Cp4.1LG05g04880 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g04880
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	BnaA01g25510D protein
Location	Cp4.1LG05 : 2917061 .. 2917408 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCTTCAGGAGCGAAAATGGCGACAAGACCCAGAAGAAATATACGCACCTCCAAGCTGAATAAGAAAATCAAGAAGACAACCACGAAGAAGCCACAGCAGCCACAGAACCAGATTCCTCCGCCACAGAACGACGTCGTTCAATTCCCTGACGACGACGGCGGCGGCTACAGCACGCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTGACATGTCCACCGGGGCCGAAGAAGCAAAGACCCATCTCCGATTGTTCCTTCCGGCGATCGCCAATTGCCTTTTTTGCCCCTCCGGAATTAGAGCTCTTCTTCTTCATCGCCCGACCGGACATTTCAGTTTGA

mRNA sequence

ATGGCACCTTCAGGAGCGAAAATGGCGACAAGACCCAGAAGAAATATACGCACCTCCAAGCTGAATAAGAAAATCAAGAAGACAACCACGAAGAAGCCACAGCAGCCACAGAACCAGATTCCTCCGCCACAGAACGACGTCGTTCAATTCCCTGACGACGACGGCGGCGGCTACAGCACGCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTGACATGTCCACCGGGGCCGAAGAAGCAAAGACCCATCTCCGATTGTTCCTTCCGGCGATCGCCAATTGCCTTTTTTGCCCCTCCGGAATTAGAGCTCTTCTTCTTCATCGCCCGACCGGACATTTCAGTTTGA

Coding sequence (CDS)

ATGGCACCTTCAGGAGCGAAAATGGCGACAAGACCCAGAAGAAATATACGCACCTCCAAGCTGAATAAGAAAATCAAGAAGACAACCACGAAGAAGCCACAGCAGCCACAGAACCAGATTCCTCCGCCACAGAACGACGTCGTTCAATTCCCTGACGACGACGGCGGCGGCTACAGCACGCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTGACATGTCCACCGGGGCCGAAGAAGCAAAGACCCATCTCCGATTGTTCCTTCCGGCGATCGCCAATTGCCTTTTTTGCCCCTCCGGAATTAGAGCTCTTCTTCTTCATCGCCCGACCGGACATTTCAGTTTGA

Protein sequence

MAPSGAKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDGGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV

Homology

[Close]

BLAST of Cp4.1LG05g04880 vs. TrEMBL
Match: A0A0A0L0Q1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291940 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-31
Identity = 83/121 (68.60%), Postives = 93/121 (76.86%), Query Frame = 1


Query: 1   MAPSGAKMATRP-RRNIRTSKLNKKIKKTTTKK--PQQPQNQIPPPQNDVVQFPDD-DGG 60
           MAPSGA+MATR  RR +   KL KKIKKTT KK  PQ+ +  +P  QND+V+F D+   G
Sbjct: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60

Query: 61  GYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIAR--PDIS 116
           G STPKAER RIPEILTCPP PKK R +SDCS RRSPIAFFAPPELELFFF+A   PDIS
Sbjct: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120

[Close]

BLAST of Cp4.1LG05g04880 vs. TrEMBL
Match: B9RID1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1578060 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.0e-18
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 59  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 116
           STPKA++FRIPEI+TCPP PKKQR IS+CS +R PIAFFAPP++ELFFF AR DISV
Sbjct: 84  STPKAQKFRIPEIVTCPPAPKKQRMISNCSLQRRPIAFFAPPDIELFFFYARHDISV 140

[Close]

BLAST of Cp4.1LG05g04880 vs. TrEMBL
Match: M5WK19_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016642mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.6e-17
Identity = 64/130 (49.23%), Postives = 73/130 (56.15%), Query Frame = 1


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKP--QQPQNQIPP---PQN----------------D 67
           MA   R   +T    K  K    KKP  Q+ + QI P   P N                D
Sbjct: 1   MAPSARTRAKTKTTTKARKTNFKKKPVHQKGKQQITPSNSPSNSSSVVCDDPPKIEGCAD 60

Query: 68  VVQFPDD-DGGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELF 116
            V+ PDD      STPK +RFRIPEI+TCPP PKKQR IS+C FRRSPIAFFAPP+LELF
Sbjct: 61  DVEGPDDVSTSACSTPKGQRFRIPEIVTCPPAPKKQRVISNCLFRRSPIAFFAPPDLELF 120

[Close]

BLAST of Cp4.1LG05g04880 vs. TrEMBL
Match: A0A067JE45_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25928 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.6e-17
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 59  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 116
           STPKA++FRIPEI+TCPP PKKQR IS+CS +R PIAFFAPP+LELFFF A  DISV
Sbjct: 80  STPKAQKFRIPEIVTCPPAPKKQRVISNCSLQRRPIAFFAPPDLELFFFFALRDISV 136

[Close]

BLAST of Cp4.1LG05g04880 vs. TrEMBL
Match: A5CBS4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031232 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.8e-16
Identity = 54/110 (49.09%), Postives = 68/110 (61.82%), Query Frame = 1


Query: 26  KKTTTKKPQQPQNQIPP-----PQNDVVQFPDDD---------------GGGYSTPKAER 85
           ++  T++P++ Q   PP     PQ  +    DD+                 G+STPKA+R
Sbjct: 3   QRRRTRRPRRTQYSRPPVQSSDPQPSMDHAADDNPSNTPAVELESVDISNNGFSTPKAQR 62

Query: 86  FRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 116
           FRIPEILTCPP PKK+RP  + S RRSPIAFFAPP+LELFFF A  D+SV
Sbjct: 63  FRIPEILTCPPAPKKRRP--NYSLRRSPIAFFAPPDLELFFFFALGDVSV 110

[Close]

BLAST of Cp4.1LG05g04880 vs. TAIR10
Match: AT3G20898.1 (AT3G20898.1 unknown protein)

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-13
Identity = 45/106 (42.45%), Postives = 59/106 (55.66%), Query Frame = 1


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDG-------GGYST 67
           MA++  R  + ++  KK+ ++  KK     N I    N +   P           GG  T
Sbjct: 1   MASKKAR--KPNRAEKKLTRSCFKKQVPQHNNINT--NTIYSVPSPSPAAVLTSPGGCCT 60

Query: 68  PKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFF 107
           PKA++ RIPE+LTCPP PKKQR   +C  RR  I FFAPPE+ELFF
Sbjct: 61  PKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of Cp4.1LG05g04880 vs. TAIR10
Match: AT1G51355.1 (AT1G51355.1 unknown protein)

HSP 1 Score: 67.4 bits (163), Expect = 6.6e-12
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 1


Query: 19  SKLNKKIKKTTTKKPQQP--QNQIPP----------------PQNDVVQFPDDDGGGYST 78
           SK  K +++TTT++ ++   +N  PP                P +     P     G  T
Sbjct: 3   SKGKKPLRRTTTRRRKRSHFKNPSPPCSINSDVTSTSSTSTSPTSTATPSPVSAESGCCT 62

Query: 79  PKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIA 110
           P  E+ RIPE+LTCPP PKKQ+   +C+ RR  IAFFAPP++ELFF  A
Sbjct: 63  P--EKSRIPEMLTCPPAPKKQKVAQNCALRRRQIAFFAPPDVELFFVFA 109

[Close]

BLAST of Cp4.1LG05g04880 vs. NCBI nr
Match: gi|659097599|ref|XP_008449712.1| (PREDICTED: uncharacterized protein LOC103491508 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-32
Identity = 82/120 (68.33%), Postives = 93/120 (77.50%), Query Frame = 1


Query: 1   MAPSGAKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPP--QNDVVQFPDD-DGGG 60
           MAPSGA++ATR RR++   KL KKIKKTT KK    + +IP    QND+V+F D+   GG
Sbjct: 1   MAPSGARVATRTRRSLPNLKLTKKIKKTTNKKQPLQKTEIPAAVTQNDIVEFGDECSDGG 60

Query: 61  YSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIAR--PDISV 116
            STPKAER RIPEILTCPP PKK R +SDCSFRRSPIAFFAPPELELFFF+A   PDISV
Sbjct: 61  CSTPKAERHRIPEILTCPPAPKKPRAVSDCSFRRSPIAFFAPPELELFFFVALPVPDISV 120

[Close]

BLAST of Cp4.1LG05g04880 vs. NCBI nr
Match: gi|778693209|ref|XP_011653594.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 2.0e-31
Identity = 83/121 (68.60%), Postives = 93/121 (76.86%), Query Frame = 1


Query: 1   MAPSGAKMATRP-RRNIRTSKLNKKIKKTTTKK--PQQPQNQIPPPQNDVVQFPDD-DGG 60
           MAPSGA+MATR  RR +   KL KKIKKTT KK  PQ+ +  +P  QND+V+F D+   G
Sbjct: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60

Query: 61  GYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIAR--PDIS 116
           G STPKAER RIPEILTCPP PKK R +SDCS RRSPIAFFAPPELELFFF+A   PDIS
Sbjct: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120

[Close]

BLAST of Cp4.1LG05g04880 vs. NCBI nr
Match: gi|1000978458|ref|XP_015571185.1| (PREDICTED: uncharacterized protein LOC8274451 [Ricinus communis])

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 59  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 116
           STPKA++FRIPEI+TCPP PKKQR IS+CS +R PIAFFAPP++ELFFF AR DISV
Sbjct: 84  STPKAQKFRIPEIVTCPPAPKKQRMISNCSLQRRPIAFFAPPDIELFFFYARHDISV 140

[Close]

BLAST of Cp4.1LG05g04880 vs. NCBI nr
Match: gi|802763726|ref|XP_012090012.1| (PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas])

HSP 1 Score: 96.3 bits (238), Expect = 3.7e-17
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 59  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 116
           STPKA++FRIPEI+TCPP PKKQR IS+CS +R PIAFFAPP+LELFFF A  DISV
Sbjct: 80  STPKAQKFRIPEIVTCPPAPKKQRVISNCSLQRRPIAFFAPPDLELFFFFALRDISV 136

[Close]

BLAST of Cp4.1LG05g04880 vs. NCBI nr
Match: gi|595881495|ref|XP_007212427.1| (hypothetical protein PRUPE_ppa016642mg [Prunus persica])

HSP 1 Score: 96.3 bits (238), Expect = 3.7e-17
Identity = 64/130 (49.23%), Postives = 73/130 (56.15%), Query Frame = 1


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKP--QQPQNQIPP---PQN----------------D 67
           MA   R   +T    K  K    KKP  Q+ + QI P   P N                D
Sbjct: 1   MAPSARTRAKTKTTTKARKTNFKKKPVHQKGKQQITPSNSPSNSSSVVCDDPPKIEGCAD 60

Query: 68  VVQFPDD-DGGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELF 116
            V+ PDD      STPK +RFRIPEI+TCPP PKKQR IS+C FRRSPIAFFAPP+LELF
Sbjct: 61  DVEGPDDVSTSACSTPKGQRFRIPEIVTCPPAPKKQRVISNCLFRRSPIAFFAPPDLELF 120

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g04880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g04880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Q1_CUCSA	1.4e-31	68.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291940 PE=4 SV=1	[more]
B9RID1_RICCO	9.0e-18	77.19	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1578060 PE=4 SV=1	[more]
M5WK19_PRUPE	2.6e-17	49.23	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016642mg PE=4 SV=1	[more]
A0A067JE45_JATCU	2.6e-17	77.19	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25928 PE=4 SV=1	[more]
A5CBS4_VITVI	3.8e-16	49.09	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031232 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g04880 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20898.1	3.5e-13	42.45	unknown protein	[more]
AT1G51355.1	6.6e-12	39.45	unknown protein	[more]

BLAST of Cp4.1LG05g04880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097599\|ref\|XP_008449712.1\|	1.9e-32	68.33	PREDICTED: uncharacterized protein LOC103491508 [Cucumis melo]	[more]
gi\|778693209\|ref\|XP_011653594.1\|	2.0e-31	68.60	PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis sativus]	[more]
gi\|1000978458\|ref\|XP_015571185.1\|	1.3e-17	77.19	PREDICTED: uncharacterized protein LOC8274451 [Ricinus communis]	[more]
gi\|802763726\|ref\|XP_012090012.1\|	3.7e-17	77.19	PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]	[more]
gi\|595881495\|ref\|XP_007212427.1\|	3.7e-17	49.23	hypothetical protein PRUPE_ppa016642mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g04880.1	Cp4.1LG05g04880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33142	FAMILY NOT NAMED	coord: 59..109 score: 1.3
None	No IPR available	PANTHER	PTHR33142:SF4	SUBFAMILY NOT NAMED	coord: 59..109 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG05g04880	Cucsa.065600	Cucumber (Gy14) v1	cgycpeB0102
Cp4.1LG05g04880	CmaCh11G008470	Cucurbita maxima (Rimu)	cmacpeB158
Cp4.1LG05g04880	CmaCh20G000880	Cucurbita maxima (Rimu)	cmacpeB586
Cp4.1LG05g04880	CmoCh02G012920	Cucurbita moschata (Rifu)	cmocpeB595
Cp4.1LG05g04880	CmoCh10G009740	Cucurbita moschata (Rifu)	cmocpeB074
Cp4.1LG05g04880	CmoCh11G008580	Cucurbita moschata (Rifu)	cmocpeB134
Cp4.1LG05g04880	Cla008550	Watermelon (97103) v1	cpewmB723
Cp4.1LG05g04880	Csa1G613590	Cucumber (Chinese Long) v2	cpecuB703
Cp4.1LG05g04880	Csa4G291940	Cucumber (Chinese Long) v2	cpecuB729
Cp4.1LG05g04880	MELO3C014591	Melon (DHL92) v3.5.1	cpemeB696
Cp4.1LG05g04880	ClCG02G023190	Watermelon (Charleston Gray)	cpewcgB644
Cp4.1LG05g04880	ClCG03G013230	Watermelon (Charleston Gray)	cpewcgB670
Cp4.1LG05g04880	CSPI04G13950	Wild cucumber (PI 183967)	cpecpiB730
Cp4.1LG05g04880	Lsi10G010660	Bottle gourd (USVL1VR-Ls)	cpelsiB598
Cp4.1LG05g04880	Lsi06G005260	Bottle gourd (USVL1VR-Ls)	cpelsiB629
Cp4.1LG05g04880	MELO3C014591.2	Melon (DHL92) v3.6.1	cpemedB829
Cp4.1LG05g04880	CsaV3_4G024290	Cucumber (Chinese Long) v3	cpecucB0908
Cp4.1LG05g04880	Bhi10G000230	Wax gourd	cpewgoB0944
Cp4.1LG05g04880	Carg06901	Silver-seed gourd	carcpeB0741
Cp4.1LG05g04880	Carg02707	Silver-seed gourd	carcpeB1283
Cp4.1LG05g04880	Carg16940	Silver-seed gourd	carcpeB0658
Cp4.1LG05g04880	Carg17970	Silver-seed gourd	carcpeB0249

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG05g04880	Cp4.1LG16g08890	Cucurbita pepo (Zucchini)	cpecpeB310
Cp4.1LG05g04880	Cp4.1LG18g01640	Cucurbita pepo (Zucchini)	cpecpeB369
Cp4.1LG05g04880	Cp4.1LG04g12100	Cucurbita pepo (Zucchini)	cpecpeB493

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG05g04880	Melon (DHL92) v3.6.1	cpemedB813
Cp4.1LG05g04880	Silver-seed gourd	carcpeB0635
Cp4.1LG05g04880	Cucumber (Chinese Long) v3	cpecucB0877
Cp4.1LG05g04880	Cucumber (Chinese Long) v3	cpecucB0948
Cp4.1LG05g04880	Wax gourd	cpewgoB0970
Cp4.1LG05g04880	Cucurbita pepo (Zucchini)	cpecpeB190
Cp4.1LG05g04880	Cucurbita pepo (Zucchini)	cpecpeB341
Cp4.1LG05g04880	Cucumber (Gy14) v1	cgycpeB0386
Cp4.1LG05g04880	Cucurbita maxima (Rimu)	cmacpeB098
Cp4.1LG05g04880	Cucurbita maxima (Rimu)	cmacpeB646
Cp4.1LG05g04880	Cucurbita moschata (Rifu)	cmocpeB535
Cp4.1LG05g04880	Wild cucumber (PI 183967)	cpecpiB705
Cp4.1LG05g04880	Cucumber (Chinese Long) v2	cpecuB768
Cp4.1LG05g04880	Cucumber (Gy14) v2	cgybcpeB137
Cp4.1LG05g04880	Cucumber (Gy14) v2	cgybcpeB975