Csa1G015730 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G015730
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 2111312 .. 2111716 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAATTCTCTCAATCCCACACAAAATATTCATAAACTCATAATAAGCCTTCTTATCAAGTGCATCTCCATATCCGACAGACTTCATCCTGTCAATCATTTCATCCCCCTCCCCCGTTCGTGCCGCTTGATACAAACTTCTAATCAATATGAGGAACGTTTCAGCATTGGGATGACATCCCCATTCCCCCATTCGATGAAACAAATTAACTGCATCAGTAGTTCTCCTAATCTTGCACAAATTATTGATCAGCACATTGAAAGTTTCGACATTTCGTGGAACCCCACGACAATCCATTTCCACCAGAATTTCCTCAGCTTCAGAATCAAGTCTAAACGGATCCTTTTTCCTACAAAGTTTGCAAACACAATCAAGCAAAGCATTATATGCGGTTGTCCCTAA

mRNA sequence

ATGATCAATTCTCTCAATCCCACACAAAATATTCATAAACTCATAATAAGCCTTCTTATCAAGTGCATCTCCATATCCGACAGACTTCATCCTGTCAATCATTTCATCCCCCTCCCCCGTTCGTGCCGCTTGATACAAACTTCTAATCAATATGAGGAACGTTTCAGCATTGGGATGACATCCCCATTCCCCCATTCGATGAAACAAATTAACTGCATCAGTAGTTCTCCTAATCTTGCACAAATTATTGATCAGCACATTGAAAGTTTCGACATTTCGTGGAACCCCACGACAATCCATTTCCACCAGAATTTCCTCAGCTTCAGAATCAAGTCTAAACGGATCCTTTTTCCTACAAAGTTTGCAAACACAATCAAGCAAAGCATTATATGCGGTTGTCCCTAA

Coding sequence (CDS)

ATGATCAATTCTCTCAATCCCACACAAAATATTCATAAACTCATAATAAGCCTTCTTATCAAGTGCATCTCCATATCCGACAGACTTCATCCTGTCAATCATTTCATCCCCCTCCCCCGTTCGTGCCGCTTGATACAAACTTCTAATCAATATGAGGAACGTTTCAGCATTGGGATGACATCCCCATTCCCCCATTCGATGAAACAAATTAACTGCATCAGTAGTTCTCCTAATCTTGCACAAATTATTGATCAGCACATTGAAAGTTTCGACATTTCGTGGAACCCCACGACAATCCATTTCCACCAGAATTTCCTCAGCTTCAGAATCAAGTCTAAACGGATCCTTTTTCCTACAAAGTTTGCAAACACAATCAAGCAAAGCATTATATGCGGTTGTCCCTAA

Protein sequence

MINSLNPTQNIHKLIISLLIKCISISDRLHPVNHFIPLPRSCRLIQTSNQYEERFSIGMTSPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTIHFHQNFLSFRIKSKRILFPTKFANTIKQSIICGCP*
Homology
[Close]
BLAST of Csa1G015730 vs. TrEMBL
Match: A0A0A0LRY1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015730 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.4e-72
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MINSLNPTQNIHKLIISLLIKCISISDRLHPVNHFIPLPRSCRLIQTSNQYEERFSIGMT 60
           MINSLNPTQNIHKLIISLLIKCISISDRLHPVNHFIPLPRSCRLIQTSNQYEERFSIGMT
Sbjct: 1   MINSLNPTQNIHKLIISLLIKCISISDRLHPVNHFIPLPRSCRLIQTSNQYEERFSIGMT 60

Query: 61  SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTIHFHQNFLSFRIKSKRILFPTK 120
           SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTIHFHQNFLSFRIKSKRILFPTK
Sbjct: 61  SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTIHFHQNFLSFRIKSKRILFPTK 120

Query: 121 FANTIKQSIICGCP 135
           FANTIKQSIICGCP
Sbjct: 121 FANTIKQSIICGCP 134

[Close]
BLAST of Csa1G015730 vs. NCBI nr
Match: gi|700208683|gb|KGN63779.1| (hypothetical protein Csa_1G015730 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 6.3e-72
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MINSLNPTQNIHKLIISLLIKCISISDRLHPVNHFIPLPRSCRLIQTSNQYEERFSIGMT 60
           MINSLNPTQNIHKLIISLLIKCISISDRLHPVNHFIPLPRSCRLIQTSNQYEERFSIGMT
Sbjct: 1   MINSLNPTQNIHKLIISLLIKCISISDRLHPVNHFIPLPRSCRLIQTSNQYEERFSIGMT 60

Query: 61  SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTIHFHQNFLSFRIKSKRILFPTK 120
           SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTIHFHQNFLSFRIKSKRILFPTK
Sbjct: 61  SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTIHFHQNFLSFRIKSKRILFPTK 120

Query: 121 FANTIKQSIICGCP 135
           FANTIKQSIICGCP
Sbjct: 121 FANTIKQSIICGCP 134

The following BLAST results are available for this feature:
BLAST of Csa1G015730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRY1_CUCSA4.4e-72100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015730 PE=4 SV=1[more]
BLAST of Csa1G015730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208683|gb|KGN63779.1|6.3e-72100.00hypothetical protein Csa_1G015730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU101487cucumber EST collection version 3.0transcribed_cluster
CU153171cucumber EST collection version 3.0transcribed_cluster
CU162444cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G015730.1Csa1G015730.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU101487CU101487transcribed_cluster
CU162444CU162444transcribed_cluster
CU153171CU153171transcribed_cluster