATTCGCCCTTTGGCACCGACGGCCTGTACAACCCCGCTGCCGCCGCCTCTCCCACCTACCAGCCCTCCATCGTCGGAGTTACTGGTAATGCTGGTGCCGGTGAATCTGCCCGTGAAGGTTTCGTTGACATGAATGCGCAAGGCGAGCCTGTAAAGAGGAAGAGAGGGAGGCCTAGGAAGTATGACCATATGACCCAGATGGCAGTATGGCGCTGCCTCCTGCAGTTCCCTCTGCCGTCGCAACTCAGTCCAGTGGAGGTTTTTCTCCTCCTCCCACCTCCGTGCCAAATTGTTTGAAGAAAGCCAGAGGGAGACCCCTGGCTCTACCAACAAGAAGCAGGGTGATACTCTGGGTAACTTACTTATTCCGCATCCCTTCGTAATTAATTGGCGTCTAGTGTTGGTACTTAACTGATTCTGGTTCTTGATATCTAAGATAGTTGCATTGTGTTCGTCCACATTGCTTTCTCTATCACTTTGGTCATCCATATCACTTTCATCATTGATTTGCATGTACAGAACTTTCAAAATCTTTAGCCTCTGCTGCAAATGTAGTTAAAATTGGGTGTCTTCCCTTTTAATGCAGAGTTCTTATTCTTGGGGGCTCGATTTGGACTCTAATATTGTGATTACAGCTTGAAATATTGTACAGTTGTAATTGTAGAGTCATCAGGAGTTGGATTTACCCCACATGTCATCACCGTGGAAGCTGGAGAGGTTCATATTTTTGTGTGTTTTACTTTGCTGAAATTGAATAGTTGAGTGAGAATAAGAAGACGTAAATGTTTTCCAGGATGTCTGTTCGAAAATAATGTCATTTTCCCAGAATGGGCCTTGAGCTGTTTGTATCCTTACAGCAAATGGTGCAATATCCAATGTGACTCCAATATCCAATAGTGTCCCCATCTTCATGCCTGTAAATAGACCTTCTTCTTTCCTTTTCTTAAACCAGATGGAATTTATGTGTTGTACAGGGGCGATTTGAGATTTTGTCTCTATCTGGGTCATATCTCTTCTCCGAGAATGACGGTCAGCGGAGTCGAACTGGAGGTCTGAGTGTTTCATTATCTGGACCAGACGGTAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCTGCAACTCCTGTTCAGGTACATTAACTTTCCCCATGAGAGCGTTCATATACATCTTTTATAGCCCTATGTATGGTGTTATTAGAATGCTTTTCATTGTTACTATCGGATTACCAGGTAGTCATGGGGAGCTTCATCACTGATGGGGGGCACAAGGAGTTGAGGCAAGCAGACCAAATAGAACAGCCGCCTTTTACTGCACCCCATAAACTTGCTCCCATCCGTGCTGGAATGACGGGAACTAGCAGCAGCCCGCCATCACTGGGTACTCTCAGTGAATCCTCGGGAGGGCCTGGGAGTCCATTTAATCACAGTGCTGGAGCCTGCAATAATAACACCGTATCTTGGATGTGAAACTCGAGGTTGCTTCGTTAACTCACTTGATTTGTTAACATGGCGGGGGCTAACATGGAATCTGGTGTTCTGTTGTCTAATGTTACTCTAGTTCCAGTTTGAGTTGGCTTGGAAAGAACAGACGCGCAATAGTTGTGTTTTGTTTTGATAGTGATGGCATTACAAATCAAATGATGTGTTCATTTCAATTATTGCGCTACTACTTTGATGCTAAATAGTCTCAAAGAGAGAGTATTATTACAAACAGGACTTTTCTTCTTCAGCTATCTCTCGTTTGCTAACAACACATAGGGACTGCCCCTTTAACTCCTTGCTCTTTTCAACAATAAGCGCAAGGAGAAGAAGCCTAAAGCAAAAGTCTGCCAAAACCATCCCCTTGAGTTAGCAGGATCCACCTTTCTGGCTAAGAACCATGCATAAGTACCCTCACCAACATGCAGTAGAAAGGCTATAAGAAACACCATTCTCACCACTTGAATTGACCTAAAGAAGAAAAGGCTGATGCCTTTGAAAAATGGAACAGGTCCTACGTCTGGAAGGAAAGCAGCACAAAACATGATGCTCATTCCGACAACACAGAACAGCCACGCATATATTGTTGGCCCATCGAGACTCTTCCTTTTTCTCTCCTGCCAATATGAGATGGTCGCAGCCATGCCCTCCTTTGGTGTCACCATTGGTACATACCCCAGCTCCTC ATGATCAGCCGCAAACCCTTCAACATGGGTCTCCAGATGAGTTCAGTACAATCGCAACAGCCGGTTTTGCCGGGCATGCATTCGCCCTTTGGCACCGACGGCCTGTACAACCCCGCTGCCGCCGCCTCTCCCACCTACCAGCCCTCCATCGTCGGAGTTACTGGTAATGCTGGTGCCGGTGAATCTGCCCGTGAAGGTTTCGTTGACATGAATGCGCAAGGCGAGCCTGTAAAGAGGAAGAGAGGGAGGCCTAGGAAGTATGACCATATGACCCAGATGGCAGTATGGCGCTGCCTCCTGCAGTTCCCTCTGCCGTCGCAACTCAGTCCAGTGGAGGTAGTCATGGGGAGCTTCATCACTGATGGGGGGCACAAGGAGTTGAGGCAAGCAGACCAAATAGAACAGCCGCCTTTTACTGCACCCCATAAACTTGCTCCCATCCGTGCTGGAATGACGGGAACTAGCAGCAGCCCGCCATCACTGGGTACTCTCAGTGAATCCTCGGGAGGGCCTGGGAGTCCATTTAATCACAGTGCTGGAGCCTGCAATAATAACACCGTATCTTGGATGTGAAACTCGAGGTTGCTTCGTTAACTCACTTGATTTGTTAACATGGCGGGGGCTAACATGGAATCTGGTGTTCTGTTGTCTAATGTTACTCTAGTTCCAGTTTGAGTTGGCTTGGAAAGAACAGACGCGCAATAGTTGTGTTTTGTTTTGATAGTGATGGCATTACAAATCAAATGATGTGTTCATTTCAATTATTGCGCTACTACTTTGATGCTAAATAGTCTCAAAGAGAGAGTATTATTACAAACAGGACTTTTCTTCTTCAGCTATCTCTCGTTTGCTAACAACACATAGGGACTGCCCCTTTAACTCCTTGCTCTTTTCAACAATAAGCGCAAGGAGAAGAAGCCTAAAGCAAAAGTCTGCCAAAACCATCCCCTTGAGTTAGCAGGATCCACCTTTCTGGCTAAGAACCATGCATAAGTACCCTCACCAACATGCAGTAGAAAGGCTATAAGAAACACCATTCTCACCACTTGAATTGACCTAAAGAAGAAAAGGCTGATGCCTTTGAAAAATGGAACAGGTCCTACGTCTGGAAGGAAAGCAGCACAAAACATGATGCTCATTCCGACAACACAGAACAGCCACGCATATATTGTTGGCCCATCGAGACTCTTCCTTTTTCTCTCCTGCCAATATGAGATGGTCGCAGCCATGCCCTCCTTTGGTGTCACCATTGGTACATACCCCAGCTCCTC ATGATCAGCCGCAAACCCTTCAACATGGGTCTCCAGATGAGTTCAGTACAATCGCAACAGCCGGTTTTGCCGGGCATGCATTCGCCCTTTGGCACCGACGGCCTGTACAACCCCGCTGCCGCCGCCTCTCCCACCTACCAGCCCTCCATCGTCGGAGTTACTGGTAATGCTGGTGCCGGTGAATCTGCCCGTGAAGGTTTCGTTGACATGAATGCGCAAGGCGAGCCTGTAAAGAGGAAGAGAGGGAGGCCTAGGAAGTATGACCATATGACCCAGATGGCAGTATGGCGCTGCCTCCTGCAGTTCCCTCTGCCGTCGCAACTCAGTCCAGTGGAGGTAGTCATGGGGAGCTTCATCACTGATGGGGGGCACAAGGAGTTGAGGCAAGCAGACCAAATAGAACAGCCGCCTTTTACTGCACCCCATAAACTTGCTCCCATCCGTGCTGGAATGACGGGAACTAGCAGCAGCCCGCCATCACTGGGTACTCTCAGTGAATCCTCGGGAGGGCCTGGGAGTCCATTTAATCACAGTGCTGGAGCCTGCAATAATAACACCGTATCTTGGATGTGA MISRKPFNMGLQMSSVQSQQPVLPGMHSPFGTDGLYNPAAAASPTYQPSIVGVTGNAGAGESAREGFVDMNAQGEPVKRKRGRPRKYDHMTQMAVWRCLLQFPLPSQLSPVEVVMGSFITDGGHKELRQADQIEQPPFTAPHKLAPIRAGMTGTSSSPPSLGTLSESSGGPGSPFNHSAGACNNNTVSWM
BLAST of Cp4.1LG06g00080.1 vs. TrEMBL
Match: A0A0A0L0T7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664470 PE=4 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 4.4e-30 Identity = 68/81 (83.95%), Postives = 75/81 (92.59%), Query Frame = 1
BLAST of Cp4.1LG06g00080.1 vs. TrEMBL
Match: D7UDF0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00700 PE=4 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 4.5e-14 Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 1
BLAST of Cp4.1LG06g00080.1 vs. TrEMBL
Match: A5AT53_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030792 PE=4 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 4.5e-14 Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 1
BLAST of Cp4.1LG06g00080.1 vs. TrEMBL
Match: V4T682_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001729mg PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11 Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = 1
BLAST of Cp4.1LG06g00080.1 vs. TrEMBL
Match: A0A067GZU3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019329mg PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11 Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = 1
BLAST of Cp4.1LG06g00080.1 vs. NCBI nr
Match: gi|449455639|ref|XP_004145559.1| (PREDICTED: AT-hook motif nuclear-localized protein 10 [Cucumis sativus]) HSP 1 Score: 139.4 bits (350), Expect = 6.4e-30 Identity = 68/81 (83.95%), Postives = 75/81 (92.59%), Query Frame = 1
BLAST of Cp4.1LG06g00080.1 vs. NCBI nr
Match: gi|659105097|ref|XP_008453016.1| (PREDICTED: putative DNA-binding protein ESCAROLA [Cucumis melo]) HSP 1 Score: 136.0 bits (341), Expect = 7.1e-29 Identity = 67/81 (82.72%), Postives = 74/81 (91.36%), Query Frame = 1
BLAST of Cp4.1LG06g00080.1 vs. NCBI nr
Match: gi|147809818|emb|CAN64876.1| (hypothetical protein VITISV_030792 [Vitis vinifera]) HSP 1 Score: 86.3 bits (212), Expect = 6.4e-14 Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 1
BLAST of Cp4.1LG06g00080.1 vs. NCBI nr
Match: gi|225457646|ref|XP_002275328.1| (PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera]) HSP 1 Score: 86.3 bits (212), Expect = 6.4e-14 Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 1
BLAST of Cp4.1LG06g00080.1 vs. NCBI nr
Match: gi|567885763|ref|XP_006435440.1| (hypothetical protein CICLE_v10001729mg [Citrus clementina]) HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11 Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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