Cp4.1LG05g01370 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG05g01370
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG05 : 261312 .. 261599 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCACCATTCTGTTACCTAATCCTATGGAGGCAGCAAGGGTTATGAGCGGAGACAAATGGATGAAGGCGAAGCAAGATATAGCCTTTGTGTTGCCTATTCAAGTCCTGCAGCGTGCCCCGGTGCCACCGTCCGGTCGCAACCCGTGCAGCACCATTCCTGGGCAAAGCAATGGCCGATGCACCCTCCAGACGATGAATGTCGCAGGTGGCCCTGCCCGCTTCGTCCAGGCGCCGCCTGCTATTCACGACCCGGCTCCCATTGCCTCAGCTGCTCAAAGTTCTTGA

mRNA sequence

ATGTTCACCATTCTGTTACCTAATCCTATGGAGGCAGCAAGGGTTATGAGCGGAGACAAATGGATGAAGGCGAAGCAAGATATAGCCTTTGTGTTGCCTATTCAAGTCCTGCAGCGTGCCCCGGTGCCACCGTCCGGTCGCAACCCGTGCAGCACCATTCCTGGGCAAAGCAATGGCCGATGCACCCTCCAGACGATGAATGTCGCAGGTGGCCCTGCCCGCTTCGTCCAGGCGCCGCCTGCTATTCACGACCCGGCTCCCATTGCCTCAGCTGCTCAAAGTTCTTGA

Coding sequence (CDS)

ATGTTCACCATTCTGTTACCTAATCCTATGGAGGCAGCAAGGGTTATGAGCGGAGACAAATGGATGAAGGCGAAGCAAGATATAGCCTTTGTGTTGCCTATTCAAGTCCTGCAGCGTGCCCCGGTGCCACCGTCCGGTCGCAACCCGTGCAGCACCATTCCTGGGCAAAGCAATGGCCGATGCACCCTCCAGACGATGAATGTCGCAGGTGGCCCTGCCCGCTTCGTCCAGGCGCCGCCTGCTATTCACGACCCGGCTCCCATTGCCTCAGCTGCTCAAAGTTCTTGA

Protein sequence

MFTILLPNPMEAARVMSGDKWMKAKQDIAFVLPIQVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTMNVAGGPARFVQAPPAIHDPAPIASAAQSS
BLAST of Cp4.1LG05g01370 vs. TrEMBL
Match: A0A0A0LCX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G391390 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.3e-18
Identity = 61/91 (67.03%), Postives = 67/91 (73.63%), Query Frame = 1

Query: 10  MEAARVMSGDKWMKAKQD--IAFVLPI-QVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTM 69
           M  ARVM  +KWMK +++    FVLPI QVLQRAPVPPSGRNPC+ IPGQSNGRCTLQTM
Sbjct: 22  MVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM 81

Query: 70  NVAGGPARFVQA-PPAIHDPA-PIASAAQSS 96
           NVAG    FV A PP I D A  + S AQSS
Sbjct: 82  NVAG--HHFVHARPPPIPDSALNVDSTAQSS 110

BLAST of Cp4.1LG05g01370 vs. TrEMBL
Match: A0A061F0W9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_026263 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.8e-09
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 1

Query: 32 LPIQVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTMNVAGGPARFVQAPP 81
          L +Q LQR PVPPSG NPC+ IPG+S GRCTL  MNVAGG    V  PP
Sbjct: 43 LIVQSLQRGPVPPSGGNPCTNIPGRSRGRCTLSEMNVAGGGGGMVAHPP 91

BLAST of Cp4.1LG05g01370 vs. TrEMBL
Match: A0A0D2PI32_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G248500 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.1e-08
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 1

Query: 32 LPIQVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTMNVAGGPA--RFV-QAPPAIHD 85
          L IQ+L R PVPPS  NPC+ IPG+S+GRCTL  MNVAGG +  R V  APP   D
Sbjct: 41 LTIQLLPRGPVPPSAGNPCTNIPGRSHGRCTLTEMNVAGGGSHNRVVHHAPPTFSD 96

BLAST of Cp4.1LG05g01370 vs. TrEMBL
Match: B9I5L3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04080g PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.9e-07
Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 1

Query: 12  AARVMSGDKWMKAKQDIAFVLPIQVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTMNVAGG 71
           AAR + G++W +       V  IQ LQR PVPPSG +PC+ IPG+ +G+C+L  MN AG 
Sbjct: 29  AARPLEGERWSEK-----IVGNIQSLQRGPVPPSGGSPCTHIPGRGSGKCSLGEMNFAGH 88

Query: 72  PARFVQAPPAIHDPAPIASAAQSS 96
                 APPA  D      AA S+
Sbjct: 89  TVAL--APPAFPDAIMNFGAAAST 105

BLAST of Cp4.1LG05g01370 vs. TrEMBL
Match: I1JRQ4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G248900 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 36/92 (39.13%), Postives = 46/92 (50.00%), Query Frame = 1

Query: 1  MFTILLPNPMEAARVMSGDKWMKAKQDIAFVLPIQVLQRAPVPPSGRNPCSTIPGQSNGR 60
          M  +L        R + G++W+         L +  LQR PV  S RNPCST+PG+S GR
Sbjct: 14 MILVLSLEKTRGTRTLEGEQWLHNN------LVLHSLQRGPVRSSQRNPCSTVPGRSRGR 73

Query: 61 CTLQTMNVAGGPARFVQAPPAIHDPAPIASAA 93
          CTL  +NVAG       APP   +  P   AA
Sbjct: 74 CTLGEINVAG----HHHAPPLFQNVVPKFGAA 95

BLAST of Cp4.1LG05g01370 vs. NCBI nr
Match: gi|659123868|ref|XP_008461883.1| (PREDICTED: uncharacterized protein LOC103500372 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-19
Identity = 62/91 (68.13%), Postives = 69/91 (75.82%), Query Frame = 1

Query: 10  MEAARVMSGDKWMKAKQDIA--FVLPI-QVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTM 69
           M  ARVM G+KWMK ++     F+LPI QVLQRAPVPPSGRNPC+ IPGQS+GRCTLQTM
Sbjct: 22  MVGARVMKGEKWMKDEKTDHRNFLLPIIQVLQRAPVPPSGRNPCTGIPGQSSGRCTLQTM 81

Query: 70  NVAGGPARFVQA-PPAIHDPAP-IASAAQSS 96
           NVAG    FV A PPAI D  P +AS AQSS
Sbjct: 82  NVAG--HHFVHARPPAIPDSGPDVASTAQSS 110

BLAST of Cp4.1LG05g01370 vs. NCBI nr
Match: gi|700202788|gb|KGN57921.1| (hypothetical protein Csa_3G391390 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 6.2e-18
Identity = 61/91 (67.03%), Postives = 67/91 (73.63%), Query Frame = 1

Query: 10  MEAARVMSGDKWMKAKQD--IAFVLPI-QVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTM 69
           M  ARVM  +KWMK +++    FVLPI QVLQRAPVPPSGRNPC+ IPGQSNGRCTLQTM
Sbjct: 22  MVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM 81

Query: 70  NVAGGPARFVQA-PPAIHDPA-PIASAAQSS 96
           NVAG    FV A PP I D A  + S AQSS
Sbjct: 82  NVAG--HHFVHARPPPIPDSALNVDSTAQSS 110

BLAST of Cp4.1LG05g01370 vs. NCBI nr
Match: gi|590642366|ref|XP_007030498.1| (Uncharacterized protein TCM_026263 [Theobroma cacao])

HSP 1 Score: 68.6 bits (166), Expect = 6.9e-09
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 1

Query: 32 LPIQVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTMNVAGGPARFVQAPP 81
          L +Q LQR PVPPSG NPC+ IPG+S GRCTL  MNVAGG    V  PP
Sbjct: 43 LIVQSLQRGPVPPSGGNPCTNIPGRSRGRCTLSEMNVAGGGGGMVAHPP 91

BLAST of Cp4.1LG05g01370 vs. NCBI nr
Match: gi|763759247|gb|KJB26578.1| (hypothetical protein B456_004G248500 [Gossypium raimondii])

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 1

Query: 32 LPIQVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTMNVAGGPA--RFV-QAPPAIHD 85
          L IQ+L R PVPPS  NPC+ IPG+S+GRCTL  MNVAGG +  R V  APP   D
Sbjct: 41 LTIQLLPRGPVPPSAGNPCTNIPGRSHGRCTLTEMNVAGGGSHNRVVHHAPPTFSD 96

BLAST of Cp4.1LG05g01370 vs. NCBI nr
Match: gi|224123488|ref|XP_002319090.1| (hypothetical protein POPTR_0013s04080g [Populus trichocarpa])

HSP 1 Score: 61.6 bits (148), Expect = 8.5e-07
Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 1

Query: 12  AARVMSGDKWMKAKQDIAFVLPIQVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTMNVAGG 71
           AAR + G++W +       V  IQ LQR PVPPSG +PC+ IPG+ +G+C+L  MN AG 
Sbjct: 29  AARPLEGERWSEK-----IVGNIQSLQRGPVPPSGGSPCTHIPGRGSGKCSLGEMNFAGH 88

Query: 72  PARFVQAPPAIHDPAPIASAAQSS 96
                 APPA  D      AA S+
Sbjct: 89  TVAL--APPAFPDAIMNFGAAAST 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LCX8_CUCSA4.3e-1867.03Uncharacterized protein OS=Cucumis sativus GN=Csa_3G391390 PE=4 SV=1[more]
A0A061F0W9_THECC4.8e-0965.31Uncharacterized protein OS=Theobroma cacao GN=TCM_026263 PE=4 SV=1[more]
A0A0D2PI32_GOSRA9.1e-0860.71Uncharacterized protein OS=Gossypium raimondii GN=B456_004G248500 PE=4 SV=1[more]
B9I5L3_POPTR5.9e-0744.05Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04080g PE=4 SV=1[more]
I1JRQ4_SOYBN1.3e-0639.13Uncharacterized protein OS=Glycine max GN=GLYMA_03G248900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659123868|ref|XP_008461883.1|3.3e-1968.13PREDICTED: uncharacterized protein LOC103500372 [Cucumis melo][more]
gi|700202788|gb|KGN57921.1|6.2e-1867.03hypothetical protein Csa_3G391390 [Cucumis sativus][more]
gi|590642366|ref|XP_007030498.1|6.9e-0965.31Uncharacterized protein TCM_026263 [Theobroma cacao][more]
gi|763759247|gb|KJB26578.1|1.3e-0760.71hypothetical protein B456_004G248500 [Gossypium raimondii][more]
gi|224123488|ref|XP_002319090.1|8.5e-0744.05hypothetical protein POPTR_0013s04080g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g01370.1Cp4.1LG05g01370.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 1..81
score: 6.3

The following gene(s) are paralogous to this gene:

None