CmoCh03G010750 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G010750
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(BHLH transcription factor) (DNA binding protein)
Location	Cmo_Chr03 : 8046980 .. 8047914 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTCCAAACCCCATACCCTACCTTTTCCTTCTCCCCCATCACCCTCCTCCATGGAGCCCCATCACCTCTCAAACCCTTCTCCCCATCTCCATCACTCCGCCATGGAAGACCATCATATCCTTCACCGTCATCACCACGTCCACGTCCACGACCCTGACCCTGATCCTGACCCTGACCCTGACCCTGATTCCATTTGGTCGTCGTTGTTGCCTTTTCATCTCCCCGACCCTCATCAACAATTCCCTAGCTCCTCAACCCACCTGTTGATCAGCTACGGTATGTTCACTACTCCTACTTTGATATCATGTTAAATTATCGATCATCATATGTTTAATTCTTTTTTTGTATTGTGTATAGCTACTCCGAGTTCTAGGGTAGATAATGACGAAGAGCCGGAAGAAGAGCTTGGTGCCATGAAAGAGATGATGTATAAGATCGCCGCAATGCAACCGGTGGATATCGATCCTTCGACTATCCGAAAGCCCAAACGACGAAATGTACGGATTAGCGATGACCCGCAAAGCATTGCAGCTCGTCTTCGACGAGAGAGGATCAGTGAGAAGATCAGAATTCTTCAAAGGCTTGTGCCTGGTGGGACGAAGATGGACACAGCTTCAATGCTGGATGAAGCAATTCGCTATGTCAAATTCTTAAAGAGGCAAATCCGGTTGCTGCAGTCAAGTGATCAGCCGCAACAGCCAAGCACTGACGGCGGAGCCGCCGCTGGAGGGTGGCCTCTTACATTCCATAAGGCTGATGGCTCAGCCTCCTCGTCCACGTCCATGGAGACTACGCCTGCCATTATTACACCATCAGGATGGTGAGATAATCAATATTTACTTAATTAATTACATGATTACGAGTAATTACTAATGAATTAGAGTGATGCTTAAATTAATATGTCGTAATGGTACCTTCAAAAAAAAATACTAAG

mRNA sequence

CCCTCCAAACCCCATACCCTACCTTTTCCTTCTCCCCCATCACCCTCCTCCATGGAGCCCCATCACCTCTCAAACCCTTCTCCCCATCTCCATCACTCCGCCATGGAAGACCATCATATCCTTCACCGTCATCACCACGTCCACGTCCACGACCCTGACCCTGATCCTGACCCTGACCCTGACCCTGATTCCATTTGGTCGTCGTTGTTGCCTTTTCATCTCCCCGACCCTCATCAACAATTCCCTAGCTCCTCAACCCACCTGTTGATCAGCTACGCTACTCCGAGTTCTAGGGTAGATAATGACGAAGAGCCGGAAGAAGAGCTTGGTGCCATGAAAGAGATGATGTATAAGATCGCCGCAATGCAACCGGTGGATATCGATCCTTCGACTATCCGAAAGCCCAAACGACGAAATGTACGGATTAGCGATGACCCGCAAAGCATTGCAGCTCGTCTTCGACGAGAGAGGATCAGTGAGAAGATCAGAATTCTTCAAAGGCTTGTGCCTGGTGGGACGAAGATGGACACAGCTTCAATGCTGGATGAAGCAATTCGCTATGTCAAATTCTTAAAGAGGCAAATCCGGTTGCTGCAGTCAAGTGATCAGCCGCAACAGCCAAGCACTGACGGCGGAGCCGCCGCTGGAGGGTGGCCTCTTACATTCCATAAGGCTGATGGCTCAGCCTCCTCGTCCACGTCCATGGAGACTACGCCTGCCATTATTACACCATCAGGATGGTGAGATAATCAATATTTACTTAATTAATTACATGATTACGAGTAATTACTAATGAATTAGAGTGATGCTTAAATTAATATGTCGTAATGGTACCTTCAAAAAAAAATACTAAG

Coding sequence (CDS)

ATGGAGCCCCATCACCTCTCAAACCCTTCTCCCCATCTCCATCACTCCGCCATGGAAGACCATCATATCCTTCACCGTCATCACCACGTCCACGTCCACGACCCTGACCCTGATCCTGACCCTGACCCTGACCCTGATTCCATTTGGTCGTCGTTGTTGCCTTTTCATCTCCCCGACCCTCATCAACAATTCCCTAGCTCCTCAACCCACCTGTTGATCAGCTACGCTACTCCGAGTTCTAGGGTAGATAATGACGAAGAGCCGGAAGAAGAGCTTGGTGCCATGAAAGAGATGATGTATAAGATCGCCGCAATGCAACCGGTGGATATCGATCCTTCGACTATCCGAAAGCCCAAACGACGAAATGTACGGATTAGCGATGACCCGCAAAGCATTGCAGCTCGTCTTCGACGAGAGAGGATCAGTGAGAAGATCAGAATTCTTCAAAGGCTTGTGCCTGGTGGGACGAAGATGGACACAGCTTCAATGCTGGATGAAGCAATTCGCTATGTCAAATTCTTAAAGAGGCAAATCCGGTTGCTGCAGTCAAGTGATCAGCCGCAACAGCCAAGCACTGACGGCGGAGCCGCCGCTGGAGGGTGGCCTCTTACATTCCATAAGGCTGATGGCTCAGCCTCCTCGTCCACGTCCATGGAGACTACGCCTGCCATTATTACACCATCAGGATGGTGA

Homology

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BLAST of CmoCh03G010750 vs. Swiss-Prot
Match: HEC3_ARATH (Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.0e-41
Identity = 102/159 (64.15%), Postives = 115/159 (72.33%), Query Frame = 1


Query: 27  HHHVHVHDPDPDPDPDPDPDSIWSSLLPFHLPDPHQQFPSSSTHLLISYATPSSRVDNDE 86
           HHH H +DP            I++     H P      P SS+    +  +     D DE
Sbjct: 32  HHHQHNNDPIGMAMDQYTQLHIFNPFSSSHFP------PLSSSLTTTTLLSGDQEDDEDE 91

Query: 87  E-PEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKI 146
           E P EELGAMKEMMYKIAAMQ VDIDP+T++KPKRRNVRISDDPQS+AAR RRERISE+I
Sbjct: 92  EEPLEELGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERI 151

Query: 147 RILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS 185
           RILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL ++
Sbjct: 152 RILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNN 184

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BLAST of CmoCh03G010750 vs. Swiss-Prot
Match: IND_ARATH (Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3)

HSP 1 Score: 159.1 bits (401), Expect = 5.9e-38
Identity = 84/135 (62.22%), Postives = 100/135 (74.07%), Query Frame = 1


Query: 57  LPDPHQQFPSSSTHLLISYATPSS-RVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTI 116
           L   H  F +   HL++     +   +D DEE +E++ AMKEM Y IA MQPVDIDP+T+
Sbjct: 49  LTQEHAAFLNDPHHLMLDPPPETLIHLDEDEEYDEDMDAMKEMQYMIAVMQPVDIDPATV 108

Query: 117 RKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLK 176
            KP RRNVRISDDPQ++ AR RRERISEKIRIL+R+VPGG KMDTASMLDEAIRY KFLK
Sbjct: 109 PKPNRRNVRISDDPQTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLK 168

Query: 177 RQIRLLQSSDQPQQP 191
           RQ+R+LQ   Q   P
Sbjct: 169 RQVRILQPHSQIGAP 183

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BLAST of CmoCh03G010750 vs. Swiss-Prot
Match: HEC1_ARATH (Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-32
Identity = 74/117 (63.25%), Postives = 89/117 (76.07%), Query Frame = 1


Query: 84  NDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISE 143
           N+      + AM+EM+++IA MQP+ IDP  ++ PKRRNVRIS DPQS+AAR RRERISE
Sbjct: 87  NNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISE 146

Query: 144 KIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQQPSTDGGAAAGG 201
           +IRILQRLVPGGTKMDTASMLDEAI YVKFLK+Q++ L+     Q   T GG   GG
Sbjct: 147 RIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE----QAVVTGGGGGGGG 199

[Close]

BLAST of CmoCh03G010750 vs. Swiss-Prot
Match: HEC2_ARATH (Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.8e-32
Identity = 87/177 (49.15%), Postives = 112/177 (63.28%), Query Frame = 1


Query: 40  DPDPDPDSIW----SSLLPFHLPDPHQQFPSSSTH------LLISYA-TPSSRVDNDE-- 99
           +P+P+P +I     S+  PF     H   P   T       L   YA +PSS +      
Sbjct: 26  NPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHHQPGLNFRYAPSPSSSLPEKRGG 85

Query: 100 -EPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKI 159
                 + AM+EM+++IA MQP+ IDP +++ PKR+NVRIS DPQS+AAR RRERISE+I
Sbjct: 86  CSDNANMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRRERISERI 145

Query: 160 RILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS---DQPQQPSTDGGAAAG 200
           RILQRLVPGGTKMDTASMLDEAI YVKFLK+Q++ L+     +     +  GGA AG
Sbjct: 146 RILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEHAVVNGGGMTAVAGGALAG 202

[Close]

BLAST of CmoCh03G010750 vs. Swiss-Prot
Match: BH087_ARATH (Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.5e-28
Identity = 70/135 (51.85%), Postives = 93/135 (68.89%), Query Frame = 1


Query: 73  ISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSI 132
           IS+   +   DN E   E +  MKEM+Y+ AA +PV+     + KPKR+NV+IS DPQ++
Sbjct: 223 ISFQHSTCLSDNVEPDAEAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTV 282

Query: 133 AARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS-SDQPQQPS 192
           AAR RRERISEKIR+LQ LVPGGTKMDTASMLDEA  Y+KFL+ Q++ L++   +  Q +
Sbjct: 283 AARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQTN 342

Query: 193 TDGGAAAGGWPLTFH 207
               +A   +PL FH
Sbjct: 343 LSFSSAPTSFPL-FH 356

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BLAST of CmoCh03G010750 vs. TrEMBL
Match: A0A0A0KHS6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483450 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.1e-86
Identity = 182/236 (77.12%), Postives = 192/236 (81.36%), Query Frame = 1


Query: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDPDPDSIWSSLLPFHLPDP 60
           M+PHHLSNP PHL  SAM+DHHILH HHHVH            D DSIW S LPF L D 
Sbjct: 1   MDPHHLSNPPPHLDRSAMDDHHILHHHHHVH------------DLDSIWPSFLPFQLSDH 60

Query: 61  H-QQFPSSSTHLLISYATPSSRV-DNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKP 120
           H QQ P+SSTH +I Y+TPSS   D++EEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKP
Sbjct: 61  HDQQLPTSSTHFVIGYSTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKP 120

Query: 121 KRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQI 180
           KRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQI
Sbjct: 121 KRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQI 180

Query: 181 RLLQSSDQPQQPSTDGGA----AAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 231
           RLLQSS  PQQPST GGA      GGW   F+KA+GS SSSTSME TPA ITP+GW
Sbjct: 181 RLLQSSQPPQQPSTSGGATTAGGGGGWHFPFNKANGSTSSSTSMENTPA-ITPTGW 223

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BLAST of CmoCh03G010750 vs. TrEMBL
Match: A0A059B9E7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04946 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.7e-47
Identity = 121/191 (63.35%), Postives = 132/191 (69.11%), Query Frame = 1


Query: 18  MEDH--HILHRHHHVHVHDPDPDPDPDPDPDSIWSSLLPFHLPDPHQQFPSSSTHLLISY 77
           MED   H   +HHH             P   S+W S+   HLP  HQ  P++S      +
Sbjct: 19  MEDQTLHSNDQHHH------------QPPFTSLWPSI---HLPLMHQTTPTTSQIPSSHF 78

Query: 78  ATPSSR-------VDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDD 137
              SS         D DEEPEEELGAMKEMMYKIA MQPVD+DP+TIRKPKRRNVRISDD
Sbjct: 79  VNDSSIGVVANQIEDKDEEPEEELGAMKEMMYKIAVMQPVDVDPTTIRKPKRRNVRISDD 138

Query: 138 PQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQ 197
           PQS+AARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ  +  Q
Sbjct: 139 PQSVAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQQPNN-Q 193

Query: 198 QPSTDGGAAAG 200
            P+ D GA  G
Sbjct: 199 NPTPDPGAVTG 193

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BLAST of CmoCh03G010750 vs. TrEMBL
Match: M1Q7Z8_PHAVU (Indehiscent-like protein OS=Phaseolus vulgaris PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 6.3e-47
Identity = 116/179 (64.80%), Postives = 130/179 (72.63%), Query Frame = 1


Query: 26  RHHHVHVHDPDPDPDPDPDPDSIWSSLLPFH----LPDPHQQFPSSSTHLLISYATPSS- 85
           + HH H HD       DP    IW +  P +    L   HQ  PS+++ ++   ++ SS 
Sbjct: 30  QQHHHHDHDHIILQVQDPLASGIWPNNYPHNHNPNLLQMHQTPPSTTSSIVPPPSSSSSG 89

Query: 86  ---------RVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQS 145
                     ++ DEEPEEELGAMKEMMYKIAAMQPVDIDP+TIRKPKRRNVRISDDPQS
Sbjct: 90  FLGDILGVHSMEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQS 149

Query: 146 IAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQQP 191
           +AAR RRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS   P QP
Sbjct: 150 VAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSISHPSQP 208

[Close]

BLAST of CmoCh03G010750 vs. TrEMBL
Match: V7CNP8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G271000g PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 8.3e-47
Identity = 116/179 (64.80%), Postives = 130/179 (72.63%), Query Frame = 1


Query: 26  RHHHVHVHDPDPDPDPDPDPDSIWSSLLPFH----LPDPHQQFPSSSTHLLISYATPSS- 85
           + HH H HD       DP    IW +  P +    L   HQ  PS+++ ++   ++ SS 
Sbjct: 29  QQHHHHDHDHIILQVQDPLASGIWPNNYPHNHNPNLLQMHQTPPSTTSSIVPPPSSSSSG 88

Query: 86  ---------RVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQS 145
                     ++ DEEPEEELGAMKEMMYKIAAMQPVDIDP+TIRKPKRRNVRISDDPQS
Sbjct: 89  FLGDILGVHSMEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQS 148

Query: 146 IAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQQP 191
           +AAR RRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS   P QP
Sbjct: 149 VAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPHPSQP 207

[Close]

BLAST of CmoCh03G010750 vs. TrEMBL
Match: F6I0G0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01040 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.1e-46
Identity = 117/181 (64.64%), Postives = 129/181 (71.27%), Query Frame = 1


Query: 53  LPFHLPDPHQQFPSSSTHLLISYATPSSRV--------------DNDEEPEEELGAMKEM 112
           LPF    P+   P   TH + + A+ SS++              + DEEPEEELGAMKEM
Sbjct: 35  LPFDAVWPNFPLP---THNITAAASSSSQISASVLLGDQMGNLLEEDEEPEEELGAMKEM 94

Query: 113 MYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKM 172
           MYKIAAMQPVDIDP+TIRKPKRRNVRISDDPQS+AAR RRERISEKIRILQRLVPGGTKM
Sbjct: 95  MYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKM 154

Query: 173 DTASMLDEAIRYVKFLKRQIRLLQSSDQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSM 220
           DTASMLDEAIRYVKFLKRQIR LQS+  P         +   W +T  K  GS SSS SM
Sbjct: 155 DTASMLDEAIRYVKFLKRQIRQLQSNHHPLPTDVTACLSTPDWAVTSTKLLGSTSSS-SM 211

[Close]

BLAST of CmoCh03G010750 vs. TAIR10
Match: AT5G09750.1 (AT5G09750.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-42
Identity = 102/159 (64.15%), Postives = 115/159 (72.33%), Query Frame = 1


Query: 27  HHHVHVHDPDPDPDPDPDPDSIWSSLLPFHLPDPHQQFPSSSTHLLISYATPSSRVDNDE 86
           HHH H +DP            I++     H P      P SS+    +  +     D DE
Sbjct: 32  HHHQHNNDPIGMAMDQYTQLHIFNPFSSSHFP------PLSSSLTTTTLLSGDQEDDEDE 91

Query: 87  E-PEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKI 146
           E P EELGAMKEMMYKIAAMQ VDIDP+T++KPKRRNVRISDDPQS+AAR RRERISE+I
Sbjct: 92  EEPLEELGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERI 151

Query: 147 RILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS 185
           RILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL ++
Sbjct: 152 RILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNN 184

[Close]

BLAST of CmoCh03G010750 vs. TAIR10
Match: AT4G00120.1 (AT4G00120.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 159.1 bits (401), Expect = 3.3e-39
Identity = 84/135 (62.22%), Postives = 100/135 (74.07%), Query Frame = 1


Query: 57  LPDPHQQFPSSSTHLLISYATPSS-RVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTI 116
           L   H  F +   HL++     +   +D DEE +E++ AMKEM Y IA MQPVDIDP+T+
Sbjct: 49  LTQEHAAFLNDPHHLMLDPPPETLIHLDEDEEYDEDMDAMKEMQYMIAVMQPVDIDPATV 108

Query: 117 RKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLK 176
            KP RRNVRISDDPQ++ AR RRERISEKIRIL+R+VPGG KMDTASMLDEAIRY KFLK
Sbjct: 109 PKPNRRNVRISDDPQTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLK 168

Query: 177 RQIRLLQSSDQPQQP 191
           RQ+R+LQ   Q   P
Sbjct: 169 RQVRILQPHSQIGAP 183

[Close]

BLAST of CmoCh03G010750 vs. TAIR10
Match: AT5G67060.1 (AT5G67060.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-34
Identity = 74/117 (63.25%), Postives = 89/117 (76.07%), Query Frame = 1


Query: 84  NDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISE 143
           N+      + AM+EM+++IA MQP+ IDP  ++ PKRRNVRIS DPQS+AAR RRERISE
Sbjct: 87  NNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISE 146

Query: 144 KIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQQPSTDGGAAAGG 201
           +IRILQRLVPGGTKMDTASMLDEAI YVKFLK+Q++ L+     Q   T GG   GG
Sbjct: 147 RIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE----QAVVTGGGGGGGG 199

[Close]

BLAST of CmoCh03G010750 vs. TAIR10
Match: AT3G50330.1 (AT3G50330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-33
Identity = 87/177 (49.15%), Postives = 112/177 (63.28%), Query Frame = 1


Query: 40  DPDPDPDSIW----SSLLPFHLPDPHQQFPSSSTH------LLISYA-TPSSRVDNDE-- 99
           +P+P+P +I     S+  PF     H   P   T       L   YA +PSS +      
Sbjct: 26  NPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHHQPGLNFRYAPSPSSSLPEKRGG 85

Query: 100 -EPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKI 159
                 + AM+EM+++IA MQP+ IDP +++ PKR+NVRIS DPQS+AAR RRERISE+I
Sbjct: 86  CSDNANMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRRERISERI 145

Query: 160 RILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS---DQPQQPSTDGGAAAG 200
           RILQRLVPGGTKMDTASMLDEAI YVKFLK+Q++ L+     +     +  GGA AG
Sbjct: 146 RILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEHAVVNGGGMTAVAGGALAG 202

[Close]

BLAST of CmoCh03G010750 vs. TAIR10
Match: AT3G21330.1 (AT3G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-29
Identity = 70/135 (51.85%), Postives = 93/135 (68.89%), Query Frame = 1


Query: 73  ISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSI 132
           IS+   +   DN E   E +  MKEM+Y+ AA +PV+     + KPKR+NV+IS DPQ++
Sbjct: 223 ISFQHSTCLSDNVEPDAEAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTV 282

Query: 133 AARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS-SDQPQQPS 192
           AAR RRERISEKIR+LQ LVPGGTKMDTASMLDEA  Y+KFL+ Q++ L++   +  Q +
Sbjct: 283 AARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQTN 342

Query: 193 TDGGAAAGGWPLTFH 207
               +A   +PL FH
Sbjct: 343 LSFSSAPTSFPL-FH 356

[Close]

BLAST of CmoCh03G010750 vs. NCBI nr
Match: gi|778717786|ref|XP_004148648.2| (PREDICTED: transcription factor HEC3-like [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 1.5e-86
Identity = 182/236 (77.12%), Postives = 192/236 (81.36%), Query Frame = 1


Query: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDPDPDSIWSSLLPFHLPDP 60
           M+PHHLSNP PHL  SAM+DHHILH HHHVH            D DSIW S LPF L D 
Sbjct: 1   MDPHHLSNPPPHLDRSAMDDHHILHHHHHVH------------DLDSIWPSFLPFQLSDH 60

Query: 61  H-QQFPSSSTHLLISYATPSSRV-DNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKP 120
           H QQ P+SSTH +I Y+TPSS   D++EEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKP
Sbjct: 61  HDQQLPTSSTHFVIGYSTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKP 120

Query: 121 KRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQI 180
           KRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQI
Sbjct: 121 KRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQI 180

Query: 181 RLLQSSDQPQQPSTDGGA----AAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 231
           RLLQSS  PQQPST GGA      GGW   F+KA+GS SSSTSME TPA ITP+GW
Sbjct: 181 RLLQSSQPPQQPSTSGGATTAGGGGGWHFPFNKANGSTSSSTSMENTPA-ITPTGW 223

[Close]

BLAST of CmoCh03G010750 vs. NCBI nr
Match: gi|659080904|ref|XP_008441041.1| (PREDICTED: transcription factor HEC3-like [Cucumis melo])

HSP 1 Score: 316.6 bits (810), Expect = 3.5e-83
Identity = 180/236 (76.27%), Postives = 189/236 (80.08%), Query Frame = 1


Query: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDPDPDSIWSSLLPFHLPDP 60
           M+PHHLSNP PHL  SAM+DHHILH   HVH            D DSIW S LPF L D 
Sbjct: 1   MDPHHLSNPPPHLDRSAMDDHHILH---HVH------------DLDSIWPSFLPFQLSDH 60

Query: 61  H-QQFPSSSTHLLISYATPSSRV-DNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKP 120
           H QQ P+SSTH LI Y+TPSS   D++EEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKP
Sbjct: 61  HDQQLPTSSTHFLIGYSTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKP 120

Query: 121 KRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQI 180
           KRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQI
Sbjct: 121 KRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQI 180

Query: 181 RLLQSSDQPQQPSTDGGAA----AGGWPLTFHKADGSASSSTSMETTPAIITPSGW 231
           RLLQSS  PQQPST GGAA     GGW    +KA+GS SSSTSME TP  ITP+GW
Sbjct: 181 RLLQSSQPPQQPSTSGGAATAAGGGGWHFPLNKANGSTSSSTSMENTPT-ITPTGW 220

[Close]

BLAST of CmoCh03G010750 vs. NCBI nr
Match: gi|950932666|ref|XP_014510374.1| (PREDICTED: transcription factor HEC3-like [Vigna radiata var. radiata])

HSP 1 Score: 196.8 bits (499), Expect = 4.1e-47
Identity = 118/177 (66.67%), Postives = 126/177 (71.19%), Query Frame = 1


Query: 26  RHHHVHVHDPDPDPDPDPDPDSIWSSLLPF-HLPDPHQQFPSSSTHLLISYATPSSR--- 85
           +H H H HD       DP    IWS+  P  H P+  Q   +  T      A PSS    
Sbjct: 30  QHQHQHHHDHIILQVQDPLASGIWSNNYPHSHNPNLLQMHQTPPTTTSSVVAPPSSSGFL 89

Query: 86  --------VDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIA 145
                   ++ DEEPEEELGAMKEMMYKIAAMQPVDIDP+TIRKPKRRNVRISDDPQS+A
Sbjct: 90  GDILGVHSMEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVA 149

Query: 146 ARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQQP 191
           AR RRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS   P QP
Sbjct: 150 ARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPHPSQP 206

[Close]

BLAST of CmoCh03G010750 vs. NCBI nr
Match: gi|629096295|gb|KCW62290.1| (hypothetical protein EUGRSUZ_H04946, partial [Eucalyptus grandis])

HSP 1 Score: 196.4 bits (498), Expect = 5.3e-47
Identity = 121/191 (63.35%), Postives = 132/191 (69.11%), Query Frame = 1


Query: 18  MEDH--HILHRHHHVHVHDPDPDPDPDPDPDSIWSSLLPFHLPDPHQQFPSSSTHLLISY 77
           MED   H   +HHH             P   S+W S+   HLP  HQ  P++S      +
Sbjct: 19  MEDQTLHSNDQHHH------------QPPFTSLWPSI---HLPLMHQTTPTTSQIPSSHF 78

Query: 78  ATPSSR-------VDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDD 137
              SS         D DEEPEEELGAMKEMMYKIA MQPVD+DP+TIRKPKRRNVRISDD
Sbjct: 79  VNDSSIGVVANQIEDKDEEPEEELGAMKEMMYKIAVMQPVDVDPTTIRKPKRRNVRISDD 138

Query: 138 PQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQ 197
           PQS+AARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ  +  Q
Sbjct: 139 PQSVAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQQPNN-Q 193

Query: 198 QPSTDGGAAAG 200
            P+ D GA  G
Sbjct: 199 NPTPDPGAVTG 193

[Close]

BLAST of CmoCh03G010750 vs. NCBI nr
Match: gi|702457810|ref|XP_010027364.1| (PREDICTED: transcription factor HEC3 [Eucalyptus grandis])

HSP 1 Score: 196.4 bits (498), Expect = 5.3e-47
Identity = 121/191 (63.35%), Postives = 132/191 (69.11%), Query Frame = 1


Query: 18  MEDH--HILHRHHHVHVHDPDPDPDPDPDPDSIWSSLLPFHLPDPHQQFPSSSTHLLISY 77
           MED   H   +HHH             P   S+W S+   HLP  HQ  P++S      +
Sbjct: 19  MEDQTLHSNDQHHH------------QPPFTSLWPSI---HLPLMHQTTPTTSQIPSSHF 78

Query: 78  ATPSSR-------VDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDD 137
              SS         D DEEPEEELGAMKEMMYKIA MQPVD+DP+TIRKPKRRNVRISDD
Sbjct: 79  VNDSSIGVVANQIEDKDEEPEEELGAMKEMMYKIAVMQPVDVDPTTIRKPKRRNVRISDD 138

Query: 138 PQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQ 197
           PQS+AARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ  +  Q
Sbjct: 139 PQSVAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQQPNN-Q 193

Query: 198 QPSTDGGAAAG 200
            P+ D GA  G
Sbjct: 199 NPTPDPGAVTG 193

The following BLAST results are available for this feature:

BLAST of CmoCh03G010750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HEC3_ARATH	2.0e-41	64.15	Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1	[more]
IND_ARATH	5.9e-38	62.22	Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3	[more]
HEC1_ARATH	1.3e-32	63.25	Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1	[more]
HEC2_ARATH	4.8e-32	49.15	Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1	[more]
BH087_ARATH	5.5e-28	51.85	Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1	[more]

BLAST of CmoCh03G010750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHS6_CUCSA	1.1e-86	77.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483450 PE=4 SV=1	[more]
A0A059B9E7_EUCGR	3.7e-47	63.35	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04946 PE=4 ...	[more]
M1Q7Z8_PHAVU	6.3e-47	64.80	Indehiscent-like protein OS=Phaseolus vulgaris PE=4 SV=1	[more]
V7CNP8_PHAVU	8.3e-47	64.80	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G271000g PE=4 SV=1	[more]
F6I0G0_VITVI	1.1e-46	64.64	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01040 PE=4 SV=...	[more]

BLAST of CmoCh03G010750 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09750.1	1.1e-42	64.15	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G00120.1	3.3e-39	62.22	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G67060.1	7.2e-34	63.25	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G50330.1	2.7e-33	49.15	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	3.1e-29	51.85	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of CmoCh03G010750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778717786\|ref\|XP_004148648.2\|	1.5e-86	77.12	PREDICTED: transcription factor HEC3-like [Cucumis sativus]	[more]
gi\|659080904\|ref\|XP_008441041.1\|	3.5e-83	76.27	PREDICTED: transcription factor HEC3-like [Cucumis melo]	[more]
gi\|950932666\|ref\|XP_014510374.1\|	4.1e-47	66.67	PREDICTED: transcription factor HEC3-like [Vigna radiata var. radiata]	[more]
gi\|629096295\|gb\|KCW62290.1\|	5.3e-47	63.35	hypothetical protein EUGRSUZ_H04946, partial [Eucalyptus grandis]	[more]
gi\|702457810\|ref\|XP_010027364.1\|	5.3e-47	63.35	PREDICTED: transcription factor HEC3 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G010750.1	CmoCh03G010750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 133..184 score: 8.0
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 133..174 score: 5.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 131..180 score: 6.1
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 125..174 score: 14
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 130..186 score: 4.84
None	No IPR available	PANTHER	PTHR12565	STEROL REGULATORY ELEMENT-BINDING PROTEIN	coord: 83..187 score: 1.8
None	No IPR available	PANTHER	PTHR12565:SF125	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 83..187 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G010750	Cucsa.101020	Cucumber (Gy14) v1	cgycmoB0227
CmoCh03G010750	CmaCh02G005770	Cucurbita maxima (Rimu)	cmacmoB621
CmoCh03G010750	CmaCh03G010890	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G010750	CmaCh07G007960	Cucurbita maxima (Rimu)	cmacmoB858
CmoCh03G010750	Cla008442	Watermelon (97103) v1	cmowmB620
CmoCh03G010750	Csa6G483450	Cucumber (Chinese Long) v2	cmocuB670
CmoCh03G010750	MELO3C008047	Melon (DHL92) v3.5.1	cmomeB598
CmoCh03G010750	ClCG01G015500	Watermelon (Charleston Gray)	cmowcgB575
CmoCh03G010750	CSPI06G26550	Wild cucumber (PI 183967)	cmocpiB681
CmoCh03G010750	Lsi01G011440	Bottle gourd (USVL1VR-Ls)	cmolsiB582
CmoCh03G010750	Cp4.1LG10g03410	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G010750	Cp4.1LG19g11930	Cucurbita pepo (Zucchini)	cmocpeB624
CmoCh03G010750	Cp4.1LG05g11010	Cucurbita pepo (Zucchini)	cmocpeB636
CmoCh03G010750	MELO3C008047.2	Melon (DHL92) v3.6.1	cmomedB688
CmoCh03G010750	CsaV3_6G041730	Cucumber (Chinese Long) v3	cmocucB0793
CmoCh03G010750	Cla97C01G014450	Watermelon (97103) v2	cmowmbB642
CmoCh03G010750	Bhi03G001053	Wax gourd	cmowgoB0794
CmoCh03G010750	CsGy6G026000	Cucumber (Gy14) v2	cgybcmoB811
CmoCh03G010750	Carg11647	Silver-seed gourd	carcmoB1424
CmoCh03G010750	Carg05303	Silver-seed gourd	carcmoB1095
CmoCh03G010750	Carg10541	Silver-seed gourd	carcmoB0336

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh03G010750	CmoCh02G005850	Cucurbita moschata (Rifu)	cmocmoB431
CmoCh03G010750	CmoCh07G008190	Cucurbita moschata (Rifu)	cmocmoB455

The following block(s) are covering this gene:

None