CmaCh02G005020 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G005020
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr02 : 2681491 .. 2681718 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATCTTTGCCTTCTCTCCCTCCTTCTCCTACTTCTAACTGCGACCTCTAATTTTCTAGTCGACGGGAGAGCGGTCTGGGTCGATACTGGTAAGACACAAAACGTTGGTGAGGGCGGCGGTGCTGGTGGTGGTTCCGACATGTCGTATCAGAGAGAGCTGTTGGATGAGCGGGTGTTCACGTTGGCATCAGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

mRNA sequence

ATGAGGCATCTTTGCCTTCTCTCCCTCCTTCTCCTACTTCTAACTGCGACCTCTAATTTTCTAGTCGACGGGAGAGCGGTCTGGGTCGATACTGGTAAGACACAAAACGTTGGTGAGGGCGGCGGTGCTGGTGGTGGTTCCGACATGTCGTATCAGAGAGAGCTGTTGGATGAGCGGGTGTTCACGTTGGCATCAGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

Coding sequence (CDS)

ATGAGGCATCTTTGCCTTCTCTCCCTCCTTCTCCTACTTCTAACTGCGACCTCTAATTTTCTAGTCGACGGGAGAGCGGTCTGGGTCGATACTGGTAAGACACAAAACGTTGGTGAGGGCGGCGGTGCTGGTGGTGGTTCCGACATGTCGTATCAGAGAGAGCTGTTGGATGAGCGGGTGTTCACGTTGGCATCAGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

Protein sequence

MRHLCLLSLLLLLLTATSNFLVDGRAVWVDTGKTQNVGEGGGAGGGSDMSYQRELLDERVFTLASGPSRRGDGHK
Homology
[Close]
BLAST of CmaCh02G005020 vs. TrEMBL
Match: A0A0A0LNA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G425800 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-09
Identity = 52/93 (55.91%), Postives = 55/93 (59.14%), Query Frame = 1 

Query: 1   MRHLCLLSLLLLLL---TATSNFLVDGRAVWVDTGKTQNVG-------------EGGG-- 60
           MRHLCLLSLLLL L   T TSN LV GRA+  D   T  +G             +GGG  
Sbjct: 50  MRHLCLLSLLLLPLLLPTTTSNLLVHGRALQPDA--TVEIGSHAHEFKLKPKDDDGGGDS 109

Query: 61  AGGGSDMSYQRELLDERVFTLASGPSRRGDGHK 76
            GGGSD S QR      VFTLASGPSRRGDGHK
Sbjct: 110 GGGGSDTSNQR------VFTLASGPSRRGDGHK 134

[Close]
BLAST of CmaCh02G005020 vs. NCBI nr
Match: gi|700208184|gb|KGN63303.1| (hypothetical protein Csa_2G425800 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-09
Identity = 52/93 (55.91%), Postives = 55/93 (59.14%), Query Frame = 1 

Query: 1   MRHLCLLSLLLLLL---TATSNFLVDGRAVWVDTGKTQNVG-------------EGGG-- 60
           MRHLCLLSLLLL L   T TSN LV GRA+  D   T  +G             +GGG  
Sbjct: 50  MRHLCLLSLLLLPLLLPTTTSNLLVHGRALQPDA--TVEIGSHAHEFKLKPKDDDGGGDS 109

Query: 61  AGGGSDMSYQRELLDERVFTLASGPSRRGDGHK 76
            GGGSD S QR      VFTLASGPSRRGDGHK
Sbjct: 110 GGGGSDTSNQR------VFTLASGPSRRGDGHK 134

The following BLAST results are available for this feature:
BLAST of CmaCh02G005020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh02G005020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNA9_CUCSA3.8e-0955.91Uncharacterized protein OS=Cucumis sativus GN=Csa_2G425800 PE=4 SV=1[more]
BLAST of CmaCh02G005020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh02G005020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208184|gb|KGN63303.1|5.5e-0955.91hypothetical protein Csa_2G425800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G005020.1CmaCh02G005020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G005020Cp4.1LG05g11660Cucurbita pepo (Zucchini)cmacpeB646
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G005020Watermelon (97103) v2cmawmbB617
CmaCh02G005020Wax gourdcmawgoB0768
CmaCh02G005020Wax gourdcmawgoB0755
CmaCh02G005020Wax gourdcmawgoB0759
CmaCh02G005020Cucurbita maxima (Rimu)cmacmaB469
CmaCh02G005020Cucumber (Gy14) v1cgycmaB0228
CmaCh02G005020Cucumber (Gy14) v1cgycmaB0118
CmaCh02G005020Cucurbita moschata (Rifu)cmacmoB606
CmaCh02G005020Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G005020Wild cucumber (PI 183967)cmacpiB595
CmaCh02G005020Wild cucumber (PI 183967)cmacpiB631
CmaCh02G005020Cucumber (Chinese Long) v2cmacuB590
CmaCh02G005020Cucumber (Chinese Long) v2cmacuB626
CmaCh02G005020Melon (DHL92) v3.5.1cmameB534
CmaCh02G005020Melon (DHL92) v3.5.1cmameB584
CmaCh02G005020Watermelon (Charleston Gray)cmawcgB520
CmaCh02G005020Watermelon (Charleston Gray)cmawcgB530
CmaCh02G005020Watermelon (97103) v1cmawmB570
CmaCh02G005020Watermelon (97103) v1cmawmB595
CmaCh02G005020Cucurbita pepo (Zucchini)cmacpeB626
CmaCh02G005020Bottle gourd (USVL1VR-Ls)cmalsiB548
CmaCh02G005020Bottle gourd (USVL1VR-Ls)cmalsiB567
CmaCh02G005020Cucumber (Gy14) v2cgybcmaB231
CmaCh02G005020Cucumber (Gy14) v2cgybcmaB816
CmaCh02G005020Melon (DHL92) v3.6.1cmamedB616
CmaCh02G005020Silver-seed gourdcarcmaB0573
CmaCh02G005020Silver-seed gourdcarcmaB1309
CmaCh02G005020Cucumber (Chinese Long) v3cmacucB0703
CmaCh02G005020Cucumber (Chinese Long) v3cmacucB0748