Cp4.1LG05g11660 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g11660
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG05 : 8050922 .. 8051149 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATCTTTGCCTTCTCTCCCTCCTTCTCCTACTTCTAACTGCGACCTCTAATTTTCTAGTCGACGGGAGAGCGGTCTGGGTCGATACTCGTAAGACACAAAACGTTGGTGAAGGCGGCGGTGCCAGTGGTGGTTCCGACATGTCGTATCGGAGAGAGCTGTTCGATGAGCGGGTGTTCACGTTGGCATCAGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

mRNA sequence

ATGAGGCATCTTTGCCTTCTCTCCCTCCTTCTCCTACTTCTAACTGCGACCTCTAATTTTCTAGTCGACGGGAGAGCGGTCTGGGTCGATACTCGTAAGACACAAAACGTTGGTGAAGGCGGCGGTGCCAGTGGTGGTTCCGACATGTCGTATCGGAGAGAGCTGTTCGATGAGCGGGTGTTCACGTTGGCATCAGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

Coding sequence (CDS)

ATGAGGCATCTTTGCCTTCTCTCCCTCCTTCTCCTACTTCTAACTGCGACCTCTAATTTTCTAGTCGACGGGAGAGCGGTCTGGGTCGATACTCGTAAGACACAAAACGTTGGTGAAGGCGGCGGTGCCAGTGGTGGTTCCGACATGTCGTATCGGAGAGAGCTGTTCGATGAGCGGGTGTTCACGTTGGCATCAGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

Protein sequence

MRHLCLLSLLLLLLTATSNFLVDGRAVWVDTRKTQNVGEGGGASGGSDMSYRRELFDERVFTLASGPSRRGDGHK
Homology
[Close]
BLAST of Cp4.1LG05g11660 vs. TrEMBL
Match: A0A0A0LNA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G425800 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.5e-09
Identity = 51/93 (54.84%), Postives = 56/93 (60.22%), Query Frame = 1 

Query: 1   MRHLCLLSLLLLLL---TATSNFLVDGRAVWVDTRKTQNVG-------------EGGGAS 60
           MRHLCLLSLLLL L   T TSN LV GRA+  D   T  +G             +GGG S
Sbjct: 50  MRHLCLLSLLLLPLLLPTTTSNLLVHGRALQPDA--TVEIGSHAHEFKLKPKDDDGGGDS 109

Query: 61  GG--SDMSYRRELFDERVFTLASGPSRRGDGHK 76
           GG  SD S      ++RVFTLASGPSRRGDGHK
Sbjct: 110 GGGGSDTS------NQRVFTLASGPSRRGDGHK 134

[Close]
BLAST of Cp4.1LG05g11660 vs. NCBI nr
Match: gi|700208184|gb|KGN63303.1| (hypothetical protein Csa_2G425800 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 51/93 (54.84%), Postives = 56/93 (60.22%), Query Frame = 1 

Query: 1   MRHLCLLSLLLLLL---TATSNFLVDGRAVWVDTRKTQNVG-------------EGGGAS 60
           MRHLCLLSLLLL L   T TSN LV GRA+  D   T  +G             +GGG S
Sbjct: 50  MRHLCLLSLLLLPLLLPTTTSNLLVHGRALQPDA--TVEIGSHAHEFKLKPKDDDGGGDS 109

Query: 61  GG--SDMSYRRELFDERVFTLASGPSRRGDGHK 76
           GG  SD S      ++RVFTLASGPSRRGDGHK
Sbjct: 110 GGGGSDTS------NQRVFTLASGPSRRGDGHK 134

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g11660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g11660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNA9_CUCSA8.5e-0954.84Uncharacterized protein OS=Cucumis sativus GN=Csa_2G425800 PE=4 SV=1[more]
BLAST of Cp4.1LG05g11660 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g11660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208184|gb|KGN63303.1|1.2e-0854.84hypothetical protein Csa_2G425800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g11660.1Cp4.1LG05g11660.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g11660CmaCh02G005020Cucurbita maxima (Rimu)cmacpeB646
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g11660Cucurbita pepo (Zucchini)cpecpeB097
Cp4.1LG05g11660Cucurbita pepo (Zucchini)cpecpeB309
Cp4.1LG05g11660Cucurbita pepo (Zucchini)cpecpeB421
Cp4.1LG05g11660Cucumber (Gy14) v1cgycpeB0115
Cp4.1LG05g11660Cucumber (Gy14) v1cgycpeB0223
Cp4.1LG05g11660Cucurbita maxima (Rimu)cmacpeB585
Cp4.1LG05g11660Cucurbita moschata (Rifu)cmocpeB534
Cp4.1LG05g11660Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g11660Wild cucumber (PI 183967)cpecpiB708
Cp4.1LG05g11660Wild cucumber (PI 183967)cpecpiB764
Cp4.1LG05g11660Cucumber (Chinese Long) v2cpecuB706
Cp4.1LG05g11660Cucumber (Chinese Long) v2cpecuB763
Cp4.1LG05g11660Bottle gourd (USVL1VR-Ls)cpelsiB589
Cp4.1LG05g11660Bottle gourd (USVL1VR-Ls)cpelsiB610
Cp4.1LG05g11660Watermelon (Charleston Gray)cpewcgB642
Cp4.1LG05g11660Watermelon (Charleston Gray)cpewcgB663
Cp4.1LG05g11660Watermelon (97103) v1cpewmB720
Cp4.1LG05g11660Watermelon (97103) v1cpewmB728
Cp4.1LG05g11660Melon (DHL92) v3.5.1cpemeB672
Cp4.1LG05g11660Melon (DHL92) v3.5.1cpemeB706
Cp4.1LG05g11660Cucumber (Gy14) v2cgybcpeB242
Cp4.1LG05g11660Melon (DHL92) v3.6.1cpemedB807
Cp4.1LG05g11660Silver-seed gourdcarcpeB0568
Cp4.1LG05g11660Silver-seed gourdcarcpeB0577
Cp4.1LG05g11660Silver-seed gourdcarcpeB1323
Cp4.1LG05g11660Cucumber (Chinese Long) v3cpecucB0881
Cp4.1LG05g11660Cucumber (Chinese Long) v3cpecucB0943
Cp4.1LG05g11660Wax gourdcpewgoB0950