Cla006005 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006005
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 2169407 .. 2169763 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATCTCTCAAAGGGATTGCTTTGTTTTCAATGTGTTGTTATTGTTCACCATTTTATTAGCTTCTTCACAAGTTATGGAGGCAAGTAGGGTTATGAAAGGAGAGAAATGGATTGAGAAGAAGGAGAAGGAAGATCATAACATTCATAGGCTTTTTGTGTTACCTATTATTCAAGTCTTGCAGCGTGCCCCGGTGCCACCGTCCGGTCGCAACCCGTGCACCAACATTCCCGGCCAAAGCAACGGTCGATGCACTCTCCAGACGATGAATGTTGCCGGTGGTCATTTCGTCCATGCACCGCCTGCTATCCCCGACTCCGCTCTCGTCCTTGACTTTGCTGCTCAAAGCTCTTGA

mRNA sequence

ATGGGTATCTCTCAAAGGGATTGCTTTGTTTTCAATGTGTTGTTATTGTTCACCATTTTATTAGCTTCTTCACAAGTTATGGAGGCAAGTAGGGTTATGAAAGGAGAGAAATGGATTGAGAAGAAGGAGAAGGAAGATCATAACATTCATAGGCTTTTTGTGTTACCTATTATTCAAGTCTTGCAGCGTGCCCCGGTGCCACCGTCCGGTCGCAACCCGTGCACCAACATTCCCGGCCAAAGCAACGGTCGATGCACTCTCCAGACGATGAATGTTGCCGGTGGTCATTTCGTCCATGCACCGCCTGCTATCCCCGACTCCGCTCTCGTCCTTGACTTTGCTGCTCAAAGCTCTTGA

Coding sequence (CDS)

ATGGGTATCTCTCAAAGGGATTGCTTTGTTTTCAATGTGTTGTTATTGTTCACCATTTTATTAGCTTCTTCACAAGTTATGGAGGCAAGTAGGGTTATGAAAGGAGAGAAATGGATTGAGAAGAAGGAGAAGGAAGATCATAACATTCATAGGCTTTTTGTGTTACCTATTATTCAAGTCTTGCAGCGTGCCCCGGTGCCACCGTCCGGTCGCAACCCGTGCACCAACATTCCCGGCCAAAGCAACGGTCGATGCACTCTCCAGACGATGAATGTTGCCGGTGGTCATTTCGTCCATGCACCGCCTGCTATCCCCGACTCCGCTCTCGTCCTTGACTTTGCTGCTCAAAGCTCTTGA

Protein sequence

MGISQRDCFVFNVLLLFTILLASSQVMEASRVMKGEKWIEKKEKEDHNIHRLFVLPIIQVLQRAPVPPSGRNPCTNIPGQSNGRCTLQTMNVAGGHFVHAPPAIPDSALVLDFAAQSS

Homology

[Close]

BLAST of Cla006005 vs. TrEMBL
Match: A0A0A0LCX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G391390 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.0e-37
Identity = 89/119 (74.79%), Postives = 97/119 (81.51%), Query Frame = 1


Query: 1   MGISQRDCFVFNVLLLFTILLASSQVMEASRVMKGEKWIEKKEKEDHNIHRLFVLPIIQV 60
           MGISQ+     NVLL F IL+ASSQVM  +RVMK EKW+ K+EK DH++   FVLPIIQV
Sbjct: 1   MGISQK-----NVLLFFIILVASSQVMVGARVMKVEKWM-KEEKNDHSV---FVLPIIQV 60

Query: 61  LQRAPVPPSGRNPCTNIPGQSNGRCTLQTMNVAGGHFVHA-PPAIPDSALVLDFAAQSS 119
           LQRAPVPPSGRNPCT IPGQSNGRCTLQTMNVAG HFVHA PP IPDSAL +D  AQSS
Sbjct: 61  LQRAPVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 110

[Close]

BLAST of Cla006005 vs. TrEMBL
Match: B9I5L3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04080g PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 1


Query: 4   SQRDCFVFNVLLLFTILLAS-SQVMEASRVMKGEKWIEKKEKEDHNIHRLFVLPIIQVLQ 63
           SQR      V++  TI+L S SQ + A+R ++GE+W EK            ++  IQ LQ
Sbjct: 3   SQRRNQCLTVMIFVTIVLGSCSQQVLAARPLEGERWSEK------------IVGNIQSLQ 62

Query: 64  RAPVPPSGRNPCTNIPGQSNGRCTLQTMNVAGGHFVHAPPAIPDSALVLDFAAQSS 119
           R PVPPSG +PCT+IPG+ +G+C+L  MN AG     APPA PD+  +++F A +S
Sbjct: 63  RGPVPPSGGSPCTHIPGRGSGKCSLGEMNFAGHTVALAPPAFPDA--IMNFGAAAS 104

[Close]

BLAST of Cla006005 vs. TrEMBL
Match: A0A061F0W9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_026263 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-10
Identity = 35/50 (70.00%), Postives = 37/50 (74.00%), Query Frame = 1


Query: 57  IIQVLQRAPVPPSGRNPCTNIPGQSNGRCTLQTMNVA---GGHFVHAPPA 104
           I+Q LQR PVPPSG NPCTNIPG+S GRCTL  MNVA   GG   H PPA
Sbjct: 44  IVQSLQRGPVPPSGGNPCTNIPGRSRGRCTLSEMNVAGGGGGMVAHPPPA 93

[Close]

BLAST of Cla006005 vs. TrEMBL
Match: U7DW47_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_1174s00200g PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-10
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 1


Query: 1   MGISQRDCFVFNVLLLFTILLASSQVMEASRVMKGEKWIEKKEKEDHNIHRLFVLPIIQV 60
           MG  +++  +  ++ +  +    S  + A+R ++GE+W+++             L  IQ 
Sbjct: 1   MGSQRKNRCLTMIIFVAIVFGPCSHQILAARPIEGEQWLKQN------------LGNIQS 60

Query: 61  LQRAPVPPSGRNPCTNIPGQSNGRCTLQTMNVAGGHFVHAPPAIPDSALVLDFAAQS 118
           LQRAPVPPS  + CT+ PG+ +G C L  MN AG    HAPPA PD+  ++ FAA S
Sbjct: 61  LQRAPVPPSRGSSCTHTPGRGSGHCPLGEMNFAGHIVAHAPPAFPDA--IVKFAAAS 103

[Close]

BLAST of Cla006005 vs. TrEMBL
Match: A0A0D2PI32_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G248500 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.4e-10
Identity = 46/102 (45.10%), Postives = 55/102 (53.92%), Query Frame = 1


Query: 11  FNVLLLFTILLASSQVMEASRVMKGEKWIEKKEKEDHNIHRLFVLPIIQVLQRAPVPPSG 70
           F V ++F ILL    ++    V+     I   E+E   I        IQ+L R PVPPS 
Sbjct: 4   FKVTVIFAILL----MLSFHHVLA----IRTLEEEQAKIFIFNKNLTIQLLPRGPVPPSA 63

Query: 71  RNPCTNIPGQSNGRCTLQTMNVAGGH-----FVHAPPAIPDS 108
            NPCTNIPG+S+GRCTL  MNVAGG        HAPP   DS
Sbjct: 64  GNPCTNIPGRSHGRCTLTEMNVAGGGSHNRVVHHAPPTFSDS 97

[Close]

BLAST of Cla006005 vs. NCBI nr
Match: gi|700202788|gb|KGN57921.1| (hypothetical protein Csa_3G391390 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 5.7e-37
Identity = 89/119 (74.79%), Postives = 97/119 (81.51%), Query Frame = 1


Query: 1   MGISQRDCFVFNVLLLFTILLASSQVMEASRVMKGEKWIEKKEKEDHNIHRLFVLPIIQV 60
           MGISQ+     NVLL F IL+ASSQVM  +RVMK EKW+ K+EK DH++   FVLPIIQV
Sbjct: 1   MGISQK-----NVLLFFIILVASSQVMVGARVMKVEKWM-KEEKNDHSV---FVLPIIQV 60

Query: 61  LQRAPVPPSGRNPCTNIPGQSNGRCTLQTMNVAGGHFVHA-PPAIPDSALVLDFAAQSS 119
           LQRAPVPPSGRNPCT IPGQSNGRCTLQTMNVAG HFVHA PP IPDSAL +D  AQSS
Sbjct: 61  LQRAPVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 110

[Close]

BLAST of Cla006005 vs. NCBI nr
Match: gi|659123868|ref|XP_008461883.1| (PREDICTED: uncharacterized protein LOC103500372 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-33
Identity = 84/119 (70.59%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 1   MGISQRDCFVFNVLLLFTILLASSQVMEASRVMKGEKWIEKKEKEDHNIHRLFVLPIIQV 60
           MGIS++     NVL++F  L+ASSQVM  +RVMKGEKW+ K EK DH   R F+LPIIQV
Sbjct: 1   MGISRK-----NVLVVFITLVASSQVMVGARVMKGEKWM-KDEKTDH---RNFLLPIIQV 60

Query: 61  LQRAPVPPSGRNPCTNIPGQSNGRCTLQTMNVAGGHFVHA-PPAIPDSALVLDFAAQSS 119
           LQRAPVPPSGRNPCT IPGQS+GRCTLQTMNVAG HFVHA PPAIPDS   +   AQSS
Sbjct: 61  LQRAPVPPSGRNPCTGIPGQSSGRCTLQTMNVAGHHFVHARPPAIPDSGPDVASTAQSS 110

[Close]

BLAST of Cla006005 vs. NCBI nr
Match: gi|224123488|ref|XP_002319090.1| (hypothetical protein POPTR_0013s04080g [Populus trichocarpa])

HSP 1 Score: 86.3 bits (212), Expect = 4.0e-14
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 1


Query: 4   SQRDCFVFNVLLLFTILLAS-SQVMEASRVMKGEKWIEKKEKEDHNIHRLFVLPIIQVLQ 63
           SQR      V++  TI+L S SQ + A+R ++GE+W EK            ++  IQ LQ
Sbjct: 3   SQRRNQCLTVMIFVTIVLGSCSQQVLAARPLEGERWSEK------------IVGNIQSLQ 62

Query: 64  RAPVPPSGRNPCTNIPGQSNGRCTLQTMNVAGGHFVHAPPAIPDSALVLDFAAQSS 119
           R PVPPSG +PCT+IPG+ +G+C+L  MN AG     APPA PD+  +++F A +S
Sbjct: 63  RGPVPPSGGSPCTHIPGRGSGKCSLGEMNFAGHTVALAPPAFPDA--IMNFGAAAS 104

[Close]

BLAST of Cla006005 vs. NCBI nr
Match: gi|590642366|ref|XP_007030498.1| (Uncharacterized protein TCM_026263 [Theobroma cacao])

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-10
Identity = 35/50 (70.00%), Postives = 37/50 (74.00%), Query Frame = 1


Query: 57  IIQVLQRAPVPPSGRNPCTNIPGQSNGRCTLQTMNVA---GGHFVHAPPA 104
           I+Q LQR PVPPSG NPCTNIPG+S GRCTL  MNVA   GG   H PPA
Sbjct: 44  IVQSLQRGPVPPSGGNPCTNIPGRSRGRCTLSEMNVAGGGGGMVAHPPPA 93

[Close]

BLAST of Cla006005 vs. NCBI nr
Match: gi|566253991|ref|XP_006387358.1| (hypothetical protein POPTR_1174s00200g [Populus trichocarpa])

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-10
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 1


Query: 1   MGISQRDCFVFNVLLLFTILLASSQVMEASRVMKGEKWIEKKEKEDHNIHRLFVLPIIQV 60
           MG  +++  +  ++ +  +    S  + A+R ++GE+W+++             L  IQ 
Sbjct: 1   MGSQRKNRCLTMIIFVAIVFGPCSHQILAARPIEGEQWLKQN------------LGNIQS 60

Query: 61  LQRAPVPPSGRNPCTNIPGQSNGRCTLQTMNVAGGHFVHAPPAIPDSALVLDFAAQS 118
           LQRAPVPPS  + CT+ PG+ +G C L  MN AG    HAPPA PD+  ++ FAA S
Sbjct: 61  LQRAPVPPSRGSSCTHTPGRGSGHCPLGEMNFAGHIVAHAPPAFPDA--IVKFAAAS 103

The following BLAST results are available for this feature:

BLAST of Cla006005 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCX8_CUCSA	4.0e-37	74.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G391390 PE=4 SV=1	[more]
B9I5L3_POPTR	2.8e-14	43.10	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04080g PE=4 SV=1	[more]
A0A061F0W9_THECC	1.9e-10	70.00	Uncharacterized protein OS=Theobroma cacao GN=TCM_026263 PE=4 SV=1	[more]
U7DW47_POPTR	3.2e-10	35.90	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_1174s00200g PE=4 SV=1	[more]
A0A0D2PI32_GOSRA	5.4e-10	45.10	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G248500 PE=4 SV=1	[more]

BLAST of Cla006005 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202788\|gb\|KGN57921.1\|	5.7e-37	74.79	hypothetical protein Csa_3G391390 [Cucumis sativus]	[more]
gi\|659123868\|ref\|XP_008461883.1\|	1.3e-33	70.59	PREDICTED: uncharacterized protein LOC103500372 [Cucumis melo]	[more]
gi\|224123488\|ref\|XP_002319090.1\|	4.0e-14	43.10	hypothetical protein POPTR_0013s04080g [Populus trichocarpa]	[more]
gi\|590642366\|ref\|XP_007030498.1\|	2.7e-10	70.00	Uncharacterized protein TCM_026263 [Theobroma cacao]	[more]
gi\|566253991\|ref\|XP_006387358.1\|	4.6e-10	35.90	hypothetical protein POPTR_1174s00200g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006005	Cla006005.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33592	FAMILY NOT NAMED	coord: 4..118 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006005	Cla97C07G129100	Watermelon (97103) v2	wmwmbB175
Cla006005	ClCG07G000800	Watermelon (Charleston Gray)	wcgwmB373
Cla006005	CmaCh02G017620	Cucurbita maxima (Rimu)	cmawmB558
Cla006005	Lsi05G009920	Bottle gourd (USVL1VR-Ls)	lsiwmB356
Cla006005	Cp4.1LG05g01370	Cucurbita pepo (Zucchini)	cpewmB700

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006005	Melon (DHL92) v3.6.1	medwmB401
Cla006005	Melon (DHL92) v3.6.1	medwmB444
Cla006005	Silver-seed gourd	carwmB0750
Cla006005	Silver-seed gourd	carwmB0778
Cla006005	Silver-seed gourd	carwmB0960
Cla006005	Cucumber (Chinese Long) v3	cucwmB130
Cla006005	Cucumber (Chinese Long) v3	cucwmB227
Cla006005	Watermelon (97103) v2	wmwmbB161
Cla006005	Watermelon (97103) v2	wmwmbB165
Cla006005	Wax gourd	wgowmB265
Cla006005	Watermelon (97103) v1	wmwmB099
Cla006005	Watermelon (97103) v1	wmwmB116
Cla006005	Cucumber (Gy14) v1	cgywmB475
Cla006005	Cucurbita maxima (Rimu)	cmawmB236
Cla006005	Cucurbita maxima (Rimu)	cmawmB491
Cla006005	Cucurbita maxima (Rimu)	cmawmB866
Cla006005	Cucurbita moschata (Rifu)	cmowmB223
Cla006005	Cucurbita moschata (Rifu)	cmowmB339
Cla006005	Cucurbita moschata (Rifu)	cmowmB485
Cla006005	Cucurbita moschata (Rifu)	cmowmB551
Cla006005	Cucurbita moschata (Rifu)	cmowmB853
Cla006005	Melon (DHL92) v3.5.1	mewmB410
Cla006005	Melon (DHL92) v3.5.1	mewmB459
Cla006005	Watermelon (Charleston Gray)	wcgwmB324
Cla006005	Cucumber (Chinese Long) v2	cuwmB116
Cla006005	Cucumber (Chinese Long) v2	cuwmB221
Cla006005	Cucurbita pepo (Zucchini)	cpewmB257
Cla006005	Cucurbita pepo (Zucchini)	cpewmB326
Cla006005	Cucurbita pepo (Zucchini)	cpewmB605
Cla006005	Cucurbita pepo (Zucchini)	cpewmB841
Cla006005	Bottle gourd (USVL1VR-Ls)	lsiwmB013
Cla006005	Bottle gourd (USVL1VR-Ls)	lsiwmB359
Cla006005	Cucumber (Gy14) v2	cgybwmB114
Cla006005	Cucumber (Gy14) v2	cgybwmB207