CSPI04G13950 (gene) Wild cucumber (PI 183967)

NameCSPI04G13950
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionBnaA05g20000D protein
LocationChr4 : 11841394 .. 11842025 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTACCTCGGGCAGCGGGCAGCCTACCCCTGCTTATAATCAGCTCAAGATGGGCAGGGAAATGCCAATCCCTCTTCTCTCTGTTTCTCTCTCTCTAGGGTTTTGTGGGTTTTTGAACTTCAATCCTTCTCTTTAATGGTTATCTTCCCAAATTCTTTGATACCCTTTTCTTTTTAGAACCAATCCTTTCTAAAGCTTAAATCTTTCGCGTAAACCCCTTTGTTTTTCTTCTTACTCGAAATTCCTCTGTTTTTCCTTCAAAAATGGCGCCTTCAGGAGCAAGAATGGCTACAAGAACTACAAGAAGAGCTTTACCCAACTTGAAGCTAACGAAGAAAATCAAGAAAACGACGAACAAGAAACAACCGCCGCAGAAGATAGAGATTCCAGTTCCCGTCACGCAAAACGACATCGTTGAATTTGGCGACGAGTGTTCCGACGGTGGTTGCAGTACTCCAAAAGCAGAGAGACATAGAATCCCAGAGATTTTGACGTGTCCACCGGCGCCGAAGAAACCAAGAGCTGTTTCCGATTGCTCATTACGACGATCACCCATTGCCTTTTTTGCCCCTCCAGAATTAGAACTCTTCTTCTTTGTTGCCTTGCCGGTGCCGGACATTTCAGTCTGAAGCTC

mRNA sequence

ATGGCGCCTTCAGGAGCAAGAATGGCTACAAGAACTACAAGAAGAGCTTTACCCAACTTGAAGCTAACGAAGAAAATCAAGAAAACGACGAACAAGAAACAACCGCCGCAGAAGATAGAGATTCCAGTTCCCGTCACGCAAAACGACATCGTTGAATTTGGCGACGAGTGTTCCGACGGTGGTTGCAGTACTCCAAAAGCAGAGAGACATAGAATCCCAGAGATTTTGACGTGTCCACCGGCGCCGAAGAAACCAAGAGCTGTTTCCGATTGCTCATTACGACGATCACCCATTGCCTTTTTTGCCCCTCCAGAATTAGAACTCTTCTTCTTTGTTGCCTTGCCGGTGCCGGACATTTCAGTCTGA

Coding sequence (CDS)

ATGGCGCCTTCAGGAGCAAGAATGGCTACAAGAACTACAAGAAGAGCTTTACCCAACTTGAAGCTAACGAAGAAAATCAAGAAAACGACGAACAAGAAACAACCGCCGCAGAAGATAGAGATTCCAGTTCCCGTCACGCAAAACGACATCGTTGAATTTGGCGACGAGTGTTCCGACGGTGGTTGCAGTACTCCAAAAGCAGAGAGACATAGAATCCCAGAGATTTTGACGTGTCCACCGGCGCCGAAGAAACCAAGAGCTGTTTCCGATTGCTCATTACGACGATCACCCATTGCCTTTTTTGCCCCTCCAGAATTAGAACTCTTCTTCTTTGTTGCCTTGCCGGTGCCGGACATTTCAGTCTGA
BLAST of CSPI04G13950 vs. TrEMBL
Match: A0A0A0L0Q1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291940 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.4e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1

Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60
           MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG
Sbjct: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60

Query: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120
           GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS
Sbjct: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120

Query: 121 V 122
           V
Sbjct: 121 V 121

BLAST of CSPI04G13950 vs. TrEMBL
Match: W9RHW5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015298 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-17
Identity = 60/132 (45.45%), Postives = 78/132 (59.09%), Query Frame = 1

Query: 1   MAPSG-ARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPV---------------- 60
           M PSG  R  TRT R+A    +L   +K+T+N ++     E+ V                
Sbjct: 1   MGPSGRTRTRTRTARKARRKSEL---MKRTSNNQESGHDHEVVVINSPTKSSSSNDDDHL 60

Query: 61  -PVTQNDIVEFGDECSDGGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFA 115
            P T+    E  D+    GCSTPK +R RIPEI TCPPAPKK R +S+CS++R+PIAFFA
Sbjct: 61  IPKTEGIEFEAVDDDDVVGCSTPKGQRFRIPEIRTCPPAPKKQRVISNCSIQRTPIAFFA 120

BLAST of CSPI04G13950 vs. TrEMBL
Match: C6T822_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G335700 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-17
Identity = 68/158 (43.04%), Postives = 86/158 (54.43%), Query Frame = 1

Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTN--KKQPPQ-----------KIEIPVPVT- 60
           MAPSG R  T +TR      + T++ ++TTN  KKQ  Q           + E+PVP   
Sbjct: 32  MAPSG-RTTTASTRTTSKTTRRTRQQRRTTNFKKKQQQQHNTKSNNNKKQQEEVPVPTVL 91

Query: 61  -----------------------QNDIVEFGDECSDGGCSTPKAERHRIPEILTCPPAPK 120
                                   +   E  D C+   CSTPK ++ RIPEI TCPPAPK
Sbjct: 92  PSSYCSSSSISSQDSSNSKEVDNMHGSAEVIDVCNSP-CSTPKGKKFRIPEISTCPPAPK 151

Query: 121 KPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDISV 122
           KPR +S+CSLRRSP++FFAPP+LE FFFVAL   D+SV
Sbjct: 152 KPRVLSNCSLRRSPLSFFAPPDLEHFFFVAL--RDVSV 185

BLAST of CSPI04G13950 vs. TrEMBL
Match: A0A0B2P2B0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_028474 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-17
Identity = 68/158 (43.04%), Postives = 86/158 (54.43%), Query Frame = 1

Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTN--KKQPPQ-----------KIEIPVPVT- 60
           MAPSG R  T +TR      + T++ ++TTN  KKQ  Q           + E+PVP   
Sbjct: 32  MAPSG-RTTTASTRTTSKTTRRTRQQRRTTNFKKKQQQQHNTKSNNNKKQQEEVPVPTVL 91

Query: 61  -----------------------QNDIVEFGDECSDGGCSTPKAERHRIPEILTCPPAPK 120
                                   +   E  D C+   CSTPK ++ RIPEI TCPPAPK
Sbjct: 92  PSSYCSSSSISSQDSSNSKEVDNMHGSAEVIDVCNSP-CSTPKGKKFRIPEISTCPPAPK 151

Query: 121 KPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDISV 122
           KPR +S+CSLRRSP++FFAPP+LE FFFVAL   D+SV
Sbjct: 152 KPRVLSNCSLRRSPLSFFAPPDLEHFFFVAL--RDVSV 185

BLAST of CSPI04G13950 vs. TrEMBL
Match: A0A068VHS0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00005167001 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 58/116 (50.00%), Postives = 78/116 (67.24%), Query Frame = 1

Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGD-ECSD 60
           M PS  R  TR+TR++       KK  + T+++ P +    P+ +   D ++FG  + S+
Sbjct: 1   MGPS-CRRRTRSTRKSRRATICKKKNHELTDQETPSKVSNSPLNL---DGIDFGMIDASN 60

Query: 61  GGCSTPKAERHRIPEILTCPPAPKKPRAVSDC-SLRRSPIAFFAPPELELFFFVAL 115
             C+TPKAE+ RIPEI TCPPAPKK R +  C SLRR+PIAFFAPP+LELFFFV+L
Sbjct: 61  SPCATPKAEKFRIPEITTCPPAPKKRRVLKRCSSLRRNPIAFFAPPDLELFFFVSL 112

BLAST of CSPI04G13950 vs. TAIR10
Match: AT3G20898.1 (AT3G20898.1 unknown protein)

HSP 1 Score: 81.3 bits (199), Expect = 4.7e-16
Identity = 53/109 (48.62%), Postives = 65/109 (59.63%), Query Frame = 1

Query: 8   MATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEI------PVPVTQNDIVEFGDECSDGG 67
           MA++  R+  PN +  KK+ ++  KKQ PQ   I       VP      V      S GG
Sbjct: 1   MASKKARK--PN-RAEKKLTRSCFKKQVPQHNNINTNTIYSVPSPSPAAVL----TSPGG 60

Query: 68  CSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFF 111
           C TPKA++ RIPE+LTCPPAPKK R   +C LRR  I FFAPPE+ELFF
Sbjct: 61  CCTPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

BLAST of CSPI04G13950 vs. TAIR10
Match: AT1G51355.1 (AT1G51355.1 unknown protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 48/123 (39.02%), Postives = 63/123 (51.22%), Query Frame = 1

Query: 1   MAPSGARMATRTTRRAL---------PNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIV 60
           MA  G +   RTT R           P   +   +  T++    P     P PV+     
Sbjct: 1   MASKGKKPLRRTTTRRRKRSHFKNPSPPCSINSDVTSTSSTSTSPTSTATPSPVS----- 60

Query: 61  EFGDECSDGGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFF 115
                 ++ GC TP  E+ RIPE+LTCPPAPKK +   +C+LRR  IAFFAPP++ELFF 
Sbjct: 61  ------AESGCCTP--EKSRIPEMLTCPPAPKKQKVAQNCALRRRQIAFFAPPDVELFFV 110

BLAST of CSPI04G13950 vs. TAIR10
Match: AT5G02220.1 (AT5G02220.1 unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 9.8e-06
Identity = 24/65 (36.92%), Postives = 37/65 (56.92%), Query Frame = 1

Query: 49  DIVEFGDECSDGGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSP--IAFFAPPEL 108
           ++VE   E ++ GC+TP++  +RIP    CPP P+K   V     +R P    +F PP+L
Sbjct: 2   EVVERKTEMAEEGCTTPRSTMYRIPVASVCPPPPRKKLMV---VRKRDPPRNGYFQPPDL 61

Query: 109 ELFFF 112
           E  F+
Sbjct: 62  ETLFY 63

BLAST of CSPI04G13950 vs. NCBI nr
Match: gi|778693209|ref|XP_011653594.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 3.4e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1

Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60
           MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG
Sbjct: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60

Query: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120
           GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS
Sbjct: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120

Query: 121 V 122
           V
Sbjct: 121 V 121

BLAST of CSPI04G13950 vs. NCBI nr
Match: gi|659097599|ref|XP_008449712.1| (PREDICTED: uncharacterized protein LOC103491508 [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 8.2e-55
Identity = 113/121 (93.39%), Postives = 115/121 (95.04%), Query Frame = 1

Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60
           MAPSGAR+ATRT RR+LPNLKLTKKIKKTTNKKQP QK EIP  VTQNDIVEFGDECSDG
Sbjct: 1   MAPSGARVATRT-RRSLPNLKLTKKIKKTTNKKQPLQKTEIPAAVTQNDIVEFGDECSDG 60

Query: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120
           GCSTPKAERHRIPEILTCPPAPKKPRAVSDCS RRSPIAFFAPPELELFFFVALPVPDIS
Sbjct: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSFRRSPIAFFAPPELELFFFVALPVPDIS 120

Query: 121 V 122
           V
Sbjct: 121 V 120

BLAST of CSPI04G13950 vs. NCBI nr
Match: gi|703121530|ref|XP_010102349.1| (hypothetical protein L484_015298 [Morus notabilis])

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-17
Identity = 60/132 (45.45%), Postives = 78/132 (59.09%), Query Frame = 1

Query: 1   MAPSG-ARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPV---------------- 60
           M PSG  R  TRT R+A    +L   +K+T+N ++     E+ V                
Sbjct: 1   MGPSGRTRTRTRTARKARRKSEL---MKRTSNNQESGHDHEVVVINSPTKSSSSNDDDHL 60

Query: 61  -PVTQNDIVEFGDECSDGGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFA 115
            P T+    E  D+    GCSTPK +R RIPEI TCPPAPKK R +S+CS++R+PIAFFA
Sbjct: 61  IPKTEGIEFEAVDDDDVVGCSTPKGQRFRIPEIRTCPPAPKKQRVISNCSIQRTPIAFFA 120

BLAST of CSPI04G13950 vs. NCBI nr
Match: gi|359806302|ref|NP_001240966.1| (uncharacterized protein LOC100785545 [Glycine max])

HSP 1 Score: 96.7 bits (239), Expect = 3.0e-17
Identity = 68/158 (43.04%), Postives = 86/158 (54.43%), Query Frame = 1

Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTN--KKQPPQ-----------KIEIPVPVT- 60
           MAPSG R  T +TR      + T++ ++TTN  KKQ  Q           + E+PVP   
Sbjct: 32  MAPSG-RTTTASTRTTSKTTRRTRQQRRTTNFKKKQQQQHNTKSNNNKKQQEEVPVPTVL 91

Query: 61  -----------------------QNDIVEFGDECSDGGCSTPKAERHRIPEILTCPPAPK 120
                                   +   E  D C+   CSTPK ++ RIPEI TCPPAPK
Sbjct: 92  PSSYCSSSSISSQDSSNSKEVDNMHGSAEVIDVCNSP-CSTPKGKKFRIPEISTCPPAPK 151

Query: 121 KPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDISV 122
           KPR +S+CSLRRSP++FFAPP+LE FFFVAL   D+SV
Sbjct: 152 KPRVLSNCSLRRSPLSFFAPPDLEHFFFVAL--RDVSV 185

BLAST of CSPI04G13950 vs. NCBI nr
Match: gi|743924196|ref|XP_011006216.1| (PREDICTED: uncharacterized protein LOC105112272 [Populus euphratica])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 62/130 (47.69%), Postives = 80/130 (61.54%), Query Frame = 1

Query: 1   MAPSGA-RMATRTTRRALPNLKLTK--KIKKTTNKKQPPQKIEIPVPVTQN-----DIVE 60
           MAP+G  R   +TTRR     ++ K   IK+ +  +  P         + N     D ++
Sbjct: 1   MAPNGRKRTGAKTTRRTQYKKRVMKPKSIKEASIIEDLPSNSSTTTTTSCNGCSKIDGLD 60

Query: 61  F-GDECSDGGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFF 120
           F G + S   CSTPKAER RIPEI TCPPAP+K R +S+CSL+R PIAFFAPP+LELFFF
Sbjct: 61  FEGVDISASACSTPKAERFRIPEIQTCPPAPRKERIISNCSLQRRPIAFFAPPDLELFFF 120

Query: 121 VALPVPDISV 122
            A  + D+SV
Sbjct: 121 YA--IHDVSV 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L0Q1_CUCSA2.4e-61100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291940 PE=4 SV=1[more]
W9RHW5_9ROSA1.6e-1745.45Uncharacterized protein OS=Morus notabilis GN=L484_015298 PE=4 SV=1[more]
C6T822_SOYBN2.1e-1743.04Uncharacterized protein OS=Glycine max GN=GLYMA_08G335700 PE=2 SV=1[more]
A0A0B2P2B0_GLYSO2.1e-1743.04Uncharacterized protein OS=Glycine soja GN=glysoja_028474 PE=4 SV=1[more]
A0A068VHS0_COFCA1.4e-1650.00Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00005167001 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G20898.14.7e-1648.62 unknown protein[more]
AT1G51355.11.5e-1439.02 unknown protein[more]
AT5G02220.19.8e-0636.92 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778693209|ref|XP_011653594.1|3.4e-61100.00PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis sativus][more]
gi|659097599|ref|XP_008449712.1|8.2e-5593.39PREDICTED: uncharacterized protein LOC103491508 [Cucumis melo][more]
gi|703121530|ref|XP_010102349.1|2.3e-1745.45hypothetical protein L484_015298 [Morus notabilis][more]
gi|359806302|ref|NP_001240966.1|3.0e-1743.04uncharacterized protein LOC100785545 [Glycine max][more]
gi|743924196|ref|XP_011006216.1|1.2e-1647.69PREDICTED: uncharacterized protein LOC105112272 [Populus euphratica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G13950.1CSPI04G13950.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33142FAMILY NOT NAMEDcoord: 46..114
score: 7.2
NoneNo IPR availablePANTHERPTHR33142:SF4SUBFAMILY NOT NAMEDcoord: 46..114
score: 7.2