Cp4.1LG05g03950 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g03950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHomeobox protein knotted-1, putative
LocationCp4.1LG05 : 1677903 .. 1678516 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCAAATGCAAGAGCCTGGGTTGGGAATGATGACTGCTGCTGCTGCTGCTGCCGCCGCCTCTACTGCTGCCTTAAGCGCCGACGTTTCCATCTCCGGCGACAACGCCCAACTCAAGGCTGAGATTGCTACTCATCCGCTTTACGAGCAGCTTTTAGCCGCACATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGACCAGCTTCCAATCATCGACGCTCAGTTGGCTCAATCGCACCATGTTTTGCGATCTTATGCCTCTCAGCAGCATCACCAACATGCCCATTCCTTATCGCCTCACGAGCGCCAAGAACTCGACAATTTCCTAGTCAGTTTTTTCACTTTTTGTTTAACTTAAATATTGGTTGAGTTTGGTTTCATTTTGTGATGCTTTTCTTTTTTCTTCAGGCGCAGTATATGATCGTTTTGTGCTCTTTTAAAGACCAGCTTCAGCAACATGTGAGGGTTCACGCAGTGGAAGCTGTTATGGCATGCCGTGAAATTGAAAATACTCTACAAGCTCTTACAGGTATCTCACGTCAATTCCTCCAAAACAAACCNAAACCTAAAGACTTAATTTGATAATTTTTCAAATATTTAAGAGGAAAGAATAT

mRNA sequence

TTTTCAAATGCAAGAGCCTGGGTTGGGAATGATGACTGCTGCTGCTGCTGCTGCCGCCGCCTCTACTGCTGCCTTAAGCGCCGACGTTTCCATCTCCGGCGACAACGCCCAACTCAAGGCTGAGATTGCTACTCATCCGCTTTACGAGCAGCTTTTAGCCGCACATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGACCAGCTTCCAATCATCGACGCTCAGTTGGCTCAATCGCACCATGTTTTGCGATCTTATGCCTCTCAGCAGCATCACCAACATGCCCATTCCTTATCGCCTCACGAGCGCCAAGAACTCGACAATTTCCTAGCGCAGTATATGATCGTTTTGTGCTCTTTTAAAGACCAGCTTCAGCAACATGTGAGGGTTCACGCAGTGGAAGCTGTTATGGCATGCCGTGAAATTGAAAATACTCTACAAGCTCTTACAGAATAT

Coding sequence (CDS)

ATGCAAGAGCCTGGGTTGGGAATGATGACTGCTGCTGCTGCTGCTGCCGCCGCCTCTACTGCTGCCTTAAGCGCCGACGTTTCCATCTCCGGCGACAACGCCCAACTCAAGGCTGAGATTGCTACTCATCCGCTTTACGAGCAGCTTTTAGCCGCACATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGACCAGCTTCCAATCATCGACGCTCAGTTGGCTCAATCGCACCATGTTTTGCGATCTTATGCCTCTCAGCAGCATCACCAACATGCCCATTCCTTATCGCCTCACGAGCGCCAAGAACTCGACAATTTCCTAGCGCAGTATATGATCGTTTTGTGCTCTTTTAAAGACCAGCTTCAGCAACATGTGAGGGTTCACGCAGTGGAAGCTGTTATGGCATGCCGTGAAATTGAAAATACTCTACAAGCTCTTACAGAATAT

Protein sequence

MQEPGLGMMTAAAAAAAASTAALSADVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQALTEY
Homology
[Close]
BLAST of Cp4.1LG05g03950 vs. Swiss-Prot
Match: HD1_BRANA (Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.3e-43
Identity = 99/147 (67.35%), Postives = 113/147 (76.87%), Query Frame = 1 

Query: 1   MQEPGLGMMTAAAAAAAASTAALSADVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVA 60
           MQE  LGM+ A         AA+ A+      N Q+K EIATHP+Y+QLLAAHVACLRVA
Sbjct: 1   MQEAALGMIGATVGGGGDGDAAVVAE-----QNRQMKGEIATHPMYDQLLAAHVACLRVA 60

Query: 61  TPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQ 120
           TPIDQLPII+AQL+ SHH+LRSYAS      A   S H+RQELDNFLAQY++VLCSFK+Q
Sbjct: 61  TPIDQLPIIEAQLSHSHHLLRSYAST-----AVGFSHHDRQELDNFLAQYVMVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALT 148
           LQQHVRVHAVEAVMACREIEN L +LT
Sbjct: 121 LQQHVRVHAVEAVMACREIENNLHSLT 137

[Close]
BLAST of Cp4.1LG05g03950 vs. Swiss-Prot
Match: KNAT7_ARATH (Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.3e-42
Identity = 100/147 (68.03%), Postives = 111/147 (75.51%), Query Frame = 1 

Query: 1   MQEPGLGMMTAAAAAAAASTAALSADVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVA 60
           MQE  LGMM  A       TA       ++  N QLK EIATHP+YEQLLAAHVACLRVA
Sbjct: 1   MQEAALGMM-GATVGGDGDTAV------VAEQNRQLKGEIATHPMYEQLLAAHVACLRVA 60

Query: 61  TPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQ 120
           TPIDQLPII+AQL+QSHH+LRSYAS     H      H+R ELDNFLAQY++VLCSFK+Q
Sbjct: 61  TPIDQLPIIEAQLSQSHHLLRSYASTAVGYH------HDRHELDNFLAQYVMVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALT 148
           LQQHVRVHAVEAVMACREIEN L +LT
Sbjct: 121 LQQHVRVHAVEAVMACREIENNLHSLT 134

[Close]
BLAST of Cp4.1LG05g03950 vs. Swiss-Prot
Match: KNOS3_ORYSJ (Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica GN=HOS66 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-38
Identity = 90/138 (65.22%), Postives = 110/138 (79.71%), Query Frame = 1 

Query: 10  TAAAAAAAASTAALSADVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPII 69
           +++A AAAA+ AA +A  + + +   LK EIA HPL EQL+AAHV CLRVATPID LP+I
Sbjct: 27  SSSATAAAAAAAAAAAAAAEAEERQLLKGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLI 86

Query: 70  DAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHA 129
           DAQLAQS  +L SYA+     H   LSPH++QELD+FLAQYM++LCSF++QLQQHVRVHA
Sbjct: 87  DAQLAQSSGLLHSYAAH----HRPFLSPHDKQELDSFLAQYMMLLCSFREQLQQHVRVHA 146

Query: 130 VEAVMACREIENTLQALT 148
           VEAVMACREIE +LQ LT
Sbjct: 147 VEAVMACREIEQSLQDLT 160

[Close]
BLAST of Cp4.1LG05g03950 vs. Swiss-Prot
Match: KNAT3_ARATH (Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.2e-33
Identity = 78/126 (61.90%), Postives = 98/126 (77.78%), Query Frame = 1 

Query: 22  ALSADVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLR 81
           A +AD  +S  NA+ KAEI +HPLYEQLL+AHVACLR+ATP+DQLP IDAQLAQS HV+ 
Sbjct: 145 ATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVA 204

Query: 82  SYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIEN 141
            Y++      A  L   ++ ELD F+  Y+++LCSFK+QLQQHVRVHA+EAVMAC EIE 
Sbjct: 205 KYSALG--AAAQGLVGDDK-ELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQ 264

Query: 142 TLQALT 148
           +LQ+LT
Sbjct: 265 SLQSLT 267

[Close]
BLAST of Cp4.1LG05g03950 vs. Swiss-Prot
Match: KNAT4_ARATH (Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=1 SV=3)

HSP 1 Score: 138.7 bits (348), Expect = 5.3e-32
Identity = 72/115 (62.61%), Postives = 93/115 (80.87%), Query Frame = 1 

Query: 33  NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHA 92
           NA+ KAEI +HPLYEQLL+AHVACLR+ATP+DQLP IDAQLAQS +V+  Y++    + A
Sbjct: 120 NARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTL---EAA 179

Query: 93  HSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQALT 148
             L   + +ELD+F+  Y+++LCSFK+QLQQHVRVHA+EAVMAC EIE +LQ+ T
Sbjct: 180 QGLLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFT 231

[Close]
BLAST of Cp4.1LG05g03950 vs. TrEMBL
Match: A0A0A0KKD3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G156150 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.4e-58
Identity = 127/151 (84.11%), Postives = 138/151 (91.39%), Query Frame = 1 

Query: 1   MQEPGLGMMTAAAAAAAASTAALSADVSISGD---NAQLKAEIATHPLYEQLLAAHVACL 60
           MQEPGLGMMTAA      S+  LS DVS+SG+   N+QLKAEIATHPLYEQLL+AHVACL
Sbjct: 1   MQEPGLGMMTAAGG----SSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACL 60

Query: 61  RVATPIDQLPIIDAQLAQSHHVLRSYAS-QQHHQHAHSLSPHERQELDNFLAQYMIVLCS 120
           RVATPIDQLP+IDAQL+QSHH+LRSYAS QQHHQ+AHSL+PHERQELDNFLAQYMIVLCS
Sbjct: 61  RVATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFLAQYMIVLCS 120

Query: 121 FKDQLQQHVRVHAVEAVMACREIENTLQALT 148
           FK+QLQQHVRVHAVEAVMACREIENTLQALT
Sbjct: 121 FKEQLQQHVRVHAVEAVMACREIENTLQALT 147

[Close]
BLAST of Cp4.1LG05g03950 vs. TrEMBL
Match: A0A061G401_THECC (KNOTTED-like homeobox of 7 OS=Theobroma cacao GN=TCM_016150 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.0e-54
Identity = 119/148 (80.41%), Postives = 133/148 (89.86%), Query Frame = 1 

Query: 1   MQEPGLGMMTAAAAAAAASTAALSADVSISGD-NAQLKAEIATHPLYEQLLAAHVACLRV 60
           MQEPGLGMM++  + A    +  S +VS+SGD N QL+AEIATHPLYEQLLAAHV+CLRV
Sbjct: 1   MQEPGLGMMSSGGSGAIGGLS--SGEVSVSGDQNRQLRAEIATHPLYEQLLAAHVSCLRV 60

Query: 61  ATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKD 120
           ATPIDQLP+IDAQLAQSH++LRSYASQ HHQH HSLSPHERQELDNFLAQY+IVLC+FK+
Sbjct: 61  ATPIDQLPLIDAQLAQSHNLLRSYASQ-HHQHGHSLSPHERQELDNFLAQYLIVLCTFKE 120

Query: 121 QLQQHVRVHAVEAVMACREIENTLQALT 148
           QLQQHVRVHAVEAVMACREIEN LQALT
Sbjct: 121 QLQQHVRVHAVEAVMACREIENNLQALT 145

[Close]
BLAST of Cp4.1LG05g03950 vs. TrEMBL
Match: A0A0D2N192_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G206600 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.5e-53
Identity = 116/148 (78.38%), Postives = 131/148 (88.51%), Query Frame = 1 

Query: 1   MQEPGLGMMTAAAAAAAASTAALSADVSISGD-NAQLKAEIATHPLYEQLLAAHVACLRV 60
           MQEPGLGMM++   +      + S +VS+SG+ N QLKAEIA HPLYEQLLAAHV+CLRV
Sbjct: 1   MQEPGLGMMSSGGGSGGIGGLS-SGEVSVSGEQNRQLKAEIAVHPLYEQLLAAHVSCLRV 60

Query: 61  ATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKD 120
           ATPIDQLP+IDAQLAQSH++LRSYASQ HHQH HSLSPHERQELDNFLAQY+IVLC+FK+
Sbjct: 61  ATPIDQLPLIDAQLAQSHNLLRSYASQ-HHQHGHSLSPHERQELDNFLAQYLIVLCTFKE 120

Query: 121 QLQQHVRVHAVEAVMACREIENTLQALT 148
           QLQQHVRVHA+EAVMACREIEN LQALT
Sbjct: 121 QLQQHVRVHAIEAVMACREIENNLQALT 146

[Close]
BLAST of Cp4.1LG05g03950 vs. TrEMBL
Match: A0A0D2R805_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G206600 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.5e-53
Identity = 116/148 (78.38%), Postives = 131/148 (88.51%), Query Frame = 1 

Query: 1   MQEPGLGMMTAAAAAAAASTAALSADVSISGD-NAQLKAEIATHPLYEQLLAAHVACLRV 60
           MQEPGLGMM++   +      + S +VS+SG+ N QLKAEIA HPLYEQLLAAHV+CLRV
Sbjct: 1   MQEPGLGMMSSGGGSGGIGGLS-SGEVSVSGEQNRQLKAEIAVHPLYEQLLAAHVSCLRV 60

Query: 61  ATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKD 120
           ATPIDQLP+IDAQLAQSH++LRSYASQ HHQH HSLSPHERQELDNFLAQY+IVLC+FK+
Sbjct: 61  ATPIDQLPLIDAQLAQSHNLLRSYASQ-HHQHGHSLSPHERQELDNFLAQYLIVLCTFKE 120

Query: 121 QLQQHVRVHAVEAVMACREIENTLQALT 148
           QLQQHVRVHA+EAVMACREIEN LQALT
Sbjct: 121 QLQQHVRVHAIEAVMACREIENNLQALT 146

[Close]
BLAST of Cp4.1LG05g03950 vs. TrEMBL
Match: V9P820_GOSHI (KNOX protein OS=Gossypium hirsutum GN=KNL1 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.5e-53
Identity = 116/148 (78.38%), Postives = 131/148 (88.51%), Query Frame = 1 

Query: 1   MQEPGLGMMTAAAAAAAASTAALSADVSISGD-NAQLKAEIATHPLYEQLLAAHVACLRV 60
           MQEPGLGMM++   +      + S +VS+SG+ N QLKAEIA HPLYEQLLAAHV+CLRV
Sbjct: 1   MQEPGLGMMSSGGGSGGIGGLS-SGEVSVSGEQNRQLKAEIAVHPLYEQLLAAHVSCLRV 60

Query: 61  ATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKD 120
           ATPIDQLP+IDAQLAQSH++LRSYASQ HHQH HSLSPHERQELDNFLAQY+IVLC+FK+
Sbjct: 61  ATPIDQLPLIDAQLAQSHNLLRSYASQ-HHQHGHSLSPHERQELDNFLAQYLIVLCTFKE 120

Query: 121 QLQQHVRVHAVEAVMACREIENTLQALT 148
           QLQQHVRVHA+EAVMACREIEN LQALT
Sbjct: 121 QLQQHVRVHAIEAVMACREIENNLQALT 146

[Close]
BLAST of Cp4.1LG05g03950 vs. TAIR10
Match: AT1G62990.1 (AT1G62990.1 KNOTTED-like homeobox of Arabidopsis thaliana 7)

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-43
Identity = 100/147 (68.03%), Postives = 111/147 (75.51%), Query Frame = 1 

Query: 1   MQEPGLGMMTAAAAAAAASTAALSADVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVA 60
           MQE  LGMM  A       TA       ++  N QLK EIATHP+YEQLLAAHVACLRVA
Sbjct: 1   MQEAALGMM-GATVGGDGDTAV------VAEQNRQLKGEIATHPMYEQLLAAHVACLRVA 60

Query: 61  TPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQ 120
           TPIDQLPII+AQL+QSHH+LRSYAS     H      H+R ELDNFLAQY++VLCSFK+Q
Sbjct: 61  TPIDQLPIIEAQLSQSHHLLRSYASTAVGYH------HDRHELDNFLAQYVMVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALT 148
           LQQHVRVHAVEAVMACREIEN L +LT
Sbjct: 121 LQQHVRVHAVEAVMACREIENNLHSLT 134

[Close]
BLAST of Cp4.1LG05g03950 vs. TAIR10
Match: AT5G25220.1 (AT5G25220.1 KNOTTED1-like homeobox gene 3)

HSP 1 Score: 141.4 bits (355), Expect = 4.6e-34
Identity = 78/126 (61.90%), Postives = 98/126 (77.78%), Query Frame = 1 

Query: 22  ALSADVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLR 81
           A +AD  +S  NA+ KAEI +HPLYEQLL+AHVACLR+ATP+DQLP IDAQLAQS HV+ 
Sbjct: 145 ATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVA 204

Query: 82  SYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIEN 141
            Y++      A  L   ++ ELD F+  Y+++LCSFK+QLQQHVRVHA+EAVMAC EIE 
Sbjct: 205 KYSALG--AAAQGLVGDDK-ELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQ 264

Query: 142 TLQALT 148
           +LQ+LT
Sbjct: 265 SLQSLT 267

[Close]
BLAST of Cp4.1LG05g03950 vs. TAIR10
Match: AT5G11060.1 (AT5G11060.1 KNOTTED1-like homeobox gene 4)

HSP 1 Score: 138.7 bits (348), Expect = 3.0e-33
Identity = 72/115 (62.61%), Postives = 93/115 (80.87%), Query Frame = 1 

Query: 33  NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHA 92
           NA+ KAEI +HPLYEQLL+AHVACLR+ATP+DQLP IDAQLAQS +V+  Y++    + A
Sbjct: 120 NARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTL---EAA 179

Query: 93  HSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQALT 148
             L   + +ELD+F+  Y+++LCSFK+QLQQHVRVHA+EAVMAC EIE +LQ+ T
Sbjct: 180 QGLLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFT 231

[Close]
BLAST of Cp4.1LG05g03950 vs. TAIR10
Match: AT4G32040.1 (AT4G32040.1 KNOTTED1-like homeobox gene 5)

HSP 1 Score: 121.7 bits (304), Expect = 3.8e-28
Identity = 64/115 (55.65%), Postives = 84/115 (73.04%), Query Frame = 1 

Query: 33  NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHA 92
           +A  KA I  HP+YEQLLAAHVACLRVATP+DQ+P IDAQL+Q H V   Y++       
Sbjct: 115 SASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYSTLG----- 174

Query: 93  HSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQALT 148
                 + +ELD+F++ Y+++LCSFK+QLQ HV VHA+EA+ AC EIE +LQ+LT
Sbjct: 175 ---VVVDNKELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQSLT 221

[Close]
BLAST of Cp4.1LG05g03950 vs. NCBI nr
Match: gi|659073680|ref|XP_008437194.1| (PREDICTED: homeobox protein knotted-1-like 7 [Cucumis melo])

HSP 1 Score: 238.4 bits (607), Expect = 7.9e-60
Identity = 127/150 (84.67%), Postives = 138/150 (92.00%), Query Frame = 1 

Query: 1   MQEPGLGMMTAAAAAAAASTAALSADVSISGD---NAQLKAEIATHPLYEQLLAAHVACL 60
           MQEPGLGMMTAA      S+  LS DVS+SG+   N+QLKAEIATHPLYEQLL+AHVACL
Sbjct: 1   MQEPGLGMMTAAGG----SSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACL 60

Query: 61  RVATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSF 120
           RVATPIDQLP+IDAQL+QSHH+LRSYASQQHHQ+AHSL+PHERQELDNFLAQYMIVLCSF
Sbjct: 61  RVATPIDQLPMIDAQLSQSHHILRSYASQQHHQNAHSLTPHERQELDNFLAQYMIVLCSF 120

Query: 121 KDQLQQHVRVHAVEAVMACREIENTLQALT 148
           K+QLQQHVRVHAVEAVMACREIENTLQALT
Sbjct: 121 KEQLQQHVRVHAVEAVMACREIENTLQALT 146

[Close]
BLAST of Cp4.1LG05g03950 vs. NCBI nr
Match: gi|449452384|ref|XP_004143939.1| (PREDICTED: homeobox protein knotted-1-like 7 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 1.9e-58
Identity = 127/151 (84.11%), Postives = 138/151 (91.39%), Query Frame = 1 

Query: 1   MQEPGLGMMTAAAAAAAASTAALSADVSISGD---NAQLKAEIATHPLYEQLLAAHVACL 60
           MQEPGLGMMTAA      S+  LS DVS+SG+   N+QLKAEIATHPLYEQLL+AHVACL
Sbjct: 1   MQEPGLGMMTAAGG----SSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACL 60

Query: 61  RVATPIDQLPIIDAQLAQSHHVLRSYAS-QQHHQHAHSLSPHERQELDNFLAQYMIVLCS 120
           RVATPIDQLP+IDAQL+QSHH+LRSYAS QQHHQ+AHSL+PHERQELDNFLAQYMIVLCS
Sbjct: 61  RVATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFLAQYMIVLCS 120

Query: 121 FKDQLQQHVRVHAVEAVMACREIENTLQALT 148
           FK+QLQQHVRVHAVEAVMACREIENTLQALT
Sbjct: 121 FKEQLQQHVRVHAVEAVMACREIENTLQALT 147

[Close]
BLAST of Cp4.1LG05g03950 vs. NCBI nr
Match: gi|590677690|ref|XP_007040089.1| (KNOTTED-like homeobox of 7 [Theobroma cacao])

HSP 1 Score: 219.9 bits (559), Expect = 2.9e-54
Identity = 119/148 (80.41%), Postives = 133/148 (89.86%), Query Frame = 1 

Query: 1   MQEPGLGMMTAAAAAAAASTAALSADVSISGD-NAQLKAEIATHPLYEQLLAAHVACLRV 60
           MQEPGLGMM++  + A    +  S +VS+SGD N QL+AEIATHPLYEQLLAAHV+CLRV
Sbjct: 1   MQEPGLGMMSSGGSGAIGGLS--SGEVSVSGDQNRQLRAEIATHPLYEQLLAAHVSCLRV 60

Query: 61  ATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKD 120
           ATPIDQLP+IDAQLAQSH++LRSYASQ HHQH HSLSPHERQELDNFLAQY+IVLC+FK+
Sbjct: 61  ATPIDQLPLIDAQLAQSHNLLRSYASQ-HHQHGHSLSPHERQELDNFLAQYLIVLCTFKE 120

Query: 121 QLQQHVRVHAVEAVMACREIENTLQALT 148
           QLQQHVRVHAVEAVMACREIEN LQALT
Sbjct: 121 QLQQHVRVHAVEAVMACREIENNLQALT 145

[Close]
BLAST of Cp4.1LG05g03950 vs. NCBI nr
Match: gi|763758366|gb|KJB25697.1| (hypothetical protein B456_004G206600 [Gossypium raimondii])

HSP 1 Score: 214.9 bits (546), Expect = 9.4e-53
Identity = 116/148 (78.38%), Postives = 131/148 (88.51%), Query Frame = 1 

Query: 1   MQEPGLGMMTAAAAAAAASTAALSADVSISGD-NAQLKAEIATHPLYEQLLAAHVACLRV 60
           MQEPGLGMM++   +      + S +VS+SG+ N QLKAEIA HPLYEQLLAAHV+CLRV
Sbjct: 1   MQEPGLGMMSSGGGSGGIGGLS-SGEVSVSGEQNRQLKAEIAVHPLYEQLLAAHVSCLRV 60

Query: 61  ATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKD 120
           ATPIDQLP+IDAQLAQSH++LRSYASQ HHQH HSLSPHERQELDNFLAQY+IVLC+FK+
Sbjct: 61  ATPIDQLPLIDAQLAQSHNLLRSYASQ-HHQHGHSLSPHERQELDNFLAQYLIVLCTFKE 120

Query: 121 QLQQHVRVHAVEAVMACREIENTLQALT 148
           QLQQHVRVHA+EAVMACREIEN LQALT
Sbjct: 121 QLQQHVRVHAIEAVMACREIENNLQALT 146

[Close]
BLAST of Cp4.1LG05g03950 vs. NCBI nr
Match: gi|540849835|gb|AGV15454.1| (KNOX protein [Gossypium hirsutum])

HSP 1 Score: 214.9 bits (546), Expect = 9.4e-53
Identity = 116/148 (78.38%), Postives = 131/148 (88.51%), Query Frame = 1 

Query: 1   MQEPGLGMMTAAAAAAAASTAALSADVSISGD-NAQLKAEIATHPLYEQLLAAHVACLRV 60
           MQEPGLGMM++   +      + S +VS+SG+ N QLKAEIA HPLYEQLLAAHV+CLRV
Sbjct: 1   MQEPGLGMMSSGGGSGGIGGLS-SGEVSVSGEQNRQLKAEIAVHPLYEQLLAAHVSCLRV 60

Query: 61  ATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKD 120
           ATPIDQLP+IDAQLAQSH++LRSYASQ HHQH HSLSPHERQELDNFLAQY+IVLC+FK+
Sbjct: 61  ATPIDQLPLIDAQLAQSHNLLRSYASQ-HHQHGHSLSPHERQELDNFLAQYLIVLCTFKE 120

Query: 121 QLQQHVRVHAVEAVMACREIENTLQALT 148
           QLQQHVRVHA+EAVMACREIEN LQALT
Sbjct: 121 QLQQHVRVHAIEAVMACREIENNLQALT 146

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g03950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HD1_BRANA2.3e-4367.35Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1[more]
KNAT7_ARATH3.3e-4268.03Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=1 SV=1[more]
KNOS3_ORYSJ1.0e-3865.22Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica GN=HOS66 PE=2 ... [more]
KNAT3_ARATH8.2e-3361.90Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1[more]
KNAT4_ARATH5.3e-3262.61Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=1 SV=3[more]
BLAST of Cp4.1LG05g03950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKD3_CUCSA1.4e-5884.11Uncharacterized protein OS=Cucumis sativus GN=Csa_5G156150 PE=4 SV=1[more]
A0A061G401_THECC2.0e-5480.41KNOTTED-like homeobox of 7 OS=Theobroma cacao GN=TCM_016150 PE=4 SV=1[more]
A0A0D2N192_GOSRA6.5e-5378.38Uncharacterized protein OS=Gossypium raimondii GN=B456_004G206600 PE=4 SV=1[more]
A0A0D2R805_GOSRA6.5e-5378.38Uncharacterized protein OS=Gossypium raimondii GN=B456_004G206600 PE=4 SV=1[more]
V9P820_GOSHI6.5e-5378.38KNOX protein OS=Gossypium hirsutum GN=KNL1 PE=2 SV=1[more]
BLAST of Cp4.1LG05g03950 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G62990.11.9e-4368.03 KNOTTED-like homeobox of Arabidopsis thaliana 7[more]
AT5G25220.14.6e-3461.90 KNOTTED1-like homeobox gene 3[more]
AT5G11060.13.0e-3362.61 KNOTTED1-like homeobox gene 4[more]
AT4G32040.13.8e-2855.65 KNOTTED1-like homeobox gene 5[more]
BLAST of Cp4.1LG05g03950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659073680|ref|XP_008437194.1|7.9e-6084.67PREDICTED: homeobox protein knotted-1-like 7 [Cucumis melo][more]
gi|449452384|ref|XP_004143939.1|1.9e-5884.11PREDICTED: homeobox protein knotted-1-like 7 [Cucumis sativus][more]
gi|590677690|ref|XP_007040089.1|2.9e-5480.41KNOTTED-like homeobox of 7 [Theobroma cacao][more]
gi|763758366|gb|KJB25697.1|9.4e-5378.38hypothetical protein B456_004G206600 [Gossypium raimondii][more]
gi|540849835|gb|AGV15454.1|9.4e-5378.38KNOX protein [Gossypium hirsutum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR005541KNOX2
IPR005540KNOX1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045010 actin nucleation
biological_process GO:0007155 cell adhesion
biological_process GO:0071555 cell wall organization
biological_process GO:0010413 glucuronoxylan metabolic process
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:2000652 regulation of secondary cell wall biogenesis
biological_process GO:0048765 root hair cell differentiation
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0045492 xylan biosynthetic process
biological_process GO:0010089 xylem development
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g03950.1Cp4.1LG05g03950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005540KNOX1PFAMPF03790KNOX1coord: 36..77
score: 5.9
IPR005540KNOX1SMARTSM01255KNOX1_2coord: 34..78
score: 2.6
IPR005541KNOX2PFAMPF03791KNOX2coord: 96..147
score: 1.1
IPR005541KNOX2SMARTSM01256KNOX2_2coord: 93..148
score: 4.4
NoneNo IPR availablePANTHERPTHR11850HOMEOBOX PROTEIN TRANSCRIPTION FACTORScoord: 32..147
score: 2.7
NoneNo IPR availablePANTHERPTHR11850:SF74HOMEOBOX PROTEIN KNOTTED-1-LIKE 7coord: 32..147
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g03950Lsi09G003190Bottle gourd (USVL1VR-Ls)cpelsiB582
Cp4.1LG05g03950MELO3C005620.2Melon (DHL92) v3.6.1cpemedB774
Cp4.1LG05g03950CsaV3_5G003340Cucumber (Chinese Long) v3cpecucB0915
Cp4.1LG05g03950Bhi12G000297Wax gourdcpewgoB0920
Cp4.1LG05g03950CsGy5G003250Cucumber (Gy14) v2cgybcpeB691
Cp4.1LG05g03950Carg02497Silver-seed gourdcarcpeB1282
Cp4.1LG05g03950Carg16665Silver-seed gourdcarcpeB1298
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g03950Cp4.1LG13g01870Cucurbita pepo (Zucchini)cpecpeB226
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g03950Melon (DHL92) v3.6.1cpemedB831
Cp4.1LG05g03950Cucumber (Chinese Long) v3cpecucB0896
Cp4.1LG05g03950Wax gourdcpewgoB0929
Cp4.1LG05g03950Cucurbita pepo (Zucchini)cpecpeB058
Cp4.1LG05g03950Cucumber (Gy14) v1cgycpeB0686
Cp4.1LG05g03950Cucumber (Gy14) v1cgycpeB0792
Cp4.1LG05g03950Cucurbita maxima (Rimu)cmacpeB329
Cp4.1LG05g03950Cucurbita maxima (Rimu)cmacpeB361
Cp4.1LG05g03950Cucurbita maxima (Rimu)cmacpeB647
Cp4.1LG05g03950Cucurbita moschata (Rifu)cmocpeB292
Cp4.1LG05g03950Cucurbita moschata (Rifu)cmocpeB326
Cp4.1LG05g03950Cucurbita moschata (Rifu)cmocpeB596
Cp4.1LG05g03950Wild cucumber (PI 183967)cpecpiB721
Cp4.1LG05g03950Wild cucumber (PI 183967)cpecpiB738
Cp4.1LG05g03950Cucumber (Chinese Long) v2cpecuB719
Cp4.1LG05g03950Cucumber (Chinese Long) v2cpecuB736
Cp4.1LG05g03950Bottle gourd (USVL1VR-Ls)cpelsiB624
Cp4.1LG05g03950Watermelon (Charleston Gray)cpewcgB639
Cp4.1LG05g03950Watermelon (Charleston Gray)cpewcgB676
Cp4.1LG05g03950Watermelon (97103) v1cpewmB703
Cp4.1LG05g03950Watermelon (97103) v1cpewmB717
Cp4.1LG05g03950Melon (DHL92) v3.5.1cpemeB647
Cp4.1LG05g03950Melon (DHL92) v3.5.1cpemeB697
Cp4.1LG05g03950Cucumber (Gy14) v2cgybcpeB427