Cp4.1LG05g11010 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g11010
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBasic helix-loop-helix transcription factor
LocationCp4.1LG05 : 7447488 .. 7448111 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGACATCGACATCCTCAAATCGACACTATCACCTTCGAACTCCATCGACATGTCGTCCACAATCCTCCTCAACAACAACAACAACAACCTTCACTACCCTCCACTCCCCTTCTTCTCCGACTTCTCATCTCCCTCCTTCCACACCGCACAGGCAGCGCTGCCGAACCATCACCACCAGAACCGGCAGAAGCGCGGCGGGGGCGGGGGCGGGGGCGGAGGAATGGCAGCAATGAGAGAGATGATATTCCGAATAGCAGCAATGCAGCCAATACAAATAGACCCAGAGGAGATAAAGGCGCCAAAGCGGCGAAACGTGAGAATCTCGAAGGACCCACAGAGCGTGGCGGCGAGGCAGCGGAGGGAGAGAATCAGCCAGAAGATTAGGATTCTGCAGCGGCTGGTGCCTGGGGGAACTAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTTCATTATGTGAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAGCAGGCAGGGTTTCACAATACTACTAATAGTAACAACTGTCCTAACCTTACTTATTCTTCTGCGCTTTTCAAAGCTTGCCAAATGCCCCACGCTCCATCTATGTCTGGCTCTTTGCAAATGCATTGA

mRNA sequence

ATGGACGACATCGACATCCTCAAATCGACACTATCACCTTCGAACTCCATCGACATGTCGTCCACAATCCTCCTCAACAACAACAACAACAACCTTCACTACCCTCCACTCCCCTTCTTCTCCGACTTCTCATCTCCCTCCTTCCACACCGCACAGGCAGCGCTGCCGAACCATCACCACCAGAACCGGCAGAAGCGCGGCGGGGGCGGGGGCGGGGGCGGAGGAATGGCAGCAATGAGAGAGATGATATTCCGAATAGCAGCAATGCAGCCAATACAAATAGACCCAGAGGAGATAAAGGCGCCAAAGCGGCGAAACGTGAGAATCTCGAAGGACCCACAGAGCGTGGCGGCGAGGCAGCGGAGGGAGAGAATCAGCCAGAAGATTAGGATTCTGCAGCGGCTGGTGCCTGGGGGAACTAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTTCATTATGTGAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAGCAGGCAGGGTTTCACAATACTACTAATAGTAACAACTGTCCTAACCTTACTTATTCTTCTGCGCTTTTCAAAGCTTGCCAAATGCCCCACGCTCCATCTATGTCTGGCTCTTTGCAAATGCATTGA

Coding sequence (CDS)

ATGGACGACATCGACATCCTCAAATCGACACTATCACCTTCGAACTCCATCGACATGTCGTCCACAATCCTCCTCAACAACAACAACAACAACCTTCACTACCCTCCACTCCCCTTCTTCTCCGACTTCTCATCTCCCTCCTTCCACACCGCACAGGCAGCGCTGCCGAACCATCACCACCAGAACCGGCAGAAGCGCGGCGGGGGCGGGGGCGGGGGCGGAGGAATGGCAGCAATGAGAGAGATGATATTCCGAATAGCAGCAATGCAGCCAATACAAATAGACCCAGAGGAGATAAAGGCGCCAAAGCGGCGAAACGTGAGAATCTCGAAGGACCCACAGAGCGTGGCGGCGAGGCAGCGGAGGGAGAGAATCAGCCAGAAGATTAGGATTCTGCAGCGGCTGGTGCCTGGGGGAACTAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTTCATTATGTGAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAGCAGGCAGGGTTTCACAATACTACTAATAGTAACAACTGTCCTAACCTTACTTATTCTTCTGCGCTTTTCAAAGCTTGCCAAATGCCCCACGCTCCATCTATGTCTGGCTCTTTGCAAATGCATTGA

Protein sequence

MDDIDILKSTLSPSNSIDMSSTILLNNNNNNLHYPPLPFFSDFSSPSFHTAQAALPNHHHQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNTTNSNNCPNLTYSSALFKACQMPHAPSMSGSLQMH
Homology
[Close]
BLAST of Cp4.1LG05g11010 vs. Swiss-Prot
Match: HEC1_ARATH (Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-37
Identity = 81/106 (76.42%), Postives = 91/106 (85.85%), Query Frame = 1 

Query: 62  NRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQR 121
           +++        G  MAAMREMIFRIA MQPI IDPE +K PKRRNVRISKDPQSVAAR R
Sbjct: 81  DKRNNSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHR 140

Query: 122 RERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ 168
           RERIS++IRILQRLVPGGTKMDTASMLDEA+HYVKFLK+QVQ+LE+
Sbjct: 141 RERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE 186

[Close]
BLAST of Cp4.1LG05g11010 vs. Swiss-Prot
Match: HEC2_ARATH (Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.0e-36
Identity = 95/175 (54.29%), Postives = 115/175 (65.71%), Query Frame = 1 

Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNN------NLHYPPLPFFSDFS--SPSFHTAQ 60
           M  ++ L    S SN       I++ + +N      N  +  LPF        P  +   
Sbjct: 12  MQQMEKLPEHFSNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHHQPGLNFRY 71

Query: 61  AALPNHHHQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKD 120
           A  P+    +  ++ GG      MAAMREMIFRIA MQPI IDPE +K PKR+NVRISKD
Sbjct: 72  APSPS---SSLPEKRGGCSDNANMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKD 131

Query: 121 PQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ 168
           PQSVAAR RRERIS++IRILQRLVPGGTKMDTASMLDEA+HYVKFLK+QVQ+LE+
Sbjct: 132 PQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE 183

[Close]
BLAST of Cp4.1LG05g11010 vs. Swiss-Prot
Match: HEC3_ARATH (Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-31
Identity = 76/127 (59.84%), Postives = 92/127 (72.44%), Query Frame = 1 

Query: 76  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 135
           + AM+EM+++IAAMQ + IDP  +K PKRRNVRIS DPQSVAAR RRERIS++IRILQRL
Sbjct: 92  LGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRL 151

Query: 136 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNTTNSNNCPNLTYSSALFKACQMP 195
           VPGGTKMDTASMLDEA+ YVKFLKRQ++ L     +NT  +   P    S A+  +   P
Sbjct: 152 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLN----NNTGYTPPPPQDQASQAVTTSWVSP 211

Query: 196 HAPSMSG 203
             P   G
Sbjct: 212 PPPPSFG 214

[Close]
BLAST of Cp4.1LG05g11010 vs. Swiss-Prot
Match: IND_ARATH (Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3)

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-28
Identity = 63/91 (69.23%), Postives = 75/91 (82.42%), Query Frame = 1 

Query: 76  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 135
           M AM+EM + IA MQP+ IDP  +  P RRNVRIS DPQ+V AR+RRERIS+KIRIL+R+
Sbjct: 85  MDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRI 144

Query: 136 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLE 167
           VPGG KMDTASMLDEA+ Y KFLKRQV+ L+
Sbjct: 145 VPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]
BLAST of Cp4.1LG05g11010 vs. Swiss-Prot
Match: BH087_ARATH (Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.9e-27
Identity = 67/112 (59.82%), Postives = 86/112 (76.79%), Query Frame = 1 

Query: 76  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 135
           +A M+EMI+R AA +P+    E ++ PKR+NV+IS DPQ+VAARQRRERIS+KIR+LQ L
Sbjct: 242 IAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQTL 301

Query: 136 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNTTNSNNCPNLTYSSA 188
           VPGGTKMDTASMLDEA +Y+KFL+ QV+ LE     N     +  NL++SSA
Sbjct: 302 VPGGTKMDTASMLDEAANYLKFLRAQVKALE-----NLRPKLDQTNLSFSSA 348

[Close]
BLAST of Cp4.1LG05g11010 vs. TrEMBL
Match: A0A0A0LJI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285890 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.2e-58
Identity = 146/225 (64.89%), Postives = 157/225 (69.78%), Query Frame = 1 

Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNNNLH------YPPLPFFSDFSSPS----FHT 60
           MDDIDILKSTLS S   DMSST   NN   N         PP  +FSD+S P     F T
Sbjct: 1   MDDIDILKSTLSQS---DMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQT 60

Query: 61  AQAALPNHHHQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRIS 120
               +P    + R+     G  GGGMAAMREMIFRIAAMQP++IDPE IKAPKRRNVRIS
Sbjct: 61  TPTIIPETPARQRRS----GVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRIS 120

Query: 121 KDPQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF 180
           KDPQSVAAR RRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF
Sbjct: 121 KDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF 180

Query: 181 HNTTNSN---------NCPNLTYSSALFKACQMPHAPSMSGSLQM 207
           +   N+N         N  NL Y+SALFKACQ+     M  SLQM
Sbjct: 181 NYNNNNNNNNNFNNFVNSANLNYASALFKACQI-----MPASLQM 213

[Close]
BLAST of Cp4.1LG05g11010 vs. TrEMBL
Match: A0A0L9TJV6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan1345s000600 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 115/206 (55.83%), Postives = 129/206 (62.62%), Query Frame = 1 

Query: 11  LSPSNSIDMSSTILLNNNNNNLHYPPLPFFSDFSS-----------PSFHTAQAALPNHH 70
           LS  +S    STI  N     L  PP P   +FS+           PS H  Q +  +  
Sbjct: 48  LSSGSSSTSVSTIFNNGTPPTLVEPPPPNVLNFSNNDNGLIQQPMTPSLHPPQPSTTSFP 107

Query: 71  HQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAAR 130
           + + +K          MAAMREMIFRIA MQPI IDPE IK PKRRNV+ISKDPQSVAAR
Sbjct: 108 YPSEKKNS--------MAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAAR 167

Query: 131 QRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF-----HNTT 190
            RRERIS+KIRILQRLVPGGTKMDTASMLDEA+HYVKFLK+QVQTLEQAG      HNT 
Sbjct: 168 HRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRQHNHNTV 227

Query: 191 -------NSNNCPNLTYSSALFKACQ 194
                    +N  N+ YSS L K CQ
Sbjct: 228 AAVGFPIGMSNSNNVNYSSLLMKGCQ 245

[Close]
BLAST of Cp4.1LG05g11010 vs. TrEMBL
Match: A0A0S3R4K7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G347700 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 115/206 (55.83%), Postives = 129/206 (62.62%), Query Frame = 1 

Query: 11  LSPSNSIDMSSTILLNNNNNNLHYPPLPFFSDFSS-----------PSFHTAQAALPNHH 70
           LS  +S    STI  N     L  PP P   +FS+           PS H  Q +  +  
Sbjct: 48  LSSGSSSTSVSTIFNNGTPPTLVEPPPPNVLNFSNNDNGLIQQPMTPSLHPPQPSTTSFP 107

Query: 71  HQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAAR 130
           + + +K          MAAMREMIFRIA MQPI IDPE IK PKRRNV+ISKDPQSVAAR
Sbjct: 108 YPSEKKNS--------MAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAAR 167

Query: 131 QRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF-----HNTT 190
            RRERIS+KIRILQRLVPGGTKMDTASMLDEA+HYVKFLK+QVQTLEQAG      HNT 
Sbjct: 168 HRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRQHNHNTV 227

Query: 191 -------NSNNCPNLTYSSALFKACQ 194
                    +N  N+ YSS L K CQ
Sbjct: 228 AAVGFPIGMSNSNNVNYSSLLMKGCQ 245

[Close]
BLAST of Cp4.1LG05g11010 vs. TrEMBL
Match: I1LHE1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G055300 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.0e-41
Identity = 118/234 (50.43%), Postives = 138/234 (58.97%), Query Frame = 1 

Query: 3   DIDILKSTLSPSNSIDMSSTIL-----------LNNNNNNLHYPPL-------------- 62
           D+DILK++ S + S+DM  T++             NNNNN    PL              
Sbjct: 2   DVDILKTSTSDNISMDMMMTMMQMEKFPEFCEPFYNNNNNTSTAPLYPENELLINSTTTL 61

Query: 63  PFFSDF-----------SSPSFHTAQAALPNHHHQNRQKRGGGGGGGGGMAAMREMIFRI 122
           P FS+            SS +F   Q   P H   N +KR         +AAMREMIFR+
Sbjct: 62  PVFSNVINNPNVITPPPSSSNFIQQQPMTP-HLEPNLEKRNS-------VAAMREMIFRV 121

Query: 123 AAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMDTAS 182
           A MQPI IDPE IK PKRRNV+ISKDPQSVAAR RRERIS++IRILQRLVPGGTKMDTAS
Sbjct: 122 AVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTAS 181

Query: 183 MLDEAVHYVKFLKRQVQTLEQAGFHN-------TTNSNNCPNLTYSSALFKACQ 194
           MLDEA+HYVKFLK+QVQTLEQAG           T ++N  N    S   K+CQ
Sbjct: 182 MLDEAIHYVKFLKKQVQTLEQAGASRPLNVVGFPTTASNANNNNSYSGFVKSCQ 227

[Close]
BLAST of Cp4.1LG05g11010 vs. TrEMBL
Match: A0A0B2SA94_GLYSO (Transcription factor HEC1 OS=Glycine soja GN=glysoja_003825 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.0e-41
Identity = 118/234 (50.43%), Postives = 138/234 (58.97%), Query Frame = 1 

Query: 3   DIDILKSTLSPSNSIDMSSTIL-----------LNNNNNNLHYPPL-------------- 62
           D+DILK++ S + S+DM  T++             NNNNN    PL              
Sbjct: 2   DVDILKTSTSDNISMDMMMTMMQMEKFPEFCEPFYNNNNNTSTAPLYPENELLINSTTTL 61

Query: 63  PFFSDF-----------SSPSFHTAQAALPNHHHQNRQKRGGGGGGGGGMAAMREMIFRI 122
           P FS+            SS +F   Q   P H   N +KR         +AAMREMIFR+
Sbjct: 62  PVFSNVINNPNVITPPPSSSNFIQQQPMTP-HLEPNLEKRNS-------VAAMREMIFRV 121

Query: 123 AAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMDTAS 182
           A MQPI IDPE IK PKRRNV+ISKDPQSVAAR RRERIS++IRILQRLVPGGTKMDTAS
Sbjct: 122 AVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTAS 181

Query: 183 MLDEAVHYVKFLKRQVQTLEQAGFHN-------TTNSNNCPNLTYSSALFKACQ 194
           MLDEA+HYVKFLK+QVQTLEQAG           T ++N  N    S   K+CQ
Sbjct: 182 MLDEAIHYVKFLKKQVQTLEQAGASRPLNVVGFPTTASNANNNNSYSGFVKSCQ 227

[Close]
BLAST of Cp4.1LG05g11010 vs. TAIR10
Match: AT5G67060.1 (AT5G67060.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 157.5 bits (397), Expect = 8.7e-39
Identity = 81/106 (76.42%), Postives = 91/106 (85.85%), Query Frame = 1 

Query: 62  NRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQR 121
           +++        G  MAAMREMIFRIA MQPI IDPE +K PKRRNVRISKDPQSVAAR R
Sbjct: 81  DKRNNSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHR 140

Query: 122 RERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ 168
           RERIS++IRILQRLVPGGTKMDTASMLDEA+HYVKFLK+QVQ+LE+
Sbjct: 141 RERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE 186

[Close]
BLAST of Cp4.1LG05g11010 vs. TAIR10
Match: AT3G50330.1 (AT3G50330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-37
Identity = 95/175 (54.29%), Postives = 115/175 (65.71%), Query Frame = 1 

Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNN------NLHYPPLPFFSDFS--SPSFHTAQ 60
           M  ++ L    S SN       I++ + +N      N  +  LPF        P  +   
Sbjct: 12  MQQMEKLPEHFSNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHHQPGLNFRY 71

Query: 61  AALPNHHHQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKD 120
           A  P+    +  ++ GG      MAAMREMIFRIA MQPI IDPE +K PKR+NVRISKD
Sbjct: 72  APSPS---SSLPEKRGGCSDNANMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKD 131

Query: 121 PQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ 168
           PQSVAAR RRERIS++IRILQRLVPGGTKMDTASMLDEA+HYVKFLK+QVQ+LE+
Sbjct: 132 PQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE 183

[Close]
BLAST of Cp4.1LG05g11010 vs. TAIR10
Match: AT5G09750.1 (AT5G09750.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-32
Identity = 76/127 (59.84%), Postives = 92/127 (72.44%), Query Frame = 1 

Query: 76  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 135
           + AM+EM+++IAAMQ + IDP  +K PKRRNVRIS DPQSVAAR RRERIS++IRILQRL
Sbjct: 92  LGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRL 151

Query: 136 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNTTNSNNCPNLTYSSALFKACQMP 195
           VPGGTKMDTASMLDEA+ YVKFLKRQ++ L     +NT  +   P    S A+  +   P
Sbjct: 152 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLN----NNTGYTPPPPQDQASQAVTTSWVSP 211

Query: 196 HAPSMSG 203
             P   G
Sbjct: 212 PPPPSFG 214

[Close]
BLAST of Cp4.1LG05g11010 vs. TAIR10
Match: AT4G00120.1 (AT4G00120.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-29
Identity = 63/91 (69.23%), Postives = 75/91 (82.42%), Query Frame = 1 

Query: 76  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 135
           M AM+EM + IA MQP+ IDP  +  P RRNVRIS DPQ+V AR+RRERIS+KIRIL+R+
Sbjct: 85  MDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRI 144

Query: 136 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLE 167
           VPGG KMDTASMLDEA+ Y KFLKRQV+ L+
Sbjct: 145 VPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]
BLAST of Cp4.1LG05g11010 vs. TAIR10
Match: AT3G21330.1 (AT3G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-28
Identity = 67/112 (59.82%), Postives = 86/112 (76.79%), Query Frame = 1 

Query: 76  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 135
           +A M+EMI+R AA +P+    E ++ PKR+NV+IS DPQ+VAARQRRERIS+KIR+LQ L
Sbjct: 242 IAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQTL 301

Query: 136 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNTTNSNNCPNLTYSSA 188
           VPGGTKMDTASMLDEA +Y+KFL+ QV+ LE     N     +  NL++SSA
Sbjct: 302 VPGGTKMDTASMLDEAANYLKFLRAQVKALE-----NLRPKLDQTNLSFSSA 348

[Close]
BLAST of Cp4.1LG05g11010 vs. NCBI nr
Match: gi|659115951|ref|XP_008457823.1| (PREDICTED: transcription factor HEC2-like [Cucumis melo])

HSP 1 Score: 238.4 bits (607), Expect = 1.1e-59
Identity = 149/222 (67.12%), Postives = 159/222 (71.62%), Query Frame = 1 

Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNNNLHYPPLPFFSDFSSPS----FHTAQAALP 60
           MDDIDILKSTLSPS   DMSST   NN    L   P P+FSD+S P     F T    +P
Sbjct: 1   MDDIDILKSTLSPS---DMSSTFFPNNCPQLLPVIPPPYFSDYSPPPGTSLFQTTPTIIP 60

Query: 61  NHHHQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSV 120
                 RQ+R   G  GGGMAAMREMIFRIAAMQP++IDPE IKAPKRRNVRISKDPQSV
Sbjct: 61  --EAPARQRR--SGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSV 120

Query: 121 AARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNTTNS 180
           AAR RRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF+   N+
Sbjct: 121 AARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNN 180

Query: 181 N------------NCPNLTYSSALFKACQMPHAPSMSGSLQM 207
           N            N  NL Y+SALFKACQ+     M  SLQM
Sbjct: 181 NNNNNNNNFNNFVNSANLNYASALFKACQI-----MPASLQM 210

[Close]
BLAST of Cp4.1LG05g11010 vs. NCBI nr
Match: gi|700206886|gb|KGN62005.1| (hypothetical protein Csa_2G285890 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 6.0e-58
Identity = 146/225 (64.89%), Postives = 157/225 (69.78%), Query Frame = 1 

Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNNNLH------YPPLPFFSDFSSPS----FHT 60
           MDDIDILKSTLS S   DMSST   NN   N         PP  +FSD+S P     F T
Sbjct: 1   MDDIDILKSTLSQS---DMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQT 60

Query: 61  AQAALPNHHHQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRIS 120
               +P    + R+     G  GGGMAAMREMIFRIAAMQP++IDPE IKAPKRRNVRIS
Sbjct: 61  TPTIIPETPARQRRS----GVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRIS 120

Query: 121 KDPQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF 180
           KDPQSVAAR RRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF
Sbjct: 121 KDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF 180

Query: 181 HNTTNSN---------NCPNLTYSSALFKACQMPHAPSMSGSLQM 207
           +   N+N         N  NL Y+SALFKACQ+     M  SLQM
Sbjct: 181 NYNNNNNNNNNFNNFVNSANLNYASALFKACQI-----MPASLQM 213

[Close]
BLAST of Cp4.1LG05g11010 vs. NCBI nr
Match: gi|951002519|ref|XP_014507358.1| (PREDICTED: transcription factor HEC2 [Vigna radiata var. radiata])

HSP 1 Score: 183.3 bits (464), Expect = 4.2e-43
Identity = 116/206 (56.31%), Postives = 129/206 (62.62%), Query Frame = 1 

Query: 11  LSPSNSIDMSSTILLNNNNNNLHYPPLPFFSDFSS-----------PSFHTAQAALPNHH 70
           LS  +S    STI  N     L  PP P   +FS+           PS H  Q +  +  
Sbjct: 48  LSSGSSSTSVSTIFNNGTPPTLVDPPPPNVLNFSNNDNTYIQQPMTPSLHPPQPSTTSFP 107

Query: 71  HQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAAR 130
           H + +K          MAAMREMIFRIA MQPI IDPE IK PKRRNV+ISKDPQSVAAR
Sbjct: 108 HPSEKKNS--------MAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAAR 167

Query: 131 QRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF-----HNTT 190
            RRERIS+KIRILQRLVPGGTKMDTASMLDEA+HYVKFLK+QVQTLEQAG      HNT 
Sbjct: 168 HRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATRQHNHNTV 227

Query: 191 -------NSNNCPNLTYSSALFKACQ 194
                    +N  N+ YSS L K CQ
Sbjct: 228 AAVGFPIGMSNSNNVNYSSLLMKGCQ 245

[Close]
BLAST of Cp4.1LG05g11010 vs. NCBI nr
Match: gi|920683755|gb|KOM30414.1| (hypothetical protein LR48_Vigan1345s000600 [Vigna angularis])

HSP 1 Score: 181.4 bits (459), Expect = 1.6e-42
Identity = 115/206 (55.83%), Postives = 129/206 (62.62%), Query Frame = 1 

Query: 11  LSPSNSIDMSSTILLNNNNNNLHYPPLPFFSDFSS-----------PSFHTAQAALPNHH 70
           LS  +S    STI  N     L  PP P   +FS+           PS H  Q +  +  
Sbjct: 48  LSSGSSSTSVSTIFNNGTPPTLVEPPPPNVLNFSNNDNGLIQQPMTPSLHPPQPSTTSFP 107

Query: 71  HQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAAR 130
           + + +K          MAAMREMIFRIA MQPI IDPE IK PKRRNV+ISKDPQSVAAR
Sbjct: 108 YPSEKKNS--------MAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAAR 167

Query: 131 QRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF-----HNTT 190
            RRERIS+KIRILQRLVPGGTKMDTASMLDEA+HYVKFLK+QVQTLEQAG      HNT 
Sbjct: 168 HRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRQHNHNTV 227

Query: 191 -------NSNNCPNLTYSSALFKACQ 194
                    +N  N+ YSS L K CQ
Sbjct: 228 AAVGFPIGMSNSNNVNYSSLLMKGCQ 245

[Close]
BLAST of Cp4.1LG05g11010 vs. NCBI nr
Match: gi|1021514246|ref|XP_016200633.1| (PREDICTED: transcription factor HEC2 [Arachis ipaensis])

HSP 1 Score: 177.9 bits (450), Expect = 1.8e-41
Identity = 94/137 (68.61%), Postives = 106/137 (77.37%), Query Frame = 1 

Query: 76  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 135
           MAAMREMIFR+A MQP+ IDPE IK PKRRNV+ISKDPQSVAAR RRERIS++IRILQRL
Sbjct: 114 MAAMREMIFRVAVMQPVHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRL 173

Query: 136 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNTTNSNNCPNLTYSS--------- 195
           VPGGTKMDTASMLDEA+HYVKFLK+QVQTLEQAG   T N+N     + SS         
Sbjct: 174 VPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGGGRTCNNNGFTGFSSSSSSINASNYP 233

Query: 196 ALFKACQMPHAPSMSGS 204
           A+ K C  P+ P + GS
Sbjct: 234 AMVKGCHQPYPPMLMGS 250

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g11010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HEC1_ARATH1.5e-3776.42Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1[more]
HEC2_ARATH5.0e-3654.29Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1[more]
HEC3_ARATH2.8e-3159.84Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1[more]
IND_ARATH2.2e-2869.23Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3[more]
BH087_ARATH1.9e-2759.82Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1[more]
BLAST of Cp4.1LG05g11010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJI7_CUCSA4.2e-5864.89Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285890 PE=4 SV=1[more]
A0A0L9TJV6_PHAAN1.1e-4255.83Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan1345s000600 PE=4 SV=... [more]
A0A0S3R4K7_PHAAN1.1e-4255.83Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G347700 PE=... [more]
I1LHE1_SOYBN8.0e-4150.43Uncharacterized protein OS=Glycine max GN=GLYMA_11G055300 PE=4 SV=1[more]
A0A0B2SA94_GLYSO8.0e-4150.43Transcription factor HEC1 OS=Glycine soja GN=glysoja_003825 PE=4 SV=1[more]
BLAST of Cp4.1LG05g11010 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G67060.18.7e-3976.42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G50330.12.8e-3754.29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT5G09750.11.6e-3259.84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G00120.11.3e-2969.23 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G21330.11.1e-2859.82 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of Cp4.1LG05g11010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115951|ref|XP_008457823.1|1.1e-5967.12PREDICTED: transcription factor HEC2-like [Cucumis melo][more]
gi|700206886|gb|KGN62005.1|6.0e-5864.89hypothetical protein Csa_2G285890 [Cucumis sativus][more]
gi|951002519|ref|XP_014507358.1|4.2e-4356.31PREDICTED: transcription factor HEC2 [Vigna radiata var. radiata][more]
gi|920683755|gb|KOM30414.1|1.6e-4255.83hypothetical protein LR48_Vigan1345s000600 [Vigna angularis][more]
gi|1021514246|ref|XP_016200633.1|1.8e-4168.61PREDICTED: transcription factor HEC2 [Arachis ipaensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g11010.1Cp4.1LG05g11010.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 110..168
score: 6.5
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 118..158
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 115..164
score: 9.8
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 109..158
score: 15
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 113..168
score: 2.22
NoneNo IPR availableunknownCoilCoilcoord: 148..168
scor
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 76..167
score: 8.7
NoneNo IPR availablePANTHERPTHR12565:SF74TRANSCRIPTION FACTOR HEC1coord: 76..167
score: 8.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g11010Cucsa.101020Cucumber (Gy14) v1cgycpeB0224
Cp4.1LG05g11010Cucsa.366890Cucumber (Gy14) v1cgycpeB0976
Cp4.1LG05g11010CmaCh02G005770Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g11010CmaCh03G010890Cucurbita maxima (Rimu)cmacpeB683
Cp4.1LG05g11010CmoCh03G010750Cucurbita moschata (Rifu)cmocpeB636
Cp4.1LG05g11010CmoCh02G005850Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g11010Cla008442Watermelon (97103) v1cpewmB715
Cp4.1LG05g11010Cla020193Watermelon (97103) v1cpewmB732
Cp4.1LG05g11010Csa6G483450Cucumber (Chinese Long) v2cpecuB764
Cp4.1LG05g11010Csa2G285890Cucumber (Chinese Long) v2cpecuB708
Cp4.1LG05g11010ClCG02G012720Watermelon (Charleston Gray)cpewcgB653
Cp4.1LG05g11010ClCG01G015500Watermelon (Charleston Gray)cpewcgB643
Cp4.1LG05g11010CSPI02G14270Wild cucumber (PI 183967)cpecpiB710
Cp4.1LG05g11010CSPI06G26550Wild cucumber (PI 183967)cpecpiB767
Cp4.1LG05g11010Lsi10G005600Bottle gourd (USVL1VR-Ls)cpelsiB595
Cp4.1LG05g11010CsaV3_2G016810Cucumber (Chinese Long) v3cpecucB0884
Cp4.1LG05g11010CsaV3_6G041730Cucumber (Chinese Long) v3cpecucB0944
Cp4.1LG05g11010Bhi10G001761Wax gourdcpewgoB0952
Cp4.1LG05g11010CsGy6G026000Cucumber (Gy14) v2cgybcpeB866
Cp4.1LG05g11010CsGy2G014150Cucumber (Gy14) v2cgybcpeB245
Cp4.1LG05g11010Carg11647Silver-seed gourdcarcpeB1476
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g11010Cp4.1LG10g03410Cucurbita pepo (Zucchini)cpecpeB098
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g11010Cucumber (Gy14) v1cgycpeB0666
Cp4.1LG05g11010Cucurbita maxima (Rimu)cmacpeB583
Cp4.1LG05g11010Cucurbita moschata (Rifu)cmocpeB532
Cp4.1LG05g11010Melon (DHL92) v3.5.1cpemeB660
Cp4.1LG05g11010Melon (DHL92) v3.5.1cpemeB663
Cp4.1LG05g11010Melon (DHL92) v3.6.1cpemedB791
Cp4.1LG05g11010Melon (DHL92) v3.6.1cpemedB794
Cp4.1LG05g11010Melon (DHL92) v3.6.1cpemedB809