CmoCh02G005850 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G005850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(BHLH transcription factor) (DNA binding protein)
Location	Cmo_Chr02 : 3473200 .. 3473835 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGACATCGACATCCTCAAATCGACACTATCACCTTCCAACTCCATCGACATGTCGTCCACAATCCTCCTCAACAACAACAACAGCTCCCACTACCCTCCACTCCCCTTCTTCTCCGACTTCTCATCTCCCTCCTTCCACACCGCACAGCCAGTGCTGCCGAACCAACAGAACCGGCAGAAGCGCGGCGGCGGCGGGGGCGGGGGCGGGGGCGGGGGCGGGGGAATGGCAGCAATGAGAGAGATGATATTCCGAATAGCAGCAATGCAGCCAATACAAATAGACCCAGAGGAGATAAAGGCGCCAAAGCGGCGAAACGTGAGAATCTCGAAGGACCCACAGAGCGTGGCGGCGCGGCAGCGGAGGGAGAGAATCAGCCAGAAGATTAGGATTCTGCAGCGGCTGGTGCCTGGGGGAACTAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTTCATTATGTGAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAGCAGGCAGGGTTTCACAATGCTAATACTACTAATAATAATAACAACTGTCCTAACCTTAGCTACTCTTCTGCGCTTTTCAAAGCTTGCCAAATGCCCCACGCTCCATCTATGCCTGGCTCTTTGCAAATGCATTGA

mRNA sequence

ATGGACGACATCGACATCCTCAAATCGACACTATCACCTTCCAACTCCATCGACATGTCGTCCACAATCCTCCTCAACAACAACAACAGCTCCCACTACCCTCCACTCCCCTTCTTCTCCGACTTCTCATCTCCCTCCTTCCACACCGCACAGCCAGTGCTGCCGAACCAACAGAACCGGCAGAAGCGCGGCGGCGGCGGGGGCGGGGGCGGGGGCGGGGGCGGGGGAATGGCAGCAATGAGAGAGATGATATTCCGAATAGCAGCAATGCAGCCAATACAAATAGACCCAGAGGAGATAAAGGCGCCAAAGCGGCGAAACGTGAGAATCTCGAAGGACCCACAGAGCGTGGCGGCGCGGCAGCGGAGGGAGAGAATCAGCCAGAAGATTAGGATTCTGCAGCGGCTGGTGCCTGGGGGAACTAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTTCATTATGTGAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAGCAGGCAGGGTTTCACAATGCTAATACTACTAATAATAATAACAACTGTCCTAACCTTAGCTACTCTTCTGCGCTTTTCAAAGCTTGCCAAATGCCCCACGCTCCATCTATGCCTGGCTCTTTGCAAATGCATTGA

Coding sequence (CDS)

ATGGACGACATCGACATCCTCAAATCGACACTATCACCTTCCAACTCCATCGACATGTCGTCCACAATCCTCCTCAACAACAACAACAGCTCCCACTACCCTCCACTCCCCTTCTTCTCCGACTTCTCATCTCCCTCCTTCCACACCGCACAGCCAGTGCTGCCGAACCAACAGAACCGGCAGAAGCGCGGCGGCGGCGGGGGCGGGGGCGGGGGCGGGGGCGGGGGAATGGCAGCAATGAGAGAGATGATATTCCGAATAGCAGCAATGCAGCCAATACAAATAGACCCAGAGGAGATAAAGGCGCCAAAGCGGCGAAACGTGAGAATCTCGAAGGACCCACAGAGCGTGGCGGCGCGGCAGCGGAGGGAGAGAATCAGCCAGAAGATTAGGATTCTGCAGCGGCTGGTGCCTGGGGGAACTAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTTCATTATGTGAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAGCAGGCAGGGTTTCACAATGCTAATACTACTAATAATAATAACAACTGTCCTAACCTTAGCTACTCTTCTGCGCTTTTCAAAGCTTGCCAAATGCCCCACGCTCCATCTATGCCTGGCTCTTTGCAAATGCATTGA

Homology

[Close]

BLAST of CmoCh02G005850 vs. Swiss-Prot
Match: HEC2_ARATH (Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.6e-36
Identity = 95/177 (53.67%), Postives = 115/177 (64.97%), Query Frame = 1


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNSSH-------YPPLPFFSDFS--SPSFHTAQ 60
           M  ++ L    S SN       I++ + +++H       +  LPF        P  +   
Sbjct: 12  MQQMEKLPEHFSNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHHQPGLNFRY 71

Query: 61  PVLPNQQNRQKRGGGGGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRIS 120
              P+    +KRGG           MAAMREMIFRIA MQPI IDPE +K PKR+NVRIS
Sbjct: 72  APSPSSSLPEKRGGCSDNAN-----MAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRIS 131

Query: 121 KDPQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ 169
           KDPQSVAAR RRERIS++IRILQRLVPGGTKMDTASMLDEA+HYVKFLK+QVQ+LE+
Sbjct: 132 KDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE 183

[Close]

BLAST of CmoCh02G005850 vs. Swiss-Prot
Match: HEC1_ARATH (Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.9e-35
Identity = 92/152 (60.53%), Postives = 102/152 (67.11%), Query Frame = 1


Query: 29  NSSHYPPLPFFSDFS---SPSFHTAQPVLPNQQNRQKRGG---------GGGGGGGGGGG 88
           NS+HY      SD S    P F     +L N  +                       G  
Sbjct: 40  NSTHYQ-----SDHSMTNEPGFRYGSGLLTNPSSISPNTAYSSVFLDKRNNSNNNNNGTN 99

Query: 89  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 148
           MAAMREMIFRIA MQPI IDPE +K PKRRNVRISKDPQSVAAR RRERIS++IRILQRL
Sbjct: 100 MAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISERIRILQRL 159

Query: 149 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ 169
           VPGGTKMDTASMLDEA+HYVKFLK+QVQ+LE+
Sbjct: 160 VPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE 186

[Close]

BLAST of CmoCh02G005850 vs. Swiss-Prot
Match: HEC3_ARATH (Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 80/143 (55.94%), Postives = 99/143 (69.23%), Query Frame = 1


Query: 24  LLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNRQKRGGGGGGGGGGGGGMAAMREM 83
           + N  +SSH+PPL       S S  T   +  +Q++ +         G       AM+EM
Sbjct: 53  IFNPFSSSHFPPL-------SSSLTTTTLLSGDQEDDEDEEEPLEELG-------AMKEM 112

Query: 84  IFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKM 143
           +++IAAMQ + IDP  +K PKRRNVRIS DPQSVAAR RRERIS++IRILQRLVPGGTKM
Sbjct: 113 MYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKM 172

Query: 144 DTASMLDEAVHYVKFLKRQVQTL 167
           DTASMLDEA+ YVKFLKRQ++ L
Sbjct: 173 DTASMLDEAIRYVKFLKRQIRLL 181

[Close]

BLAST of CmoCh02G005850 vs. Swiss-Prot
Match: IND_ARATH (Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3)

HSP 1 Score: 125.2 bits (313), Expect = 8.7e-28
Identity = 66/107 (61.68%), Postives = 79/107 (73.83%), Query Frame = 1


Query: 77  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 136
           M AM+EM + IA MQP+ IDP  +  P RRNVRIS DPQ+V AR+RRERIS+KIRIL+R+
Sbjct: 85  MDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRI 144

Query: 137 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNC 184
           VPGG KMDTASMLDEA+ Y KFLKRQV+ L+      A   N +  C
Sbjct: 145 VPGGAKMDTASMLDEAIRYTKFLKRQVRILQPHSQIGAPMANPSYLC 191

[Close]

BLAST of CmoCh02G005850 vs. Swiss-Prot
Match: BH087_ARATH (Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.3e-27
Identity = 68/115 (59.13%), Postives = 85/115 (73.91%), Query Frame = 1


Query: 77  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 136
           +A M+EMI+R AA +P+    E ++ PKR+NV+IS DPQ+VAARQRRERIS+KIR+LQ L
Sbjct: 242 IAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQTL 301

Query: 137 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNCPNLSYSSA 192
           VPGGTKMDTASMLDEA +Y+KFL+ QV+ LE        T        NLS+SSA
Sbjct: 302 VPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQT--------NLSFSSA 348

[Close]

BLAST of CmoCh02G005850 vs. TrEMBL
Match: A0A0A0LJI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285890 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.9e-62
Identity = 153/227 (67.40%), Postives = 165/227 (72.69%), Query Frame = 1


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNN---NNSSHY----PPLPFFSDFSSPS----FHT 60
           MDDIDILKSTLS S   DMSST   NN   N + H     PP  +FSD+S P     F T
Sbjct: 1   MDDIDILKSTLSQS---DMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQT 60

Query: 61  AQPVLPNQQNRQKRGGGGGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVR 120
              ++P    RQ+R G  GG      GMAAMREMIFRIAAMQP++IDPE IKAPKRRNVR
Sbjct: 61  TPTIIPETPARQRRSGVSGG------GMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVR 120

Query: 121 ISKDPQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQA 180
           ISKDPQSVAAR RRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQA
Sbjct: 121 ISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQA 180

Query: 181 GFHNANTTNNNN------NCPNLSYSSALFKACQMPHAPSMPGSLQM 211
           GF+  N  NNNN      N  NL+Y+SALFKACQ+     MP SLQM
Sbjct: 181 GFNYNNNNNNNNNFNNFVNSANLNYASALFKACQI-----MPASLQM 213

[Close]

BLAST of CmoCh02G005850 vs. TrEMBL
Match: A0A0B2SA94_GLYSO (Transcription factor HEC1 OS=Glycine soja GN=glysoja_003825 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.8e-41
Identity = 122/240 (50.83%), Postives = 145/240 (60.42%), Query Frame = 1


Query: 3   DIDILKSTLSPSNSIDMSSTILL-------------NNNNSSHYP-------------PL 62
           D+DILK++ S + S+DM  T++              NNNN+S  P              L
Sbjct: 2   DVDILKTSTSDNISMDMMMTMMQMEKFPEFCEPFYNNNNNTSTAPLYPENELLINSTTTL 61

Query: 63  PFFSDF-----------SSPSFHTAQPVLPN-QQNRQKRGGGGGGGGGGGGGMAAMREMI 122
           P FS+            SS +F   QP+ P+ + N +KR             +AAMREMI
Sbjct: 62  PVFSNVINNPNVITPPPSSSNFIQQQPMTPHLEPNLEKRNS-----------VAAMREMI 121

Query: 123 FRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMD 182
           FR+A MQPI IDPE IK PKRRNV+ISKDPQSVAAR RRERIS++IRILQRLVPGGTKMD
Sbjct: 122 FRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMD 181

Query: 183 TASMLDEAVHYVKFLKRQVQTLEQAGFHN-------ANTTNNNNNCPNLSYSSALFKACQ 198
           TASMLDEA+HYVKFLK+QVQTLEQAG            T +N NN  N SY S   K+CQ
Sbjct: 182 TASMLDEAIHYVKFLKKQVQTLEQAGASRPLNVVGFPTTASNANN--NNSY-SGFVKSCQ 227

[Close]

BLAST of CmoCh02G005850 vs. TrEMBL
Match: I1LHE1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G055300 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.8e-41
Identity = 122/240 (50.83%), Postives = 145/240 (60.42%), Query Frame = 1


Query: 3   DIDILKSTLSPSNSIDMSSTILL-------------NNNNSSHYP-------------PL 62
           D+DILK++ S + S+DM  T++              NNNN+S  P              L
Sbjct: 2   DVDILKTSTSDNISMDMMMTMMQMEKFPEFCEPFYNNNNNTSTAPLYPENELLINSTTTL 61

Query: 63  PFFSDF-----------SSPSFHTAQPVLPN-QQNRQKRGGGGGGGGGGGGGMAAMREMI 122
           P FS+            SS +F   QP+ P+ + N +KR             +AAMREMI
Sbjct: 62  PVFSNVINNPNVITPPPSSSNFIQQQPMTPHLEPNLEKRNS-----------VAAMREMI 121

Query: 123 FRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMD 182
           FR+A MQPI IDPE IK PKRRNV+ISKDPQSVAAR RRERIS++IRILQRLVPGGTKMD
Sbjct: 122 FRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMD 181

Query: 183 TASMLDEAVHYVKFLKRQVQTLEQAGFHN-------ANTTNNNNNCPNLSYSSALFKACQ 198
           TASMLDEA+HYVKFLK+QVQTLEQAG            T +N NN  N SY S   K+CQ
Sbjct: 182 TASMLDEAIHYVKFLKKQVQTLEQAGASRPLNVVGFPTTASNANN--NNSY-SGFVKSCQ 227

[Close]

BLAST of CmoCh02G005850 vs. TrEMBL
Match: B9SC79_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1408840 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.1e-40
Identity = 98/136 (72.06%), Postives = 110/136 (80.88%), Query Frame = 1


Query: 78  AAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLV 137
           AA+REMIFRIAAMQPI IDPE IK PKRRNV+ISKDPQSVAAR RRERIS++IRILQRLV
Sbjct: 143 AAIREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLV 202

Query: 138 PGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFH---NANTTNNNNNCPNLSYSSALFK 197
           PGGTKMDTASMLDEA+HYVKFLK+QVQ+LEQAG +    A    +    PN+ YSS L K
Sbjct: 203 PGGTKMDTASMLDEAIHYVKFLKKQVQSLEQAGANRSMGAGFPFSGLTMPNMGYSS-LLK 262

Query: 198 ACQMPHAPSMPGSLQM 211
            CQ  H P+M  S+QM
Sbjct: 263 NCQPAH-PNMVSSMQM 276

[Close]

BLAST of CmoCh02G005850 vs. TrEMBL
Match: C6TJ68_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.0e-40
Identity = 124/250 (49.60%), Postives = 148/250 (59.20%), Query Frame = 1


Query: 3   DIDILKSTLSPSNSIDMSSTILL-------------NNNNSSHYP-------------PL 62
           D+DILK++ S + S+DM  T++              NNNN+S  P              L
Sbjct: 2   DVDILKTSTSDNISMDMMMTMMQMEKFPEFCEPFYNNNNNTSTAPLYPENELLINSTTTL 61

Query: 63  PFFSDF-----------SSPSFHTAQPVLPN-QQNRQKRGGGGGGGGGGGGGMAAMREMI 122
           P FS+            SS +F   QP+ P+ + N +KR             +AAMREMI
Sbjct: 62  PVFSNVINNPNVITPPPSSSNFIQQQPMTPHLEPNLEKRNS-----------VAAMREMI 121

Query: 123 FRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMD 182
           FR+A MQPI IDPE IK PKRRNV+ISKDPQSVAAR RRERIS++I+ILQRLVPGGTKMD
Sbjct: 122 FRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIKILQRLVPGGTKMD 181

Query: 183 TASMLDEAVHYVKFLKRQVQTLEQAGFHN-------ANTTNNNNNCPNLSYSSALFKACQ 208
           TASMLDEA+HYVKFLK+QVQTLEQAG            T +N NN  N SY S   K+C 
Sbjct: 182 TASMLDEAIHYVKFLKKQVQTLEQAGASRPLNVVGFPTTASNANN--NNSY-SGFVKSC- 234

[Close]

BLAST of CmoCh02G005850 vs. TAIR10
Match: AT3G50330.1 (AT3G50330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 152.1 bits (383), Expect = 3.7e-37
Identity = 95/177 (53.67%), Postives = 115/177 (64.97%), Query Frame = 1


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNSSH-------YPPLPFFSDFS--SPSFHTAQ 60
           M  ++ L    S SN       I++ + +++H       +  LPF        P  +   
Sbjct: 12  MQQMEKLPEHFSNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHHQPGLNFRY 71

Query: 61  PVLPNQQNRQKRGGGGGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRIS 120
              P+    +KRGG           MAAMREMIFRIA MQPI IDPE +K PKR+NVRIS
Sbjct: 72  APSPSSSLPEKRGGCSDNAN-----MAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRIS 131

Query: 121 KDPQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ 169
           KDPQSVAAR RRERIS++IRILQRLVPGGTKMDTASMLDEA+HYVKFLK+QVQ+LE+
Sbjct: 132 KDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE 183

[Close]

BLAST of CmoCh02G005850 vs. TAIR10
Match: AT5G67060.1 (AT5G67060.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-36
Identity = 92/152 (60.53%), Postives = 102/152 (67.11%), Query Frame = 1


Query: 29  NSSHYPPLPFFSDFS---SPSFHTAQPVLPNQQNRQKRGG---------GGGGGGGGGGG 88
           NS+HY      SD S    P F     +L N  +                       G  
Sbjct: 40  NSTHYQ-----SDHSMTNEPGFRYGSGLLTNPSSISPNTAYSSVFLDKRNNSNNNNNGTN 99

Query: 89  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 148
           MAAMREMIFRIA MQPI IDPE +K PKRRNVRISKDPQSVAAR RRERIS++IRILQRL
Sbjct: 100 MAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISERIRILQRL 159

Query: 149 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ 169
           VPGGTKMDTASMLDEA+HYVKFLK+QVQ+LE+
Sbjct: 160 VPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE 186

[Close]

BLAST of CmoCh02G005850 vs. TAIR10
Match: AT5G09750.1 (AT5G09750.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 131.3 bits (329), Expect = 6.8e-31
Identity = 80/143 (55.94%), Postives = 99/143 (69.23%), Query Frame = 1


Query: 24  LLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNRQKRGGGGGGGGGGGGGMAAMREM 83
           + N  +SSH+PPL       S S  T   +  +Q++ +         G       AM+EM
Sbjct: 53  IFNPFSSSHFPPL-------SSSLTTTTLLSGDQEDDEDEEEPLEELG-------AMKEM 112

Query: 84  IFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKM 143
           +++IAAMQ + IDP  +K PKRRNVRIS DPQSVAAR RRERIS++IRILQRLVPGGTKM
Sbjct: 113 MYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKM 172

Query: 144 DTASMLDEAVHYVKFLKRQVQTL 167
           DTASMLDEA+ YVKFLKRQ++ L
Sbjct: 173 DTASMLDEAIRYVKFLKRQIRLL 181

[Close]

BLAST of CmoCh02G005850 vs. TAIR10
Match: AT4G00120.1 (AT4G00120.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 125.2 bits (313), Expect = 4.9e-29
Identity = 66/107 (61.68%), Postives = 79/107 (73.83%), Query Frame = 1


Query: 77  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 136
           M AM+EM + IA MQP+ IDP  +  P RRNVRIS DPQ+V AR+RRERIS+KIRIL+R+
Sbjct: 85  MDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRI 144

Query: 137 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNC 184
           VPGG KMDTASMLDEA+ Y KFLKRQV+ L+      A   N +  C
Sbjct: 145 VPGGAKMDTASMLDEAIRYTKFLKRQVRILQPHSQIGAPMANPSYLC 191

[Close]

BLAST of CmoCh02G005850 vs. TAIR10
Match: AT3G21330.1 (AT3G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-28
Identity = 68/115 (59.13%), Postives = 85/115 (73.91%), Query Frame = 1


Query: 77  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 136
           +A M+EMI+R AA +P+    E ++ PKR+NV+IS DPQ+VAARQRRERIS+KIR+LQ L
Sbjct: 242 IAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQTL 301

Query: 137 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNCPNLSYSSA 192
           VPGGTKMDTASMLDEA +Y+KFL+ QV+ LE        T        NLS+SSA
Sbjct: 302 VPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQT--------NLSFSSA 348

[Close]

BLAST of CmoCh02G005850 vs. NCBI nr
Match: gi|659115951|ref|XP_008457823.1| (PREDICTED: transcription factor HEC2-like [Cucumis melo])

HSP 1 Score: 246.1 bits (627), Expect = 5.4e-62
Identity = 152/224 (67.86%), Postives = 163/224 (72.77%), Query Frame = 1


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNN-NNSSHYPPLPFFSDFSSPS----FHTAQPVLP 60
           MDDIDILKSTLSPS   DMSST   NN        P P+FSD+S P     F T   ++P
Sbjct: 1   MDDIDILKSTLSPS---DMSSTFFPNNCPQLLPVIPPPYFSDYSPPPGTSLFQTTPTIIP 60

Query: 61  NQQNRQKRGGGGGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQ 120
               RQ+R G  GG      GMAAMREMIFRIAAMQP++IDPE IKAPKRRNVRISKDPQ
Sbjct: 61  EAPARQRRSGVSGG------GMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQ 120

Query: 121 SVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNAN 180
           SVAAR RRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF+  N
Sbjct: 121 SVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNN 180

Query: 181 TTNNNN---------NCPNLSYSSALFKACQMPHAPSMPGSLQM 211
             NNNN         N  NL+Y+SALFKACQ+     MP SLQM
Sbjct: 181 NNNNNNNNNNFNNFVNSANLNYASALFKACQI-----MPASLQM 210

[Close]

BLAST of CmoCh02G005850 vs. NCBI nr
Match: gi|700206886|gb|KGN62005.1| (hypothetical protein Csa_2G285890 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 7.0e-62
Identity = 153/227 (67.40%), Postives = 165/227 (72.69%), Query Frame = 1


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNN---NNSSHY----PPLPFFSDFSSPS----FHT 60
           MDDIDILKSTLS S   DMSST   NN   N + H     PP  +FSD+S P     F T
Sbjct: 1   MDDIDILKSTLSQS---DMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQT 60

Query: 61  AQPVLPNQQNRQKRGGGGGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVR 120
              ++P    RQ+R G  GG      GMAAMREMIFRIAAMQP++IDPE IKAPKRRNVR
Sbjct: 61  TPTIIPETPARQRRSGVSGG------GMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVR 120

Query: 121 ISKDPQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQA 180
           ISKDPQSVAAR RRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQA
Sbjct: 121 ISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQA 180

Query: 181 GFHNANTTNNNN------NCPNLSYSSALFKACQMPHAPSMPGSLQM 211
           GF+  N  NNNN      N  NL+Y+SALFKACQ+     MP SLQM
Sbjct: 181 GFNYNNNNNNNNNFNNFVNSANLNYASALFKACQI-----MPASLQM 213

[Close]

BLAST of CmoCh02G005850 vs. NCBI nr
Match: gi|734423164|gb|KHN42085.1| (Transcription factor HEC1 [Glycine soja])

HSP 1 Score: 176.0 bits (445), Expect = 6.8e-41
Identity = 122/240 (50.83%), Postives = 145/240 (60.42%), Query Frame = 1


Query: 3   DIDILKSTLSPSNSIDMSSTILL-------------NNNNSSHYP-------------PL 62
           D+DILK++ S + S+DM  T++              NNNN+S  P              L
Sbjct: 2   DVDILKTSTSDNISMDMMMTMMQMEKFPEFCEPFYNNNNNTSTAPLYPENELLINSTTTL 61

Query: 63  PFFSDF-----------SSPSFHTAQPVLPN-QQNRQKRGGGGGGGGGGGGGMAAMREMI 122
           P FS+            SS +F   QP+ P+ + N +KR             +AAMREMI
Sbjct: 62  PVFSNVINNPNVITPPPSSSNFIQQQPMTPHLEPNLEKRNS-----------VAAMREMI 121

Query: 123 FRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMD 182
           FR+A MQPI IDPE IK PKRRNV+ISKDPQSVAAR RRERIS++IRILQRLVPGGTKMD
Sbjct: 122 FRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMD 181

Query: 183 TASMLDEAVHYVKFLKRQVQTLEQAGFHN-------ANTTNNNNNCPNLSYSSALFKACQ 198
           TASMLDEA+HYVKFLK+QVQTLEQAG            T +N NN  N SY S   K+CQ
Sbjct: 182 TASMLDEAIHYVKFLKKQVQTLEQAGASRPLNVVGFPTTASNANN--NNSY-SGFVKSCQ 227

[Close]

BLAST of CmoCh02G005850 vs. NCBI nr
Match: gi|1021514246|ref|XP_016200633.1| (PREDICTED: transcription factor HEC2 [Arachis ipaensis])

HSP 1 Score: 174.9 bits (442), Expect = 1.5e-40
Identity = 95/139 (68.35%), Postives = 107/139 (76.98%), Query Frame = 1


Query: 77  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 136
           MAAMREMIFR+A MQP+ IDPE IK PKRRNV+ISKDPQSVAAR RRERIS++IRILQRL
Sbjct: 114 MAAMREMIFRVAVMQPVHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRL 173

Query: 137 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNN--------NNCPNLSY 196
           VPGGTKMDTASMLDEA+HYVKFLK+QVQTLEQAG     T NNN        ++  N S 
Sbjct: 174 VPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAG--GGRTCNNNGFTGFSSSSSSINASN 233

Query: 197 SSALFKACQMPHAPSMPGS 208
             A+ K C  P+ P + GS
Sbjct: 234 YPAMVKGCHQPYPPMLMGS 250

[Close]

BLAST of CmoCh02G005850 vs. NCBI nr
Match: gi|255565212|ref|XP_002523598.1| (PREDICTED: transcription factor HEC1 [Ricinus communis])

HSP 1 Score: 173.3 bits (438), Expect = 4.4e-40
Identity = 98/136 (72.06%), Postives = 110/136 (80.88%), Query Frame = 1


Query: 78  AAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLV 137
           AA+REMIFRIAAMQPI IDPE IK PKRRNV+ISKDPQSVAAR RRERIS++IRILQRLV
Sbjct: 143 AAIREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLV 202

Query: 138 PGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFH---NANTTNNNNNCPNLSYSSALFK 197
           PGGTKMDTASMLDEA+HYVKFLK+QVQ+LEQAG +    A    +    PN+ YSS L K
Sbjct: 203 PGGTKMDTASMLDEAIHYVKFLKKQVQSLEQAGANRSMGAGFPFSGLTMPNMGYSS-LLK 262

Query: 198 ACQMPHAPSMPGSLQM 211
            CQ  H P+M  S+QM
Sbjct: 263 NCQPAH-PNMVSSMQM 276

The following BLAST results are available for this feature:

BLAST of CmoCh02G005850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HEC2_ARATH	6.6e-36	53.67	Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1	[more]
HEC1_ARATH	1.9e-35	60.53	Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1	[more]
HEC3_ARATH	1.2e-29	55.94	Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1	[more]
IND_ARATH	8.7e-28	61.68	Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3	[more]
BH087_ARATH	3.3e-27	59.13	Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1	[more]

BLAST of CmoCh02G005850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJI7_CUCSA	4.9e-62	67.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285890 PE=4 SV=1	[more]
A0A0B2SA94_GLYSO	4.8e-41	50.83	Transcription factor HEC1 OS=Glycine soja GN=glysoja_003825 PE=4 SV=1	[more]
I1LHE1_SOYBN	4.8e-41	50.83	Uncharacterized protein OS=Glycine max GN=GLYMA_11G055300 PE=4 SV=1	[more]
B9SC79_RICCO	3.1e-40	72.06	DNA binding protein, putative OS=Ricinus communis GN=RCOM_1408840 PE=4 SV=1	[more]
C6TJ68_SOYBN	4.0e-40	49.60	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]

BLAST of CmoCh02G005850 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G50330.1	3.7e-37	53.67	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G67060.1	1.1e-36	60.53	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	6.8e-31	55.94	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G00120.1	4.9e-29	61.68	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	1.9e-28	59.13	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of CmoCh02G005850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115951\|ref\|XP_008457823.1\|	5.4e-62	67.86	PREDICTED: transcription factor HEC2-like [Cucumis melo]	[more]
gi\|700206886\|gb\|KGN62005.1\|	7.0e-62	67.40	hypothetical protein Csa_2G285890 [Cucumis sativus]	[more]
gi\|734423164\|gb\|KHN42085.1\|	6.8e-41	50.83	Transcription factor HEC1 [Glycine soja]	[more]
gi\|1021514246\|ref\|XP_016200633.1\|	1.5e-40	68.35	PREDICTED: transcription factor HEC2 [Arachis ipaensis]	[more]
gi\|255565212\|ref\|XP_002523598.1\|	4.4e-40	72.06	PREDICTED: transcription factor HEC1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G005850.1	CmoCh02G005850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 111..169 score: 6.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 119..159 score: 1.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 116..165 score: 9.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 110..159 score: 15
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 114..169 score: 2.36
None	No IPR available	unknown	Coil	Coil	coord: 149..169 scor
None	No IPR available	PANTHER	PTHR12565	STEROL REGULATORY ELEMENT-BINDING PROTEIN	coord: 77..168 score: 8.7
None	No IPR available	PANTHER	PTHR12565:SF74	TRANSCRIPTION FACTOR HEC1	coord: 77..168 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G005850	Cucsa.101020	Cucumber (Gy14) v1	cgycmoB0225
CmoCh02G005850	Cucsa.366890	Cucumber (Gy14) v1	cgycmoB1018
CmoCh02G005850	CmaCh02G005770	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G005850	CmaCh03G010890	Cucurbita maxima (Rimu)	cmacmoB652
CmoCh02G005850	Cla020193	Watermelon (97103) v1	cmowmB596
CmoCh02G005850	Cla008442	Watermelon (97103) v1	cmowmB574
CmoCh02G005850	Csa2G285890	Cucumber (Chinese Long) v2	cmocuB581
CmoCh02G005850	Csa6G483450	Cucumber (Chinese Long) v2	cmocuB619
CmoCh02G005850	MELO3C020892	Melon (DHL92) v3.5.1	cmomeB535
CmoCh02G005850	ClCG01G015500	Watermelon (Charleston Gray)	cmowcgB519
CmoCh02G005850	ClCG02G012720	Watermelon (Charleston Gray)	cmowcgB547
CmoCh02G005850	CSPI06G26550	Wild cucumber (PI 183967)	cmocpiB624
CmoCh02G005850	CSPI02G14270	Wild cucumber (PI 183967)	cmocpiB586
CmoCh02G005850	Lsi10G005600	Bottle gourd (USVL1VR-Ls)	cmolsiB538
CmoCh02G005850	Cp4.1LG05g11010	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G005850	Cp4.1LG10g03410	Cucurbita pepo (Zucchini)	cmocpeB547
CmoCh02G005850	CsaV3_6G041730	Cucumber (Chinese Long) v3	cmocucB0738
CmoCh02G005850	CsaV3_2G016810	Cucumber (Chinese Long) v3	cmocucB0692
CmoCh02G005850	Cla97C01G014450	Watermelon (97103) v2	cmowmbB579
CmoCh02G005850	Cla97C02G038410	Watermelon (97103) v2	cmowmbB610
CmoCh02G005850	Bhi10G001761	Wax gourd	cmowgoB0753
CmoCh02G005850	CsGy2G014150	Cucumber (Gy14) v2	cgybcmoB225
CmoCh02G005850	CsGy6G026000	Cucumber (Gy14) v2	cgybcmoB796
CmoCh02G005850	Carg11647	Silver-seed gourd	carcmoB1422

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G005850	CmoCh03G010750	Cucurbita moschata (Rifu)	cmocmoB431

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G005850	Cucumber (Chinese Long) v3	cmocucB0682
CmoCh02G005850	Wax gourd	cmowgoB0741
CmoCh02G005850	Cucurbita maxima (Rimu)	cmacmoB565
CmoCh02G005850	Wild cucumber (PI 183967)	cmocpiB576
CmoCh02G005850	Cucumber (Chinese Long) v2	cmocuB571
CmoCh02G005850	Cucurbita pepo (Zucchini)	cmocpeB548
CmoCh02G005850	Cucurbita pepo (Zucchini)	cmocpeB573
CmoCh02G005850	Bottle gourd (USVL1VR-Ls)	cmolsiB531
CmoCh02G005850	Cucumber (Gy14) v2	cgybcmoB217
CmoCh02G005850	Melon (DHL92) v3.6.1	cmomedB611