Carg02497 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02497
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Homeobox protein knotted-1, putative
Location	Cucurbita_argyrosperma_scaffold_009 : 261221 .. 262042 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGGTGCAGAAAGTTTCGTGTCTCGGATCCCTATATACCTCCTTCACTATCTCCTTCCTACAAAACTCTCCCTTCTCCATCACCATTTTCAATCACAAAACCCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAATCAAAACACCCTCACCTCCTCTTCCTTCCGTCCTTCTCTCTTTCCAGTTTCAAATGCAAGAACCTGGGTTGGGAATGATGACTGCTGCTGCTGCTGCCGCCGCCTCTACTGCTGCCTTAAGCGGCGACGTTTCCATCTCCGGTGACAACGCCCAACTCAAGGCTGAGATTGCTACTCATCCGCTTTATGAGCAGCTTTTAGCCGCACATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGACCAGCTTCCAATCATCGACGCTCAGTTGGCTCAATCGCACCACGTTTTGCGATCTTATGCCTCTCAGCAGCATCACCAACATGCCCATTCCTTATCGCCTCACGAGCGCCAAGAACTCGACAATTTCCTAGTCAGTTTTTTCACTTTTTCTTTTAACTTAAATATTGGTTGAGTTTGGTTTCATTTTGTGATGCTTTTCTTTTTTCTTCAGGCGCAGTATATGATCGTTTTGTGCTCTTTTAAAGACCAGCTTCAGCAACATGTGAGGGTTCACGCAGTGGAAGCTGTTATGGCATGCCGTGAAATTGAAAATACTCTACAAGCTCTTACAGGTATCTCACGTCAATTCCTCCAAAACAAACCCATGATTTTGCTTCCAACTTTGAATGTGAAAACCTTGACATAG

mRNA sequence

AGTGGTGCAGAAAGTTTCGTGTCTCGGATCCCTATATACCTCCTTCACTATCTCCTTCCTACAAAACTCTCCCTTCTCCATCACCATTTTCAATCACAAAACCCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAATCAAAACACCCTCACCTCCTCTTCCTTCCGTCCTTCTCTCTTTCCAGTTTCAAATGCAAGAACCTGGGTTGGGAATGATGACTGCTGCTGCTGCTGCCGCCGCCTCTACTGCTGCCTTAAGCGGCGACGTTTCCATCTCCGGTGACAACGCCCAACTCAAGGCTGAGATTGCTACTCATCCGCTTTATGAGCAGCTTTTAGCCGCACATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGACCAGCTTCCAATCATCGACGCTCAGTTGGCTCAATCGCACCACGTTTTGCGATCTTATGCCTCTCAGCAGCATCACCAACATGCCCATTCCTTATCGCCTCACGAGCGCCAAGAACTCGACAATTTCCTAGCGCAGTATATGATCGTTTTGTGCTCTTTTAAAGACCAGCTTCAGCAACATGTGAGGGTTCACGCAGTGGAAGCTGTTATGGCATGCCGTGAAATTGAAAATACTCTACAAGCTCTTACAGGTATCTCACGTCAATTCCTCCAAAACAAACCCATGATTTTGCTTCCAACTTTGAATGTGAAAACCTTGACATAG

Coding sequence (CDS)

AGTGGTGCAGAAAGTTTCGTGTCTCGGATCCCTATATACCTCCTTCACTATCTCCTTCCTACAAAACTCTCCCTTCTCCATCACCATTTTCAATCACAAAACCCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAATCAAAACACCCTCACCTCCTCTTCCTTCCGTCCTTCTCTCTTTCCAGTTTCAAATGCAAGAACCTGGGTTGGGAATGATGACTGCTGCTGCTGCTGCCGCCGCCTCTACTGCTGCCTTAAGCGGCGACGTTTCCATCTCCGGTGACAACGCCCAACTCAAGGCTGAGATTGCTACTCATCCGCTTTATGAGCAGCTTTTAGCCGCACATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGACCAGCTTCCAATCATCGACGCTCAGTTGGCTCAATCGCACCACGTTTTGCGATCTTATGCCTCTCAGCAGCATCACCAACATGCCCATTCCTTATCGCCTCACGAGCGCCAAGAACTCGACAATTTCCTAGCGCAGTATATGATCGTTTTGTGCTCTTTTAAAGACCAGCTTCAGCAACATGTGAGGGTTCACGCAGTGGAAGCTGTTATGGCATGCCGTGAAATTGAAAATACTCTACAAGCTCTTACAGGTATCTCACGTCAATTCCTCCAAAACAAACCCATGATTTTGCTTCCAACTTTGAATGTGAAAACCTTGACATAG

Protein sequence

SGAESFVSRIPIYLLHYLLPTKLSLLHHHFQSQNPFSSSSSSSSSSSSSSSSSSSSSSIKTPSPPLPSVLLSFQFQMQEPGLGMMTAAAAAAASTAALSGDVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQALTGISRQFLQNKPMILLPTLNVKTLT

Homology

[Close]

BLAST of Carg02497 vs. NCBI nr
Match: XP_022995883.1 (homeobox protein knotted-1-like 7 [Cucurbita maxima])

HSP 1 Score: 248.8 bits (634), Expect = 1.9e-62
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 98  LSGDVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRS 157
           LSGDVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRS
Sbjct: 22  LSGDVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRS 81

Query: 158 YASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENT 217
           YASQQHHQHAHSLSPH+RQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENT
Sbjct: 82  YASQQHHQHAHSLSPHDRQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENT 141

Query: 218 LQALTGIS 226
           LQALTG+S
Sbjct: 142 LQALTGVS 149

[Close]

BLAST of Carg02497 vs. NCBI nr
Match: XP_022958449.1 (homeobox protein knotted-1-like 7 [Cucurbita moschata])

HSP 1 Score: 248.4 bits (633), Expect = 2.5e-62
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 99  SGDVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSY 158
           SGDVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSY
Sbjct: 25  SGDVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSY 84

Query: 159 ASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTL 218
           ASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTL
Sbjct: 85  ASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTL 144

Query: 219 QALTGIS 226
           QALTG+S
Sbjct: 145 QALTGVS 151

[Close]

BLAST of Carg02497 vs. NCBI nr
Match: XP_023532817.1 (homeobox protein knotted-1-like 7 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023532818.1 homeobox protein knotted-1-like 7 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.6 bits (623), Expect = 3.5e-61
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 101 DVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYAS 160
           DVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYAS
Sbjct: 26  DVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYAS 85

Query: 161 QQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQA 220
           QQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQA
Sbjct: 86  QQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQA 145

Query: 221 LTGIS 226
           LTG+S
Sbjct: 146 LTGVS 150

[Close]

BLAST of Carg02497 vs. NCBI nr
Match: XP_008437194.1 (PREDICTED: homeobox protein knotted-1-like 7 [Cucumis melo])

HSP 1 Score: 232.3 bits (591), Expect = 1.8e-57
Identity = 117/131 (89.31%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 98  LSGDVSISGD---NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHV 157
           LSGDVS+SG+   N+QLKAEIATHPLYEQLL+AHVACLRVATPIDQLP+IDAQL+QSHH+
Sbjct: 19  LSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHI 78

Query: 158 LRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREI 217
           LRSYASQQHHQ+AHSL+PHERQELDNFLAQYMIVLCSFK+QLQQHVRVHAVEAVMACREI
Sbjct: 79  LRSYASQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREI 138

Query: 218 ENTLQALTGIS 226
           ENTLQALTG+S
Sbjct: 139 ENTLQALTGVS 149

[Close]

BLAST of Carg02497 vs. NCBI nr
Match: XP_004143939.1 (PREDICTED: homeobox protein knotted-1-like 7 [Cucumis sativus] >KGN50155.1 hypothetical protein Csa_5G156150 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 4.5e-56
Identity = 117/132 (88.64%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 98  LSGDVSISGD---NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHV 157
           LSGDVS+SG+   N+QLKAEIATHPLYEQLL+AHVACLRVATPIDQLP+IDAQL+QSHH+
Sbjct: 19  LSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHI 78

Query: 158 LRSYA-SQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACRE 217
           LRSYA SQQHHQ+AHSL+PHERQELDNFLAQYMIVLCSFK+QLQQHVRVHAVEAVMACRE
Sbjct: 79  LRSYASSQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACRE 138

Query: 218 IENTLQALTGIS 226
           IENTLQALTG+S
Sbjct: 139 IENTLQALTGVS 150

[Close]

BLAST of Carg02497 vs. TAIR10
Match: AT1G62990.1 (KNOTTED-like homeobox of Arabidopsis thaliana 7)

HSP 1 Score: 176.8 bits (447), Expect = 1.6e-44
Identity = 93/125 (74.40%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 100 GDVSISGD-NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSY 159
           GD ++  + N QLK EIATHP+YEQLLAAHVACLRVATPIDQLPII+AQL+QSHH+LRSY
Sbjct: 17  GDTAVVAEQNRQLKGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHHLLRSY 76

Query: 160 ASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTL 219
           AS     H      H+R ELDNFLAQY++VLCSFK+QLQQHVRVHAVEAVMACREIEN L
Sbjct: 77  ASTAVGYH------HDRHELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNL 135

Query: 220 QALTG 224
            +LTG
Sbjct: 137 HSLTG 135

[Close]

BLAST of Carg02497 vs. TAIR10
Match: AT5G25220.1 (KNOTTED1-like homeobox gene 3)

HSP 1 Score: 146.4 bits (368), Expect = 2.4e-35
Identity = 78/127 (61.42%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 99  SGDVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSY 158
           + D  +S  NA+ KAEI +HPLYEQLL+AHVACLR+ATP+DQLP IDAQLAQS HV+  Y
Sbjct: 147 AADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAKY 206

Query: 159 ASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTL 218
           ++      A  L   ++ ELD F+  Y+++LCSFK+QLQQHVRVHA+EAVMAC EIE +L
Sbjct: 207 SAL--GAAAQGLVGDDK-ELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSL 266

Query: 219 QALTGIS 226
           Q+LTG+S
Sbjct: 267 QSLTGVS 270

[Close]

BLAST of Carg02497 vs. TAIR10
Match: AT5G11060.1 (KNOTTED1-like homeobox gene 4)

HSP 1 Score: 144.8 bits (364), Expect = 6.9e-35
Identity = 74/118 (62.71%), Postives = 96/118 (81.36%), Query Frame = 0


Query: 108 NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHA 167
           NA+ KAEI +HPLYEQLL+AHVACLR+ATP+DQLP IDAQLAQS +V+  Y++    + A
Sbjct: 120 NARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTL---EAA 179

Query: 168 HSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQALTGIS 226
             L   + +ELD+F+  Y+++LCSFK+QLQQHVRVHA+EAVMAC EIE +LQ+ TG+S
Sbjct: 180 QGLLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVS 234

[Close]

BLAST of Carg02497 vs. TAIR10
Match: AT4G32040.1 (KNOTTED1-like homeobox gene 5)

HSP 1 Score: 128.6 bits (322), Expect = 5.1e-30
Identity = 68/127 (53.54%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 108 NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHA 167
           +A  KA I  HP+YEQLLAAHVACLRVATP+DQ+P IDAQL+Q H V   Y++       
Sbjct: 115 SASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYSTLG----- 174

Query: 168 HSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQALTGISRQ 227
                 + +ELD+F++ Y+++LCSFK+QLQ HV VHA+EA+ AC EIE +LQ+LTG+S  
Sbjct: 175 ---VVVDNKELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQSLTGVSPS 233

Query: 228 FLQNKPM 235
               K M
Sbjct: 235 ESNGKTM 233

[Close]

BLAST of Carg02497 vs. Swiss-Prot
Match: sp|P46606|HD1_BRANA (Homeobox protein HD1 OS=Brassica napus OX=3708 GN=HD1 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.3e-43
Identity = 92/125 (73.60%), Postives = 106/125 (84.80%), Query Frame = 0


Query: 100 GDVSISGD-NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSY 159
           GD ++  + N Q+K EIATHP+Y+QLLAAHVACLRVATPIDQLPII+AQL+ SHH+LRSY
Sbjct: 19  GDAAVVAEQNRQMKGEIATHPMYDQLLAAHVACLRVATPIDQLPIIEAQLSHSHHLLRSY 78

Query: 160 ASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTL 219
           AS      A   S H+RQELDNFLAQY++VLCSFK+QLQQHVRVHAVEAVMACREIEN L
Sbjct: 79  AST-----AVGFSHHDRQELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNL 138

Query: 220 QALTG 224
            +LTG
Sbjct: 139 HSLTG 138

[Close]

BLAST of Carg02497 vs. Swiss-Prot
Match: sp|Q9FPQ8|KNAT7_ARATH (Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana OX=3702 GN=KNAT7 PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.0e-43
Identity = 93/125 (74.40%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 100 GDVSISGD-NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSY 159
           GD ++  + N QLK EIATHP+YEQLLAAHVACLRVATPIDQLPII+AQL+QSHH+LRSY
Sbjct: 17  GDTAVVAEQNRQLKGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHHLLRSY 76

Query: 160 ASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTL 219
           AS     H      H+R ELDNFLAQY++VLCSFK+QLQQHVRVHAVEAVMACREIEN L
Sbjct: 77  ASTAVGYH------HDRHELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNL 135

Query: 220 QALTG 224
            +LTG
Sbjct: 137 HSLTG 135

[Close]

BLAST of Carg02497 vs. Swiss-Prot
Match: sp|Q94LW3|KNOS3_ORYSJ (Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=HOS66 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.9e-38
Identity = 83/113 (73.45%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 111 LKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSL 170
           LK EIA HPL EQL+AAHV CLRVATPID LP+IDAQLAQS  +L SYA+     H   L
Sbjct: 53  LKGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAA----HHRPFL 112

Query: 171 SPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQALTG 224
           SPH++QELD+FLAQYM++LCSF++QLQQHVRVHAVEAVMACREIE +LQ LTG
Sbjct: 113 SPHDKQELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDLTG 161

[Close]

BLAST of Carg02497 vs. Swiss-Prot
Match: sp|P48000|KNAT3_ARATH (Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana OX=3702 GN=KNAT3 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.3e-34
Identity = 78/127 (61.42%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 99  SGDVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSY 158
           + D  +S  NA+ KAEI +HPLYEQLL+AHVACLR+ATP+DQLP IDAQLAQS HV+  Y
Sbjct: 147 AADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAKY 206

Query: 159 ASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTL 218
           ++      A  L   ++ ELD F+  Y+++LCSFK+QLQQHVRVHA+EAVMAC EIE +L
Sbjct: 207 SAL--GAAAQGLVGDDK-ELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSL 266

Query: 219 QALTGIS 226
           Q+LTG+S
Sbjct: 267 QSLTGVS 270

[Close]

BLAST of Carg02497 vs. Swiss-Prot
Match: sp|P48001|KNAT4_ARATH (Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana OX=3702 GN=KNAT4 PE=1 SV=3)

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-33
Identity = 74/118 (62.71%), Postives = 96/118 (81.36%), Query Frame = 0


Query: 108 NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHA 167
           NA+ KAEI +HPLYEQLL+AHVACLR+ATP+DQLP IDAQLAQS +V+  Y++    + A
Sbjct: 120 NARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTL---EAA 179

Query: 168 HSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQALTGIS 226
             L   + +ELD+F+  Y+++LCSFK+QLQQHVRVHA+EAVMAC EIE +LQ+ TG+S
Sbjct: 180 QGLLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVS 234

[Close]

BLAST of Carg02497 vs. TrEMBL
Match: tr|A0A1S3ATE3|A0A1S3ATE3_CUCME (homeobox protein knotted-1-like 7 OS=Cucumis melo OX=3656 GN=LOC103482695 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.2e-57
Identity = 117/131 (89.31%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 98  LSGDVSISGD---NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHV 157
           LSGDVS+SG+   N+QLKAEIATHPLYEQLL+AHVACLRVATPIDQLP+IDAQL+QSHH+
Sbjct: 19  LSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHI 78

Query: 158 LRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREI 217
           LRSYASQQHHQ+AHSL+PHERQELDNFLAQYMIVLCSFK+QLQQHVRVHAVEAVMACREI
Sbjct: 79  LRSYASQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREI 138

Query: 218 ENTLQALTGIS 226
           ENTLQALTG+S
Sbjct: 139 ENTLQALTGVS 149

[Close]

BLAST of Carg02497 vs. TrEMBL
Match: tr|A0A0A0KKD3|A0A0A0KKD3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G156150 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.0e-56
Identity = 117/132 (88.64%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 98  LSGDVSISGD---NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHV 157
           LSGDVS+SG+   N+QLKAEIATHPLYEQLL+AHVACLRVATPIDQLP+IDAQL+QSHH+
Sbjct: 19  LSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHI 78

Query: 158 LRSYA-SQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACRE 217
           LRSYA SQQHHQ+AHSL+PHERQELDNFLAQYMIVLCSFK+QLQQHVRVHAVEAVMACRE
Sbjct: 79  LRSYASSQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACRE 138

Query: 218 IENTLQALTGIS 226
           IENTLQALTG+S
Sbjct: 139 IENTLQALTGVS 150

[Close]

BLAST of Carg02497 vs. TrEMBL
Match: tr|A0A061G401|A0A061G401_THECC (KNOTTED-like homeobox of 7 OS=Theobroma cacao OX=3641 GN=TCM_016150 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.1e-54
Identity = 112/128 (87.50%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 99  SGDVSISGD-NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRS 158
           SG+VS+SGD N QL+AEIATHPLYEQLLAAHV+CLRVATPIDQLP+IDAQLAQSH++LRS
Sbjct: 22  SGEVSVSGDQNRQLRAEIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHNLLRS 81

Query: 159 YASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENT 218
           YAS QHHQH HSLSPHERQELDNFLAQY+IVLC+FK+QLQQHVRVHAVEAVMACREIEN 
Sbjct: 82  YAS-QHHQHGHSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACREIENN 141

Query: 219 LQALTGIS 226
           LQALTG+S
Sbjct: 142 LQALTGVS 148

[Close]

BLAST of Carg02497 vs. TrEMBL
Match: tr|A0A1R3IEK7|A0A1R3IEK7_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_23792 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.2e-53
Identity = 110/128 (85.94%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 99  SGDVSISGD-NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRS 158
           SG+VS+SG+ N QLKAEIATHPLYEQLLAAHV+CLRVATPIDQLP+IDAQLAQSH++LRS
Sbjct: 22  SGEVSVSGEQNRQLKAEIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHNLLRS 81

Query: 159 YASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENT 218
           YAS QHHQH HS+SPH+RQELDNFLAQY+IVLC+FK+QLQQHVRVHAVEAVMACREIEN 
Sbjct: 82  YAS-QHHQHGHSVSPHDRQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACREIENN 141

Query: 219 LQALTGIS 226
           LQALTG+S
Sbjct: 142 LQALTGVS 148

[Close]

BLAST of Carg02497 vs. TrEMBL
Match: tr|A0A0D2R805|A0A0D2R805_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G206600 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.8e-53
Identity = 110/128 (85.94%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 99  SGDVSISGD-NAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRS 158
           SG+VS+SG+ N QLKAEIA HPLYEQLLAAHV+CLRVATPIDQLP+IDAQLAQSH++LRS
Sbjct: 23  SGEVSVSGEQNRQLKAEIAVHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLAQSHNLLRS 82

Query: 159 YASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENT 218
           YAS QHHQH HSLSPHERQELDNFLAQY+IVLC+FK+QLQQHVRVHA+EAVMACREIEN 
Sbjct: 83  YAS-QHHQHGHSLSPHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAIEAVMACREIENN 142

Query: 219 LQALTGIS 226
           LQALTG+S
Sbjct: 143 LQALTGLS 149

The following BLAST results are available for this feature:

BLAST of Carg02497 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022995883.1	1.9e-62	98.44	homeobox protein knotted-1-like 7 [Cucurbita maxima]	[more]
XP_022958449.1	2.5e-62	99.21	homeobox protein knotted-1-like 7 [Cucurbita moschata]	[more]
XP_023532817.1	3.5e-61	99.20	homeobox protein knotted-1-like 7 isoform X1 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
XP_008437194.1	1.8e-57	89.31	PREDICTED: homeobox protein knotted-1-like 7 [Cucumis melo]	[more]
XP_004143939.1	4.5e-56	88.64	PREDICTED: homeobox protein knotted-1-like 7 [Cucumis sativus] >KGN50155.1 hypot...	[more]

BLAST of Carg02497 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G62990.1	1.6e-44	74.40	KNOTTED-like homeobox of Arabidopsis thaliana 7	[more]
AT5G25220.1	2.4e-35	61.42	KNOTTED1-like homeobox gene 3	[more]
AT5G11060.1	6.9e-35	62.71	KNOTTED1-like homeobox gene 4	[more]
AT4G32040.1	5.1e-30	53.54	KNOTTED1-like homeobox gene 5	[more]

BLAST of Carg02497 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P46606\|HD1_BRANA	1.3e-43	73.60	Homeobox protein HD1 OS=Brassica napus OX=3708 GN=HD1 PE=2 SV=1	[more]
sp\|Q9FPQ8\|KNAT7_ARATH	3.0e-43	74.40	Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana OX=3702 GN=KNAT7 PE=1 ...	[more]
sp\|Q94LW3\|KNOS3_ORYSJ	4.9e-38	73.45	Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=HO...	[more]
sp\|P48000\|KNAT3_ARATH	4.3e-34	61.42	Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana OX=3702 GN=KNAT3 PE=1 ...	[more]
sp\|P48001\|KNAT4_ARATH	1.3e-33	62.71	Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana OX=3702 GN=KNAT4 PE=1 ...	[more]

BLAST of Carg02497 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3ATE3\|A0A1S3ATE3_CUCME	1.2e-57	89.31	homeobox protein knotted-1-like 7 OS=Cucumis melo OX=3656 GN=LOC103482695 PE=3 S...	[more]
tr\|A0A0A0KKD3\|A0A0A0KKD3_CUCSA	3.0e-56	88.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G156150 PE=3 SV=1	[more]
tr\|A0A061G401\|A0A061G401_THECC	8.1e-54	87.50	KNOTTED-like homeobox of 7 OS=Theobroma cacao OX=3641 GN=TCM_016150 PE=3 SV=1	[more]
tr\|A0A1R3IEK7\|A0A1R3IEK7_9ROSI	5.2e-53	85.94	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_23792 PE=3 SV=1	[more]
tr\|A0A0D2R805\|A0A0D2R805_GOSRA	6.8e-53	85.94	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G206600 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR005541	KNOX2
IPR005540	KNOX1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02497-RA	Carg02497-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005540	KNOX1	SMART	SM01255	KNOX1_2	coord: 109..153 e-value: 2.6E-19 score: 80.2
IPR005540	KNOX1	PFAM	PF03790	KNOX1	coord: 111..152 e-value: 1.1E-17 score: 63.4
IPR005541	KNOX2	SMART	SM01256	KNOX2_2	coord: 168..223 e-value: 5.0E-24 score: 95.8
IPR005541	KNOX2	PFAM	PF03791	KNOX2	coord: 171..222 e-value: 2.9E-17 score: 62.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..62
None	No IPR available	PANTHER	PTHR11850:SF192	SUBFAMILY NOT NAMED	coord: 77..225
None	No IPR available	PANTHER	PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	coord: 77..225

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02497	Cla011498	Watermelon (97103) v1	carwmB0925
Carg02497	Csa5G156150	Cucumber (Chinese Long) v2	carcuB0939
Carg02497	MELO3C005620	Melon (DHL92) v3.5.1	carmeB0903
Carg02497	ClCG01G003250	Watermelon (Charleston Gray)	carwcgB0898
Carg02497	CSPI05G05970	Wild cucumber (PI 183967)	carcpiB0961
Carg02497	Cucsa.302660	Cucumber (Gy14) v1	carcgyB1043
Carg02497	CmaCh02G014920	Cucurbita maxima (Rimu)	carcmaB1268
Carg02497	CmaCh15G011890	Cucurbita maxima (Rimu)	carcmaB1261
Carg02497	CmoCh02G015310	Cucurbita moschata (Rifu)	carcmoB1237
Carg02497	Lsi09G003190	Bottle gourd (USVL1VR-Ls)	carlsiB836
Carg02497	Cp4.1LG13g01870	Cucurbita pepo (Zucchini)	carcpeB1271
Carg02497	Cp4.1LG05g03950	Cucurbita pepo (Zucchini)	carcpeB1282
Carg02497	CsGy5G003250	Cucumber (Gy14) v2	carcgybB0912
Carg02497	MELO3C005620.2	Melon (DHL92) v3.6.1	carmedB0910
Carg02497	CsaV3_5G003340	Cucumber (Chinese Long) v3	carcucB0963
Carg02497	Cla97C01G003320	Watermelon (97103) v2	carwmbB0963
Carg02497	Bhi12G000297	Wax gourd	carwgoB1063

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02497	Carg16665	Silver-seed gourd	carcarB643

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02497	Cucumber (Gy14) v2	carcgybB0906
Carg02497	Cucumber (Gy14) v2	carcgybB0913
Carg02497	Cucumber (Gy14) v1	carcgyB1042
Carg02497	Cucurbita maxima (Rimu)	carcmaB1264
Carg02497	Cucurbita moschata (Rifu)	carcmoB1230
Carg02497	Cucurbita moschata (Rifu)	carcmoB1234
Carg02497	Cucurbita pepo (Zucchini)	carcpeB1267
Carg02497	Cucurbita pepo (Zucchini)	carcpeB1272
Carg02497	Wild cucumber (PI 183967)	carcpiB0955
Carg02497	Wild cucumber (PI 183967)	carcpiB0962
Carg02497	Cucumber (Chinese Long) v2	carcuB0933
Carg02497	Cucumber (Chinese Long) v2	carcuB0940
Carg02497	Cucumber (Chinese Long) v3	carcucB0956
Carg02497	Cucumber (Chinese Long) v3	carcucB0964
Carg02497	Bottle gourd (USVL1VR-Ls)	carlsiB841
Carg02497	Bottle gourd (USVL1VR-Ls)	carlsiB837
Carg02497	Melon (DHL92) v3.5.1	carmeB0911
Carg02497	Melon (DHL92) v3.6.1	carmedB0918
Carg02497	Watermelon (Charleston Gray)	carwcgB0899
Carg02497	Watermelon (Charleston Gray)	carwcgB0903
Carg02497	Watermelon (97103) v1	carwmB0920
Carg02497	Watermelon (97103) v1	carwmB0926
Carg02497	Watermelon (97103) v2	carwmbB0969
Carg02497	Wax gourd	carwgoB1065