CSPI01G03380 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G03380
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 2124775 .. 2126955 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTGACCTGATGGCTGTCTGAAGATATCATTCCACAATTGGTCAGTTTTTCCATGGATAAGCCTGTAGTAAAACAACCATAATCGGCAGGATGGTCGACAAGACACAGAGCCAGACATAGTCAAATTTCAACAAGAACACTGTGAGTCATCATCACCAAGCGATAACTGATTAAAGCAAAACCAGCTATATTTGTAGAAGTACTAGTAACTTCCATGTTCTAACTTCTCGGCGTCAGTTAAACCAAATATGAACAAGAAGTACCTTCATTTTACTCTATGTGGATAGATATTATGGCATTAACAACAATGCAACACTTTTTCAAGGTACATTTTCCTAAACCAACCTGGAATTTTGATCCACCAAAAGTTTGACCTTGTTCCTTTTGTCCAATATAATGGAATGACATGTCAGAGTTGCCATTTTCCTGTATCAGTTTCAGCTAAACACAACAGGGTAAAATCAAAAACCTCTTATTTCTCTGCTGCTAATATTATAAAGGGAAGGAGGGGCAGATGCAAAAGAATGGATAAACAAACGTCAATTCATATGCATTAAATTCTAGTGCTACATTATCAAAATGCTCTACGCATTCCTCTTCTCGGTTTCTTAACAAAACTCAATCGAATTTGCTTCAGTCGTCGCCTTTTTCTCGCCATTTTCTCTGGCAATGTCTCCCTCTTCTTTGCAACCTTCTTATCCTTTGGCTTCTTTACATATTTCGGATCCACCTGATATGCTTTTGGAGTAACTGGTACACCCCGTTTTTGAGCTTCGTTAAAGAGTGAATTCGCTTTGTCCAAACGATTGTGGGCACAAAGTTTTCCCATCAATAGATCATATGTTTTAATCCCAGGTTCACACCCATCCTTCTTCATCTTTGCAAATACAACCAGTGCATGATCAATTCTCTCAATCCCACACAAAATATTCATAAACTCATAATAGGCCTTCTTATCAAGTGCATCTCCATATCCGACAGACTTCATCCTGTCAATCATTTCATCCCCCTCTCCCGTTCGTGCCGCTTGATACAAACTTCTAATCAATATGAGGAACGTTTCAGCATTGGGATGACATCCCCATTCCCCCATTCGATGAAACAAATTAACTGCATCAGTAGTTCTCCTAATCTTGCACAAATTATTGATCAGCACATTGAAAGTTTCGACATTTCGTGGAACCCCACGACAGTCCATTTCCACCAGAATTTCCTCAGCTTCAGAATCAAGTCTAAACGGATCCTTTTTCCTACAAAGTTTGCAAACACAATCAAGCAAAGCATTATATGCCGTTGTCCCTAACTCGAACCCGCCCCTGTACATCTCACCCGCTAGCCTTTTAGCTTCATCAAGTTTCTCATTCACACACCATCCTTTGATCAGAGTATCGCATATTGCTTCATCAGGGAAAAATTCATTAGCCAAGTCTTTGACCATCTTTTCAGCATGGCTCCCGAACCCATTTTCACAAAGCTTCTCCACTACCATCCTAAGCGACTCTTTATCCCTCTTAAGCCCGTAATTCTTCTCCATCGTCTCAAAAAATGAGATCAACTTAGTGGGTCGCCCAGCACGAGCGAACCGATGAATAGACGACTTAAGGGTTTTAGGCCCATTGATCCCTAAACCTTTCGCAAGGACTTCCTGAACCGCATTGAAATCTTTTCTACGACCAAAGAAATCAACAAAATACGATATAGTTTCATCAGTGTGATGAAAATCAGGATTCGATACTAACCATTCATTAAACCCTAACACTGTACGGCCAGCTTCCGATGAGAGATTGAGTGTATTACGAACCAACTCCGGATTCGGTTTAACATGCGAAAAGCTAAGTTGAAGACGCTGTGTAATGGGAAGAGGATCCGAATCAGGGTCTTTGAGAAGCTCAGATGCAAGTGATTGGGATGTTTGATCCACGTCATTGTTGACGGACTCGGAAGAGAACGAATGAGAAAGTGAGAGATACAAGGGAGAAGAAAACCTTAACGCCGCCTCATGATGTCGGAAATGGTGGAAGAGAGACGTCAAATTTCGATGTAAAAGAACCGTCCTAGCAGAATCTTTCAAGGAATTAGTAGAAGACGATGATAGAGATCGAAGAACTAAGGTTCGAAGTTGCAGATACGGTAATGGCGGCATGGTTGAGAGCTCTGAAAAATAAAAATGGAACTGAGCTC

mRNA sequence

ATGATCAATTCTCTCAATCCCACACAAAATATTCATAAACTCATAATAGGCCTTCTTATCAAGTGCATCTCCATATCCGACAGACTTCATCCTGTCAATCATTTCATCCCCCTCTCCCGTTCGTGCCGCTTGATACAAACTTCTAATCAATATGAGGAACGTTTCAGCATTGGGATGACATCCCCATTCCCCCATTCGATGAAACAAATTAACTGCATCAGTAGTTCTCCTAATCTTGCACAAATTATTGATCAGCACATTGAAAGTTTCGACATTTCGTGGAACCCCACGACAGTCCATTTCCACCAGAATTTCCTCAGCTTCAGAATCAAGTCTAAACGGATCCTTTTTCCTACAAAGTTTGCAAACACAATCAAGCAAAGCATTATATGCCGTTGTCCCTAA

Coding sequence (CDS)

ATGATCAATTCTCTCAATCCCACACAAAATATTCATAAACTCATAATAGGCCTTCTTATCAAGTGCATCTCCATATCCGACAGACTTCATCCTGTCAATCATTTCATCCCCCTCTCCCGTTCGTGCCGCTTGATACAAACTTCTAATCAATATGAGGAACGTTTCAGCATTGGGATGACATCCCCATTCCCCCATTCGATGAAACAAATTAACTGCATCAGTAGTTCTCCTAATCTTGCACAAATTATTGATCAGCACATTGAAAGTTTCGACATTTCGTGGAACCCCACGACAGTCCATTTCCACCAGAATTTCCTCAGCTTCAGAATCAAGTCTAAACGGATCCTTTTTCCTACAAAGTTTGCAAACACAATCAAGCAAAGCATTATATGCCGTTGTCCCTAA
Homology
[Close]
BLAST of CSPI01G03380 vs. TrEMBL
Match: A0A0A0LRY1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015730 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.5e-69
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 1 

Query: 1   MINSLNPTQNIHKLIIGLLIKCISISDRLHPVNHFIPLSRSCRLIQTSNQYEERFSIGMT 60
           MINSLNPTQNIHKLII LLIKCISISDRLHPVNHFIPL RSCRLIQTSNQYEERFSIGMT
Sbjct: 1   MINSLNPTQNIHKLIISLLIKCISISDRLHPVNHFIPLPRSCRLIQTSNQYEERFSIGMT 60

Query: 61  SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTVHFHQNFLSFRIKSKRILFPTK 120
           SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTT+HFHQNFLSFRIKSKRILFPTK
Sbjct: 61  SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTIHFHQNFLSFRIKSKRILFPTK 120

Query: 121 FANTIKQSIICRCP 135
           FANTIKQSIIC CP
Sbjct: 121 FANTIKQSIICGCP 134

[Close]
BLAST of CSPI01G03380 vs. NCBI nr
Match: gi|700208683|gb|KGN63779.1| (hypothetical protein Csa_1G015730 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 2.2e-69
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 1 

Query: 1   MINSLNPTQNIHKLIIGLLIKCISISDRLHPVNHFIPLSRSCRLIQTSNQYEERFSIGMT 60
           MINSLNPTQNIHKLII LLIKCISISDRLHPVNHFIPL RSCRLIQTSNQYEERFSIGMT
Sbjct: 1   MINSLNPTQNIHKLIISLLIKCISISDRLHPVNHFIPLPRSCRLIQTSNQYEERFSIGMT 60

Query: 61  SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTVHFHQNFLSFRIKSKRILFPTK 120
           SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTT+HFHQNFLSFRIKSKRILFPTK
Sbjct: 61  SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTIHFHQNFLSFRIKSKRILFPTK 120

Query: 121 FANTIKQSIICRCP 135
           FANTIKQSIIC CP
Sbjct: 121 FANTIKQSIICGCP 134

The following BLAST results are available for this feature:
BLAST of CSPI01G03380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G03380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRY1_CUCSA1.5e-6997.01Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015730 PE=4 SV=1[more]
BLAST of CSPI01G03380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G03380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208683|gb|KGN63779.1|2.2e-6997.01hypothetical protein Csa_1G015730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G03380.1CSPI01G03380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G03380Cp4.1LG04g14590Cucurbita pepo (Zucchini)cpecpiB642
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G03380Wax gourdcpiwgoB082
CSPI01G03380Wild cucumber (PI 183967)cpicpiB001
CSPI01G03380Cucumber (Gy14) v1cgycpiB310
CSPI01G03380Cucumber (Gy14) v1cgycpiB428
CSPI01G03380Cucurbita maxima (Rimu)cmacpiB052
CSPI01G03380Cucurbita maxima (Rimu)cmacpiB086
CSPI01G03380Cucurbita maxima (Rimu)cmacpiB101
CSPI01G03380Cucurbita maxima (Rimu)cmacpiB223
CSPI01G03380Cucurbita maxima (Rimu)cmacpiB397
CSPI01G03380Cucurbita maxima (Rimu)cmacpiB695
CSPI01G03380Cucurbita moschata (Rifu)cmocpiB043
CSPI01G03380Cucurbita moschata (Rifu)cmocpiB079
CSPI01G03380Cucurbita moschata (Rifu)cmocpiB093
CSPI01G03380Cucurbita moschata (Rifu)cmocpiB388
CSPI01G03380Cucumber (Chinese Long) v2cpicuB000
CSPI01G03380Cucumber (Chinese Long) v2cpicuB006
CSPI01G03380Melon (DHL92) v3.5.1cpimeB006
CSPI01G03380Melon (DHL92) v3.5.1cpimeB046
CSPI01G03380Watermelon (Charleston Gray)cpiwcgB061
CSPI01G03380Watermelon (Charleston Gray)cpiwcgB074
CSPI01G03380Watermelon (97103) v1cpiwmB068
CSPI01G03380Watermelon (97103) v1cpiwmB089
CSPI01G03380Cucurbita pepo (Zucchini)cpecpiB029
CSPI01G03380Cucurbita pepo (Zucchini)cpecpiB353
CSPI01G03380Cucurbita pepo (Zucchini)cpecpiB381
CSPI01G03380Cucurbita pepo (Zucchini)cpecpiB509
CSPI01G03380Bottle gourd (USVL1VR-Ls)cpilsiB025
CSPI01G03380Bottle gourd (USVL1VR-Ls)cpilsiB062
CSPI01G03380Melon (DHL92) v3.6.1cpimedB040
CSPI01G03380Cucumber (Gy14) v2cgybcpiB001
CSPI01G03380Cucumber (Gy14) v2cgybcpiB005
CSPI01G03380Silver-seed gourdcarcpiB0419
CSPI01G03380Silver-seed gourdcarcpiB0497
CSPI01G03380Silver-seed gourdcarcpiB0500
CSPI01G03380Silver-seed gourdcarcpiB0550
CSPI01G03380Silver-seed gourdcarcpiB0626
CSPI01G03380Silver-seed gourdcarcpiB0628
CSPI01G03380Cucumber (Chinese Long) v3cpicucB001
CSPI01G03380Cucumber (Chinese Long) v3cpicucB004
CSPI01G03380Watermelon (97103) v2cpiwmbB057
CSPI01G03380Watermelon (97103) v2cpiwmbB071