Cp4.1LG04g14590 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g14590
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 11575735 .. 11577988 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGTTAACCAATTTTATTTTATTTTATTATATATATATATATATATATATATATATATATATATATATATATATATATTTTGTGAAATATGTATAGCCTTATACCATACATCCTCATGGCTCGTGACTGCACATTACATCATAGCAGCACAAAAAGAAATGAAGGTAGAAACCCGATTGGGTGTTCCTGCACACCTAACATCCTGCAAGAAAATGCCTATGACTCGGAAACAAAGTAAGAGACTGAGCAACACAAAAGCTATTATAATACGCCTGACAAACTCTTTCATTTGAACTTTCAAGTCTCAAGTTAAGGTGTTAGCGCTTTAGAAAGATTGCAAGGCGTTGAGTGTTAACTAAGAATCTCAAAAGGGCTTTTGAAACTTACTCTACTACTGGGGTGTTAGGCTGGCAGGGTGCCCCGATTCGAAAGCTTGAAGGATAGGCCAACAATATACAAATTCATTTTCCAAATATGTTTCACGGAATAATTCTAGAAAAACTAAATCCAAAAGTATTTAGAATGTTTTGTTCTACTTTCCACGACTATGCCTACGCCTACCATTAAGGGAATGGGATTGACTCAAATGGCTAAAACAAAACAGATGGCATTGAAGCTTTGCAGTATAATCTATAGGCTAAAACAAACCAATTGGTTGGCCTATAAGTCAAAGTTGGCAACCTTCTGCGTCCAATAGCTTCCTCGAGGAGAAGCATTCTTAATAAAACGAGCTTAAATGCACAGTAAATCGCATCCCATTGAAGCAATTATCATCGAGAAATGAAGACATTCAAACAAGGTATGATATGCAGGGAATTTGATCTGAATGCCTCACTGCAGACAGTACACATTAGTCTTTCCATGGTTAAATATGTAAAACAGCAATAGTCTGAGGGGTGGTGGACACAAGGCCAAGCTTGTTCAACAAAAACATTATGAACCCATTTGCAGAGGGAAACGAAAACTGTGAGGCTGACGGGAATATGTAACGTCCAAAACGGACAATATCAGCTAGCAGTAGACTTAGACGGTTACAGATGGTATCAAAGCCAGACACCGGGCGGTGTACCAATGAGGACGCTGGCCCCCCAAGAGAGGTGTATTGATAGATCCACCTCGATTGGAGAAGGGAACCAAATCAGTTGGAAAGGGGAACAAAACATTTCTAATAAGGGTGTGGAAACCTCTCACTAGTATACACGTTTTAAAAGCGTGAAGATGACAGTGACACAGAACGGGCCAAATCAAATAATATCTACTAGCAGTAGCCTTGGACTATTGGACTATTACACCCTTGGCAAGAGAAAATTTATAAATGAAGAACCAACTACATTTCAAAAAGAACATGTTTATCAGTTTCAGTTTATGAAATATGAACAAGCAGTGCCCTTCATTTCACATTCCGTAGATAGATACTATGAACAGAATAAGGGAAAATTAAAAACAATGCAGTCTTCTTAAGTTAAAATTTCCTAAACAAACCTGGAACTTCGATCCACCAATGTCCAATATAATGGCATGGCATGTCAGAGCTGCATTGCCCCGCATTGTTTCAGCTCAGGCCAGAACACCAAACAGGGCTAAGACAAAGAAAAAACCTCTTATTTCTCTGCAGATCATATAATGAAGGGTTGGAGGGGCGGAGGCAAAAGAAAACAGAGGACATTATGAAAAAGAATTTATCAAGTTTCAGAACAAACATTATTATCATAATCAAAATGCTCTACGCATTGTTTTTTTTGGCTTCTTGACAAAACTCAATCGAATTTGCTTCAGTCGTCTCCTCTTCCTTGCCATTTTCTCTGGCAACGTCTCCCTCTTCTTCTCAACCTTCTTTACCTTTGGCTTCTTTGCATACCTTGGCTCAACCTGATAAGCTTTTGGAGTGACTGGAACTCCCCGTTTCTGAGCTTCATTAAAGAGTGAATTTGCTCTGTCCAGACGATTATGGGCACAGAGTTTTCCCATCAATAGATCATATGTCTTAATGCCAGGCTCACACCCATCCTTCTTCATCTTCGCAAAAACAATCAGGGCATGATCAATCCTCTCGATCCCACACAAAATCTTCAGAAACTCATAATAAGCCTTCTTATCAAGTGCATCAGCATATCCCGCAGACCTCATCCTGTCAATCATTTCATCCCCTTCTCCCGTCCTGGCCGCTTGATACAAACTTTTGATCAAAATAAGGAACGTTTCAGCGTTAGGATGACATCCCCACTCCCCCATTCGATGAAACAAATTTAG

mRNA sequence

ATGCTAGGAATGGGATTGACTCAAATGGCTAAAACAAAACAGATGGCATTGAAGCTTTGCATAAATCGCATCCCATTGAAGCAATTATCATCGAGAAATGAAGACATTCAAACAAGGCTCACACCCATCCTTCTTCATCTTCGCAAAAACAATCAGGGCATGATCAATCCTCTCGATCCCACACAAAATCTTCAGAAACTCATAATAAGCCTTCTTATCAAGTGCATCAGCATATCCCGCAGACCTCATCCTGTCAATCATTTCATCCCCTTCTCCCGTCCTGGCCGCTTGATACAAACTTTTGATCAAAATAAGGAACGTTTCAGCGTTAGGATGACATCCCCACTCCCCCATTCGATGAAACAAATTTAG

Coding sequence (CDS)

ATGCTAGGAATGGGATTGACTCAAATGGCTAAAACAAAACAGATGGCATTGAAGCTTTGCATAAATCGCATCCCATTGAAGCAATTATCATCGAGAAATGAAGACATTCAAACAAGGCTCACACCCATCCTTCTTCATCTTCGCAAAAACAATCAGGGCATGATCAATCCTCTCGATCCCACACAAAATCTTCAGAAACTCATAATAAGCCTTCTTATCAAGTGCATCAGCATATCCCGCAGACCTCATCCTGTCAATCATTTCATCCCCTTCTCCCGTCCTGGCCGCTTGATACAAACTTTTGATCAAAATAAGGAACGTTTCAGCGTTAGGATGACATCCCCACTCCCCCATTCGATGAAACAAATTTAG

Protein sequence

MLGMGLTQMAKTKQMALKLCINRIPLKQLSSRNEDIQTRLTPILLHLRKNNQGMINPLDPTQNLQKLIISLLIKCISISRRPHPVNHFIPFSRPGRLIQTFDQNKERFSVRMTSPLPHSMKQI
Homology
[Close]
BLAST of Cp4.1LG04g14590 vs. TrEMBL
Match: A0A0A0LRY1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015730 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.5e-20
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1 

Query: 54  MINPLDPTQNLQKLIISLLIKCISISRRPHPVNHFIPFSRPGRLIQTFDQNKERFSVRMT 113
           MIN L+PTQN+ KLIISLLIKCISIS R HPVNHFIP  R  RLIQT +Q +ERFS+ MT
Sbjct: 1   MINSLNPTQNIHKLIISLLIKCISISDRLHPVNHFIPLPRSCRLIQTSNQYEERFSIGMT 60

Query: 114 SPLPHSMKQI 124
           SP PHSMKQI
Sbjct: 61  SPFPHSMKQI 70

[Close]
BLAST of Cp4.1LG04g14590 vs. NCBI nr
Match: gi|700208683|gb|KGN63779.1| (hypothetical protein Csa_1G015730 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 5.1e-20
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1 

Query: 54  MINPLDPTQNLQKLIISLLIKCISISRRPHPVNHFIPFSRPGRLIQTFDQNKERFSVRMT 113
           MIN L+PTQN+ KLIISLLIKCISIS R HPVNHFIP  R  RLIQT +Q +ERFS+ MT
Sbjct: 1   MINSLNPTQNIHKLIISLLIKCISISDRLHPVNHFIPLPRSCRLIQTSNQYEERFSIGMT 60

Query: 114 SPLPHSMKQI 124
           SP PHSMKQI
Sbjct: 61  SPFPHSMKQI 70

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g14590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g14590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRY1_CUCSA3.5e-2075.71Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015730 PE=4 SV=1[more]
BLAST of Cp4.1LG04g14590 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g14590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208683|gb|KGN63779.1|5.1e-2075.71hypothetical protein Csa_1G015730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g14590.1Cp4.1LG04g14590.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g14590Csa1G015730Cucumber (Chinese Long) v2cpecuB638
Cp4.1LG04g14590CSPI01G03380Wild cucumber (PI 183967)cpecpiB642
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g14590Wax gourdcpewgoB0867
Cp4.1LG04g14590Wax gourdcpewgoB0874
Cp4.1LG04g14590Wax gourdcpewgoB0884
Cp4.1LG04g14590Wax gourdcpewgoB0895
Cp4.1LG04g14590Cucurbita pepo (Zucchini)cpecpeB053
Cp4.1LG04g14590Cucurbita pepo (Zucchini)cpecpeB054
Cp4.1LG04g14590Cucurbita pepo (Zucchini)cpecpeB364
Cp4.1LG04g14590Cucurbita pepo (Zucchini)cpecpeB442
Cp4.1LG04g14590Cucumber (Gy14) v1cgycpeB0265
Cp4.1LG04g14590Cucumber (Gy14) v1cgycpeB0564
Cp4.1LG04g14590Cucumber (Gy14) v1cgycpeB0561
Cp4.1LG04g14590Cucumber (Gy14) v1cgycpeB0761
Cp4.1LG04g14590Cucurbita maxima (Rimu)cmacpeB087
Cp4.1LG04g14590Cucurbita maxima (Rimu)cmacpeB153
Cp4.1LG04g14590Cucurbita maxima (Rimu)cmacpeB246
Cp4.1LG04g14590Cucurbita maxima (Rimu)cmacpeB452
Cp4.1LG04g14590Cucurbita moschata (Rifu)cmocpeB063
Cp4.1LG04g14590Cucurbita moschata (Rifu)cmocpeB129
Cp4.1LG04g14590Cucurbita moschata (Rifu)cmocpeB212
Cp4.1LG04g14590Cucurbita moschata (Rifu)cmocpeB413
Cp4.1LG04g14590Wild cucumber (PI 183967)cpecpiB658
Cp4.1LG04g14590Wild cucumber (PI 183967)cpecpiB684
Cp4.1LG04g14590Cucumber (Chinese Long) v2cpecuB655
Cp4.1LG04g14590Cucumber (Chinese Long) v2cpecuB680
Cp4.1LG04g14590Bottle gourd (USVL1VR-Ls)cpelsiB542
Cp4.1LG04g14590Bottle gourd (USVL1VR-Ls)cpelsiB556
Cp4.1LG04g14590Watermelon (Charleston Gray)cpewcgB610
Cp4.1LG04g14590Watermelon (Charleston Gray)cpewcgB607
Cp4.1LG04g14590Watermelon (Charleston Gray)cpewcgB616
Cp4.1LG04g14590Watermelon (97103) v1cpewmB664
Cp4.1LG04g14590Watermelon (97103) v1cpewmB679
Cp4.1LG04g14590Melon (DHL92) v3.5.1cpemeB595
Cp4.1LG04g14590Melon (DHL92) v3.5.1cpemeB602
Cp4.1LG04g14590Melon (DHL92) v3.5.1cpemeB615
Cp4.1LG04g14590Cucumber (Gy14) v2cgybcpeB111
Cp4.1LG04g14590Cucumber (Gy14) v2cgybcpeB128
Cp4.1LG04g14590Cucumber (Gy14) v2cgybcpeB682
Cp4.1LG04g14590Melon (DHL92) v3.6.1cpemedB706
Cp4.1LG04g14590Melon (DHL92) v3.6.1cpemedB711
Cp4.1LG04g14590Melon (DHL92) v3.6.1cpemedB727
Cp4.1LG04g14590Silver-seed gourdcarcpeB0548
Cp4.1LG04g14590Silver-seed gourdcarcpeB0651
Cp4.1LG04g14590Silver-seed gourdcarcpeB0726
Cp4.1LG04g14590Silver-seed gourdcarcpeB0847
Cp4.1LG04g14590Cucumber (Chinese Long) v3cpecucB0798
Cp4.1LG04g14590Cucumber (Chinese Long) v3cpecucB0816
Cp4.1LG04g14590Cucumber (Chinese Long) v3cpecucB0852