Cp4.1LG05g11660.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g11660.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG05 : 8050922 .. 8051149 (+)
Sequence length228
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATCTTTGCCTTCTCTCCCTCCTTCTCCTACTTCTAACTGCGACCTCTAATTTTCTAGTCGACGGGAGAGCGGTCTGGGTCGATACTCGTAAGACACAAAACGTTGGTGAAGGCGGCGGTGCCAGTGGTGGTTCCGACATGTCGTATCGGAGAGAGCTGTTCGATGAGCGGGTGTTCACGTTGGCATCAGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

mRNA sequence

ATGAGGCATCTTTGCCTTCTCTCCCTCCTTCTCCTACTTCTAACTGCGACCTCTAATTTTCTAGTCGACGGGAGAGCGGTCTGGGTCGATACTCGTAAGACACAAAACGTTGGTGAAGGCGGCGGTGCCAGTGGTGGTTCCGACATGTCGTATCGGAGAGAGCTGTTCGATGAGCGGGTGTTCACGTTGGCATCAGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

Coding sequence (CDS)

ATGAGGCATCTTTGCCTTCTCTCCCTCCTTCTCCTACTTCTAACTGCGACCTCTAATTTTCTAGTCGACGGGAGAGCGGTCTGGGTCGATACTCGTAAGACACAAAACGTTGGTGAAGGCGGCGGTGCCAGTGGTGGTTCCGACATGTCGTATCGGAGAGAGCTGTTCGATGAGCGGGTGTTCACGTTGGCATCAGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

Protein sequence

MRHLCLLSLLLLLLTATSNFLVDGRAVWVDTRKTQNVGEGGGASGGSDMSYRRELFDERVFTLASGPSRRGDGHK
Homology
[Close]
BLAST of Cp4.1LG05g11660.1 vs. TrEMBL
Match: A0A0A0LNA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G425800 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.5e-09
Identity = 51/93 (54.84%), Postives = 56/93 (60.22%), Query Frame = 1 

Query: 1   MRHLCLLSLLLLLL---TATSNFLVDGRAVWVDTRKTQNVG-------------EGGGAS 60
           MRHLCLLSLLLL L   T TSN LV GRA+  D   T  +G             +GGG S
Sbjct: 50  MRHLCLLSLLLLPLLLPTTTSNLLVHGRALQPDA--TVEIGSHAHEFKLKPKDDDGGGDS 109

Query: 61  GG--SDMSYRRELFDERVFTLASGPSRRGDGHK 76
           GG  SD S      ++RVFTLASGPSRRGDGHK
Sbjct: 110 GGGGSDTS------NQRVFTLASGPSRRGDGHK 134

[Close]
BLAST of Cp4.1LG05g11660.1 vs. NCBI nr
Match: gi|700208184|gb|KGN63303.1| (hypothetical protein Csa_2G425800 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 51/93 (54.84%), Postives = 56/93 (60.22%), Query Frame = 1 

Query: 1   MRHLCLLSLLLLLL---TATSNFLVDGRAVWVDTRKTQNVG-------------EGGGAS 60
           MRHLCLLSLLLL L   T TSN LV GRA+  D   T  +G             +GGG S
Sbjct: 50  MRHLCLLSLLLLPLLLPTTTSNLLVHGRALQPDA--TVEIGSHAHEFKLKPKDDDGGGDS 109

Query: 61  GG--SDMSYRRELFDERVFTLASGPSRRGDGHK 76
           GG  SD S      ++RVFTLASGPSRRGDGHK
Sbjct: 110 GGGGSDTS------NQRVFTLASGPSRRGDGHK 134

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g11660.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g11660.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNA9_CUCSA8.5e-0954.84Uncharacterized protein OS=Cucumis sativus GN=Csa_2G425800 PE=4 SV=1[more]
BLAST of Cp4.1LG05g11660.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g11660.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208184|gb|KGN63303.1|1.2e-0854.84hypothetical protein Csa_2G425800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG05g11660Cp4.1LG05g11660gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG05g11660.1:cds:001Cp4.1LG05g11660.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG05g11660.1Cp4.1LG05g11660.1-proteinpolypeptide