Cp4.1LG04g08240 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g08240
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	embryo defective 1273
Location	Cp4.1LG04 : 3251932 .. 3255524 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGGGGAACCGGCAGCGGATTTCGGTCCCGCCATCTTAAACCCTTTTATCCGATTCAGGTTTTCGTTTCGCTTCGAGTTCGAGCTTGTTCCTCTCACAAATTTTCAGGTTTCTTTTGGGTTATGGTGTATCCGTGAACAAACCCTTCTTCCAAAACTGTGTTTCGTCCCTTAACAGCTTCAATTGACGCCCATCCATGGCGACCCACCTTCAAATTTCCGCTAAAATGGCCCTTCACGCCCCTGTTCTTCTAGCGCCCAGAGTAAGTTCGATCACCCTTTCTTCTATTTCTCTTTTTGAAGTATAAGGCTGAGTTAATGGGTGGGATTTTGGGCGCTCGGTTTCTAGCTTTTGAGAATGCATTTGTTTTGTTTCTCAATGTGGATGAAATTTGTTGGTAATTGGAAAATCATGTTGGTTAAATTGGTGGAACTACCATCCTGTGAATTTGTGGGTGATGTTGATTAATTGGAACATGCTATTTGATGGTAAATTCTGTTGCTGTGATGGCTGAATGCCTCTACATTAATGGGTATGGGTATAAACTTATCTGTTTTAGCCTCTCATAGCATTGAAAGAAGCGAGGAGCTATTTAAGAGGGAAGAGTATGCAAGACTGTAGTTATCTCGGGGTGTATATTGTTGTAACATAAGCGGAAACAAGATCAATTGCACTTTCACACACACGAACATAAATGAACAAAGAGACACAATGATTTACGTGGTTCGGAGAGAAGAAATTCTCCTACATCCACGGATGGTAGGCAATTACTATAATCAAAGTGTTTACAAATGTATCTTTCACACTCTCACACTACGAAGTCTCACTTACAAAGTTCTTCTTGATTGCCTCTAGGCAAATACAAAATGGCAATGACTCCACATCTCATAACAATGCTAGAAAAACCTTTATATACGCATAGCAATACTAATTCTCATGCATGAATCGAAGCAACACTAATGGTCATACATGAATCAAGATGATTCATGTACCAATATCGAAGATGAACCAAATGAATCCAATAGATTCATGAATAGAAGTGAGAAATGTACCAAAATTATTCATGAACCAAATCTTTATGACAATTCTCTACATATTCATGTTCAAATTTAGAAAATGATTAAATTTATGCCAGCTTGTTGGCTTAAAATTTTGGGTGTTTTATTGAATGTAATCATAAAGTAGGGCTATGAGTTCAAACTACTACCATGGTAGTTCCTCTTTATTCCATACTAATAGTCTATGCTGTTAATATATGTTCAATCAAAATGTCAGAGGTTTGAATCCTCTCACCCACGCATGATGAACTTTAAACAAAAAAAGGACTATGCATTGAACTTCATGACTTGAATAATATCCAAGTTGAGGCTTGAATGCGTGAGTTAGATGATTGAGAATATGTGTAATGATTAAATTTACTGTAGCTTTTCAACTAAGTTTTGTGGATGCGGCGGTGCTTTAGTCAATGAAGAATGGAAATGATATCCATCACATTTGTGTGATGGATTTTCATTTTTGTTTTAATGAATTTTCTATTCATTGTTGAACGAACTTGATGCCAATTGCTTACACTGTTTCCTTTTCTTTTTTATAATTCCTATTCTTTCGACTTAGTCGTTCTATCCAAATTTATAATGTACGATTTTTGTTCTTATTGTAGCTTCGATCACCGGAATGCAGCCACGTAGTGAGTTTAAAACCACATAAAAGAATTCAGAATGCTAGATCTATGGTCTCTTGTGCAATGAATATGAGTGCAGGACAATCAGATGATCCAGGGAGGGCGAGTTGGGATAGTTTGAAAGTCAGGGTAAAAAAACTTTGGGACAACTCACCAGAGCCAGTGAAGTGCTTCCCTTGGAATGAAGCATTGAATAACTTCATCCAGCTTATTGCTGATCTCATCTTGTCGGTTATCAAATACTTGAGCGTACCATTGCTTGTCGTCACATCTCTCAGCGAGATGTCCTACTGCGCCCATGAAAAGAAGCTTCTTATCGTCCCATTTCCATTAATAATTGGCTTCTCTGTTGCTGAGGTCATGAGACAGACAGCTTTGAGTCTATCTCCAATTCTTAAGGTAAGGTTTCAGCATCATCGTTCCATTACGTGTGAGACGTTAGTTGAATGAATCATAATGATAGTTTATTGACAAAGCATTGGTCTCATATCCTCCATTTTAGCTCTGCTTTTATATCGCCCTTGAAGTATGTTGCTTTAATCATGCTGTTGAATGTTAATCTTACGTTAGTTGAAAAAAACATCAATTGTCTGATTTAGCACTTTGTCGTTTCTTTTTACGTGTTCGCTTGTCACTTTTCTTATTGTTCTTTTAACACTCGTTTCAAACGATAATTTTTGAAATAATGTTAGCTGGGAATGTTTGAACACAGTTCAGTAGTCTTCCTGTTGCTCATTTTTATTTTGAAACACACTCCTGAGCTTATCCTTAAGTAGAAATACAATACAAAGAGCTGTTTAAAGAACTCCTTGATGTTCTTAGCTGTCTTTTAGAACTCCTTGATGTTCTTAGTTGTCTTTGTAGTATTCTTCATTTTGAACGATCATTTTCGAAATTCGGTTAGCTGGGAATGTTTGAACACAGATTAGTCGTCTTCCTGTTGCTCATTTTTATTTGAAACACACTCCTGAGCTTGTCCTAGAGTAGAAATACAATATAAAGAGCTGTTTAAAGAACTCGATGTTCTTAGTCGTATTTGTTGTATTCTTCATTTTGAACGATCATTTTCGAAATTCGGTTAGCTGGGAATGTTTGAACACAGTTTAGTAGTCTTCCTGTTGCTCATTTTTCATTTGAAACACACTCTAGATCTTGTTCTTCAGTAGAAATACAATATAAAGAGCTGTATAAAGATCTTGATTGAATTCTAGTTTCCTGTGAATTCTACTGAACATTTCTTGTGAATTTCCTTTTGCCTTTTTATGATTCAGGATCTTGAAGTACCATGGCATTTAATCACAATTGCTTTGTTCTTCACACTCATTAAACTGCCTGGCCCATACTACCCATATTGGGGACGCATATTCCTTCCCCATTTTGCAAATGGGGGTCTGTTGAGAACAGTATGGTCTATGTTTCTCTGGTTTAGAAGACCTCGAAAGACATCGATGTTGCTGAAGCAGAAAGAGAATCACCTAGATACACCGAAGAACTAATCGAGCAGTCTCCAAGAACATTGGAGTAGCAGCACAGAAAGTTTCAGATGAATTATCCATCCAGAACGAAGTGATTGAACGAGGCGAGGGAGCGAACTGATGAATAAATTGTTGTAGTACGAGACGGATTATGGTTGATTGAAGGATTGTTTTGGTGATGGGACATTGGAGATAAAGCCTTAAAATGAAAGGCTAAATGTGTTTTCATGTAGTAGCACAGAAAGTTTTGGAGGCTGTATTGGAGTAACTCAAATCCTAGAACATGAACATAGTACACAATGTTCTTCAAATTCCTTCCTAAATTTTAAGAAAATTTGTAAGATGGGGCTAAGCTATACTTATGTCTGTTCTAAGAATGTTGTCACAAATACGGCGGAAAATTTGCATGTGAATATCTTAATCACTAAACTACGTTC

mRNA sequence

CATGGGGAACCGGCAGCGGATTTCGGTCCCGCCATCTTAAACCCTTTTATCCGATTCAGGTTTTCGTTTCGCTTCGAGTTCGAGCTTGTTCCTCTCACAAATTTTCAGGTTTCTTTTGGGTTATGGTGTATCCGTGAACAAACCCTTCTTCCAAAACTGTGTTTCGTCCCTTAACAGCTTCAATTGACGCCCATCCATGGCGACCCACCTTCAAATTTCCGCTAAAATGGCCCTTCACGCCCCTGTTCTTCTAGCGCCCAGACTTCGATCACCGGAATGCAGCCACGTAGTGAGTTTAAAACCACATAAAAGAATTCAGAATGCTAGATCTATGGTCTCTTGTGCAATGAATATGAGTGCAGGACAATCAGATGATCCAGGGAGGGCGAGTTGGGATAGTTTGAAAGTCAGGGTAAAAAAACTTTGGGACAACTCACCAGAGCCAGTGAAGTGCTTCCCTTGGAATGAAGCATTGAATAACTTCATCCAGCTTATTGCTGATCTCATCTTGTCGGTTATCAAATACTTGAGCGTACCATTGCTTGTCGTCACATCTCTCAGCGAGATGTCCTACTGCGCCCATGAAAAGAAGCTTCTTATCGTCCCATTTCCATTAATAATTGGCTTCTCTGTTGCTGAGGTCATGAGACAGACAGCTTTGAGTCTATCTCCAATTCTTAAGGATCTTGAAGTACCATGGCATTTAATCACAATTGCTTTGTTCTTCACACTCATTAAACTGCCTGGCCCATACTACCCATATTGGGGACGCATATTCCTTCCCCATTTTGCAAATGGGGGTCTGTTGAGAACAGTATGGTCTATGTTTCTCTGGTTTAGAAGACCTCGAAAGACATCGATGTTGCTGAAGCAGAAAGAGAATCACCTAGATACACCGAAGAACTAATCGAGCAGTCTCCAAGAACATTGGAGTAGCAGCACAGAAAGTTTCAGATGAATTATCCATCCAGAACGAAGTGATTGAACGAGGCGAGGGAGCGAACTGATGAATAAATTGTTGTAGTACGAGACGGATTATGGTTGATTGAAGGATTGTTTTGGTGATGGGACATTGGAGATAAAGCCTTAAAATGAAAGGCTAAATGTGTTTTCATGTAGTAGCACAGAAAGTTTTGGAGGCTGTATTGGAGTAACTCAAATCCTAGAACATGAACATAGTACACAATGTTCTTCAAATTCCTTCCTAAATTTTAAGAAAATTTGTAAGATGGGGCTAAGCTATACTTATGTCTGTTCTAAGAATGTTGTCACAAATACGGCGGAAAATTTGCATGTGAATATCTTAATCACTAAACTACGTTC

Coding sequence (CDS)

ATGGCGACCCACCTTCAAATTTCCGCTAAAATGGCCCTTCACGCCCCTGTTCTTCTAGCGCCCAGACTTCGATCACCGGAATGCAGCCACGTAGTGAGTTTAAAACCACATAAAAGAATTCAGAATGCTAGATCTATGGTCTCTTGTGCAATGAATATGAGTGCAGGACAATCAGATGATCCAGGGAGGGCGAGTTGGGATAGTTTGAAAGTCAGGGTAAAAAAACTTTGGGACAACTCACCAGAGCCAGTGAAGTGCTTCCCTTGGAATGAAGCATTGAATAACTTCATCCAGCTTATTGCTGATCTCATCTTGTCGGTTATCAAATACTTGAGCGTACCATTGCTTGTCGTCACATCTCTCAGCGAGATGTCCTACTGCGCCCATGAAAAGAAGCTTCTTATCGTCCCATTTCCATTAATAATTGGCTTCTCTGTTGCTGAGGTCATGAGACAGACAGCTTTGAGTCTATCTCCAATTCTTAAGGATCTTGAAGTACCATGGCATTTAATCACAATTGCTTTGTTCTTCACACTCATTAAACTGCCTGGCCCATACTACCCATATTGGGGACGCATATTCCTTCCCCATTTTGCAAATGGGGGTCTGTTGAGAACAGTATGGTCTATGTTTCTCTGGTTTAGAAGACCTCGAAAGACATCGATGTTGCTGAAGCAGAAAGAGAATCACCTAGATACACCGAAGAACTAA

Protein sequence

MATHLQISAKMALHAPVLLAPRLRSPECSHVVSLKPHKRIQNARSMVSCAMNMSAGQSDDPGRASWDSLKVRVKKLWDNSPEPVKCFPWNEALNNFIQLIADLILSVIKYLSVPLLVVTSLSEMSYCAHEKKLLIVPFPLIIGFSVAEVMRQTALSLSPILKDLEVPWHLITIALFFTLIKLPGPYYPYWGRIFLPHFANGGLLRTVWSMFLWFRRPRKTSMLLKQKENHLDTPKN

Homology

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BLAST of Cp4.1LG04g08240 vs. TrEMBL
Match: A0A0A0K6P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074900 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 2.3e-108
Identity = 197/234 (84.19%), Postives = 211/234 (90.17%), Query Frame = 1


Query: 3   THLQISAKMALHAPVLLAPRLRSPECSHVVSLKPHKRIQNARSMVSCAMNMSAGQSDDPG 62
           TH Q S K+ALHAP LLAP  RSPECSHVVSLKPHKR QNA S+VSCA NM+AGQSDD G
Sbjct: 10  THFQTSMKLALHAPFLLAPSRRSPECSHVVSLKPHKRFQNAGSVVSCATNMTAGQSDDSG 69

Query: 63  RASWDSLKVRVKKLWDNSPEPVKCFPWNEALNNFIQLIADLILSVIKYLSVPLLVVTSLS 122
           R +WDSLK RVK+LW++SPEPVK FPWNEAL+NFIQLIADLIL+VIKYL VPLL+VTSLS
Sbjct: 70  RVNWDSLKNRVKQLWESSPEPVKSFPWNEALDNFIQLIADLILTVIKYLFVPLLLVTSLS 129

Query: 123 EMSYCAHEKKLLIVPFPLIIGFSVAEVMRQTALSLSPILKDLEVPWHLITIALFFTLIKL 182
           EMSYCAHEKKLLIVPF  IIGFS AEVMRQTALSLSPILKDLEVPWHLITIA+FFTLIKL
Sbjct: 130 EMSYCAHEKKLLIVPFLFIIGFSAAEVMRQTALSLSPILKDLEVPWHLITIAIFFTLIKL 189

Query: 183 PGPYYPYWGRIFLPHFANGGLLRTVWSMFLWFRRPRKTSMLLKQKENHLDTPKN 237
           PGP YPYWGRIF+PH ANGGL+RT WSMFLWFRRP+KTSMLLK  ENHLDT KN
Sbjct: 190 PGPSYPYWGRIFIPHLANGGLVRTTWSMFLWFRRPQKTSMLLKHNENHLDTKKN 243

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BLAST of Cp4.1LG04g08240 vs. TrEMBL
Match: A0A067L2F1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04887 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.4e-73
Identity = 141/231 (61.04%), Postives = 172/231 (74.46%), Query Frame = 1


Query: 4   HLQISAKMALHAPVLLAPRLRSPE-----CSHVVSLKPHKRIQNARSMVSCAMNMSAGQS 63
           H+Q S KMAL        R+  P      CSH +S+KP++  QN +  VSCA+NM+AGQS
Sbjct: 15  HVQTSTKMALRVRSPSIQRITGPSQYFEACSHSLSVKPNQIFQNTKLNVSCAINMAAGQS 74

Query: 64  DDPGRASWDSLKVRVKKLWDNSPEPVKCFPWNEALNNFIQLIADLILSVIKYLSVPLLVV 123
            DP +  ++ L  + +KLWD+ P+PVK FPWN AL NFIQLI DL+++VIKYL VPLL V
Sbjct: 75  GDPEKFQFEHLSSKARKLWDSCPQPVKSFPWNRALENFIQLILDLVVAVIKYLCVPLLAV 134

Query: 124 TSLSEMSYCAHEKKLLIVPFPLIIGFSVAEVMRQTALSLSPILKDLEVPWHLITIALFFT 183
           +SLSEMSYCAH+KKL  VPFPL+IG +VA  ++ TAL LSP LKD EVPWHLI IA+FFT
Sbjct: 135 SSLSEMSYCAHQKKLFYVPFPLLIGIAVAGALKDTALELSPRLKDAEVPWHLIAIAIFFT 194

Query: 184 LIKLPGPYYPYWGRIFLPHFANGGLLRTVWSMFLWFRRPRKTSMLLKQKEN 230
           LIKLPGP YPYWGRIF+PH ANG L RT+WS FLWFRRPRK S  + Q+ +
Sbjct: 195 LIKLPGPCYPYWGRIFVPHIANGVLWRTLWSAFLWFRRPRKGSGAVLQQNS 245

[Close]

BLAST of Cp4.1LG04g08240 vs. TrEMBL
Match: V4RPJ5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029145mg PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 8.4e-71
Identity = 132/224 (58.93%), Postives = 168/224 (75.00%), Query Frame = 1


Query: 2   ATHLQISAKMALHA----PVLLAPRLRSPECSHVVSLKPHKRIQNARSMVSCAMNMSAGQ 61
           +THL   + + LH     P   A +LR       +    +  ++NA+  + CAMNM+AGQ
Sbjct: 14  STHLHTPSILPLHGIKVLPYFRASKLR-------LGANRNGPLRNAKGNICCAMNMAAGQ 73

Query: 62  SDDPGRASWDSLKVRVKKLWDNSPEPVKCFPWNEALNNFIQLIADLILSVIKYLSVPLLV 121
           S DP + + D L  RV+KLWDNSP+PVK FPWN AL NFIQLI DL ++V+KYLSVPLL 
Sbjct: 74  SGDPEKLNLDQLVNRVRKLWDNSPQPVKSFPWNRALENFIQLILDLFMAVVKYLSVPLLA 133

Query: 122 VTSLSEMSYCAHEKKLLIVPFPLIIGFSVAEVMRQTALSLSPILKDLEVPWHLITIALFF 181
           V+SLSEMSYCAHEKKL +VP PL+IG ++A+++R+T L LSP+LKD EVPWHLI I +FF
Sbjct: 134 VSSLSEMSYCAHEKKLFLVPVPLLIGMAIADLLRETILDLSPLLKDAEVPWHLIAIGIFF 193

Query: 182 TLIKLPGPYYPYWGRIFLPHFANGGLLRTVWSMFLWFRRPRKTS 222
           T++KLPGPYYPYWGRIF+PHFANG L RT+W  FLW+R+P+K S
Sbjct: 194 TVLKLPGPYYPYWGRIFIPHFANGALWRTLWFAFLWYRKPKKAS 230

[Close]

BLAST of Cp4.1LG04g08240 vs. TrEMBL
Match: A0A067DAN9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0255731mg PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 5.5e-70
Identity = 122/180 (67.78%), Postives = 151/180 (83.89%), Query Frame = 1


Query: 42  NARSMVSCAMNMSAGQSDDPGRASWDSLKVRVKKLWDNSPEPVKCFPWNEALNNFIQLIA 101
           NA+  + CAMNM+AGQS DP + + D L  RV+KLWDNSP+PVK FPWN AL NFIQLI 
Sbjct: 23  NAKGNICCAMNMAAGQSGDPEKLNLDQLVNRVRKLWDNSPQPVKSFPWNRALENFIQLIL 82

Query: 102 DLILSVIKYLSVPLLVVTSLSEMSYCAHEKKLLIVPFPLIIGFSVAEVMRQTALSLSPIL 161
           DL ++V+KYLSVPLL V+SLSEMSYCAHEKKL +VP PL+IG ++++++R+T L LSP+L
Sbjct: 83  DLFMAVVKYLSVPLLAVSSLSEMSYCAHEKKLFLVPVPLLIGMAISDLLRETILDLSPLL 142

Query: 162 KDLEVPWHLITIALFFTLIKLPGPYYPYWGRIFLPHFANGGLLRTVWSMFLWFRRPRKTS 221
           KD EVPWHLI I +FFT+IKLPGPYYPYWGR+F+PHFANG L RT+W  FLW+R+P+K S
Sbjct: 143 KDAEVPWHLIAIGIFFTVIKLPGPYYPYWGRLFIPHFANGALWRTLWFAFLWYRKPKKAS 202

[Close]

BLAST of Cp4.1LG04g08240 vs. TrEMBL
Match: A0A067DED7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0255731mg PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 5.5e-70
Identity = 122/180 (67.78%), Postives = 151/180 (83.89%), Query Frame = 1


Query: 42  NARSMVSCAMNMSAGQSDDPGRASWDSLKVRVKKLWDNSPEPVKCFPWNEALNNFIQLIA 101
           NA+  + CAMNM+AGQS DP + + D L  RV+KLWDNSP+PVK FPWN AL NFIQLI 
Sbjct: 22  NAKGNICCAMNMAAGQSGDPEKLNLDQLVNRVRKLWDNSPQPVKSFPWNRALENFIQLIL 81

Query: 102 DLILSVIKYLSVPLLVVTSLSEMSYCAHEKKLLIVPFPLIIGFSVAEVMRQTALSLSPIL 161
           DL ++V+KYLSVPLL V+SLSEMSYCAHEKKL +VP PL+IG ++++++R+T L LSP+L
Sbjct: 82  DLFMAVVKYLSVPLLAVSSLSEMSYCAHEKKLFLVPVPLLIGMAISDLLRETILDLSPLL 141

Query: 162 KDLEVPWHLITIALFFTLIKLPGPYYPYWGRIFLPHFANGGLLRTVWSMFLWFRRPRKTS 221
           KD EVPWHLI I +FFT+IKLPGPYYPYWGR+F+PHFANG L RT+W  FLW+R+P+K S
Sbjct: 142 KDAEVPWHLIAIGIFFTVIKLPGPYYPYWGRLFIPHFANGALWRTLWFAFLWYRKPKKAS 201

[Close]

BLAST of Cp4.1LG04g08240 vs. TAIR10
Match: AT1G49510.1 (AT1G49510.1 embryo defective 1273)

HSP 1 Score: 238.4 bits (607), Expect = 4.4e-63
Identity = 109/179 (60.89%), Postives = 144/179 (80.45%), Query Frame = 1


Query: 44  RSMVSCAMNMSAGQS-DDPGRASWDSLKVRVKKLWDNSPEPVKCFPWNEALNNFIQLIAD 103
           RS++  A++M +G S + P + ++D+L  R K +WDNSP+PVK FPWN A  NFIQL+ D
Sbjct: 50  RSLLCRAIHMESGHSGEQPKKLNFDNLLRRTKHVWDNSPQPVKEFPWNRAFGNFIQLVLD 109

Query: 104 LILSVIKYLSVPLLVVTSLSEMSYCAHEKKLLIVPFPLIIGFSVAEVMRQTALSLSPILK 163
           L +SV+K+L VP+L V+S+SEMSYCAHE+KL +VPFPL+IG  VA V+++TAL +SP LK
Sbjct: 110 LAISVVKFLFVPILAVSSISEMSYCAHERKLALVPFPLVIGMVVAGVLQETALKISPRLK 169

Query: 164 DLEVPWHLITIALFFTLIKLPGPYYPYWGRIFLPHFANGGLLRTVWSMFLWFRRPRKTS 222
           + EVPWHLI + +FFTLIKLPGPYYPYWGR+ +PHFANG LLR +WSMF W+++ R TS
Sbjct: 170 EAEVPWHLIAMMMFFTLIKLPGPYYPYWGRLLVPHFANGVLLRALWSMFFWYKKTRNTS 228

[Close]

BLAST of Cp4.1LG04g08240 vs. NCBI nr
Match: gi|659109835|ref|XP_008454906.1| (PREDICTED: uncharacterized protein LOC103495211 [Cucumis melo])

HSP 1 Score: 414.1 bits (1063), Expect = 1.7e-112
Identity = 201/234 (85.90%), Postives = 216/234 (92.31%), Query Frame = 1


Query: 3   THLQISAKMALHAPVLLAPRLRSPECSHVVSLKPHKRIQNARSMVSCAMNMSAGQSDDPG 62
           TH Q S KMALHAP LLAP  RSPECSH+VSLKPHKR QNARS+VSCAMNM+AGQSDD G
Sbjct: 10  THFQTSIKMALHAPFLLAPSCRSPECSHIVSLKPHKRFQNARSVVSCAMNMTAGQSDDSG 69

Query: 63  RASWDSLKVRVKKLWDNSPEPVKCFPWNEALNNFIQLIADLILSVIKYLSVPLLVVTSLS 122
           R +WDSLK +VK+LWD SPEPVK FPWNEAL+NFIQLIADLIL+VIKYLSVPLL+VTSLS
Sbjct: 70  RVNWDSLKNKVKQLWDTSPEPVKSFPWNEALDNFIQLIADLILTVIKYLSVPLLLVTSLS 129

Query: 123 EMSYCAHEKKLLIVPFPLIIGFSVAEVMRQTALSLSPILKDLEVPWHLITIALFFTLIKL 182
           EMSYCAHEKKLLIVPFP IIGFSVAEVMRQTALSLSPILKDLEVPWHLITIA+FFTLIKL
Sbjct: 130 EMSYCAHEKKLLIVPFPFIIGFSVAEVMRQTALSLSPILKDLEVPWHLITIAIFFTLIKL 189

Query: 183 PGPYYPYWGRIFLPHFANGGLLRTVWSMFLWFRRPRKTSMLLKQKENHLDTPKN 237
           PGPY+PYWGRIF+PH ANGGL+RT+WS FLWFRRP+KTSMLLK  ENHLDT KN
Sbjct: 190 PGPYFPYWGRIFIPHLANGGLVRTLWSFFLWFRRPQKTSMLLKHNENHLDTKKN 243

[Close]

BLAST of Cp4.1LG04g08240 vs. NCBI nr
Match: gi|778725219|ref|XP_004137121.2| (PREDICTED: uncharacterized protein LOC101221519 [Cucumis sativus])

HSP 1 Score: 399.8 bits (1026), Expect = 3.3e-108
Identity = 197/234 (84.19%), Postives = 211/234 (90.17%), Query Frame = 1


Query: 3   THLQISAKMALHAPVLLAPRLRSPECSHVVSLKPHKRIQNARSMVSCAMNMSAGQSDDPG 62
           TH Q S K+ALHAP LLAP  RSPECSHVVSLKPHKR QNA S+VSCA NM+AGQSDD G
Sbjct: 10  THFQTSMKLALHAPFLLAPSRRSPECSHVVSLKPHKRFQNAGSVVSCATNMTAGQSDDSG 69

Query: 63  RASWDSLKVRVKKLWDNSPEPVKCFPWNEALNNFIQLIADLILSVIKYLSVPLLVVTSLS 122
           R +WDSLK RVK+LW++SPEPVK FPWNEAL+NFIQLIADLIL+VIKYL VPLL+VTSLS
Sbjct: 70  RVNWDSLKNRVKQLWESSPEPVKSFPWNEALDNFIQLIADLILTVIKYLFVPLLLVTSLS 129

Query: 123 EMSYCAHEKKLLIVPFPLIIGFSVAEVMRQTALSLSPILKDLEVPWHLITIALFFTLIKL 182
           EMSYCAHEKKLLIVPF  IIGFS AEVMRQTALSLSPILKDLEVPWHLITIA+FFTLIKL
Sbjct: 130 EMSYCAHEKKLLIVPFLFIIGFSAAEVMRQTALSLSPILKDLEVPWHLITIAIFFTLIKL 189

Query: 183 PGPYYPYWGRIFLPHFANGGLLRTVWSMFLWFRRPRKTSMLLKQKENHLDTPKN 237
           PGP YPYWGRIF+PH ANGGL+RT WSMFLWFRRP+KTSMLLK  ENHLDT KN
Sbjct: 190 PGPSYPYWGRIFIPHLANGGLVRTTWSMFLWFRRPQKTSMLLKHNENHLDTKKN 243

[Close]

BLAST of Cp4.1LG04g08240 vs. NCBI nr
Match: gi|802598826|ref|XP_012072461.1| (PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas])

HSP 1 Score: 284.3 bits (726), Expect = 2.0e-73
Identity = 141/231 (61.04%), Postives = 172/231 (74.46%), Query Frame = 1


Query: 4   HLQISAKMALHAPVLLAPRLRSPE-----CSHVVSLKPHKRIQNARSMVSCAMNMSAGQS 63
           H+Q S KMAL        R+  P      CSH +S+KP++  QN +  VSCA+NM+AGQS
Sbjct: 15  HVQTSTKMALRVRSPSIQRITGPSQYFEACSHSLSVKPNQIFQNTKLNVSCAINMAAGQS 74

Query: 64  DDPGRASWDSLKVRVKKLWDNSPEPVKCFPWNEALNNFIQLIADLILSVIKYLSVPLLVV 123
            DP +  ++ L  + +KLWD+ P+PVK FPWN AL NFIQLI DL+++VIKYL VPLL V
Sbjct: 75  GDPEKFQFEHLSSKARKLWDSCPQPVKSFPWNRALENFIQLILDLVVAVIKYLCVPLLAV 134

Query: 124 TSLSEMSYCAHEKKLLIVPFPLIIGFSVAEVMRQTALSLSPILKDLEVPWHLITIALFFT 183
           +SLSEMSYCAH+KKL  VPFPL+IG +VA  ++ TAL LSP LKD EVPWHLI IA+FFT
Sbjct: 135 SSLSEMSYCAHQKKLFYVPFPLLIGIAVAGALKDTALELSPRLKDAEVPWHLIAIAIFFT 194

Query: 184 LIKLPGPYYPYWGRIFLPHFANGGLLRTVWSMFLWFRRPRKTSMLLKQKEN 230
           LIKLPGP YPYWGRIF+PH ANG L RT+WS FLWFRRPRK S  + Q+ +
Sbjct: 195 LIKLPGPCYPYWGRIFVPHIANGVLWRTLWSAFLWFRRPRKGSGAVLQQNS 245

[Close]

BLAST of Cp4.1LG04g08240 vs. NCBI nr
Match: gi|567860858|ref|XP_006423083.1| (hypothetical protein CICLE_v10029145mg [Citrus clementina])

HSP 1 Score: 275.0 bits (702), Expect = 1.2e-70
Identity = 132/224 (58.93%), Postives = 168/224 (75.00%), Query Frame = 1


Query: 2   ATHLQISAKMALHA----PVLLAPRLRSPECSHVVSLKPHKRIQNARSMVSCAMNMSAGQ 61
           +THL   + + LH     P   A +LR       +    +  ++NA+  + CAMNM+AGQ
Sbjct: 14  STHLHTPSILPLHGIKVLPYFRASKLR-------LGANRNGPLRNAKGNICCAMNMAAGQ 73

Query: 62  SDDPGRASWDSLKVRVKKLWDNSPEPVKCFPWNEALNNFIQLIADLILSVIKYLSVPLLV 121
           S DP + + D L  RV+KLWDNSP+PVK FPWN AL NFIQLI DL ++V+KYLSVPLL 
Sbjct: 74  SGDPEKLNLDQLVNRVRKLWDNSPQPVKSFPWNRALENFIQLILDLFMAVVKYLSVPLLA 133

Query: 122 VTSLSEMSYCAHEKKLLIVPFPLIIGFSVAEVMRQTALSLSPILKDLEVPWHLITIALFF 181
           V+SLSEMSYCAHEKKL +VP PL+IG ++A+++R+T L LSP+LKD EVPWHLI I +FF
Sbjct: 134 VSSLSEMSYCAHEKKLFLVPVPLLIGMAIADLLRETILDLSPLLKDAEVPWHLIAIGIFF 193

Query: 182 TLIKLPGPYYPYWGRIFLPHFANGGLLRTVWSMFLWFRRPRKTS 222
           T++KLPGPYYPYWGRIF+PHFANG L RT+W  FLW+R+P+K S
Sbjct: 194 TVLKLPGPYYPYWGRIFIPHFANGALWRTLWFAFLWYRKPKKAS 230

[Close]

BLAST of Cp4.1LG04g08240 vs. NCBI nr
Match: gi|703097625|ref|XP_010096165.1| (hypothetical protein L484_026898 [Morus notabilis])

HSP 1 Score: 272.3 bits (695), Expect = 7.8e-70
Identity = 134/222 (60.36%), Postives = 170/222 (76.58%), Query Frame = 1


Query: 8   SAKMALHA-PVL-------LAPRLRSPECSHVVSLKPHKRIQNARSMVSCAMNMSAGQSD 67
           S KMAL+  P L       L+ R++   CS     K +  +QN    + CA+NM+AG+S+
Sbjct: 16  SMKMALNTRPPLFQGFKEGLSQRIKESGCSF--GFKSYGLVQNPVPNIFCAINMAAGRSN 75

Query: 68  DPGRASWDSLKVRVKKLWDNSPEPVKCFPWNEALNNFIQLIADLILSVIKYLSVPLLVVT 127
           DP + + D L  + +KLW++SP+PVK FPWN  L+NFIQL  DLIL+V+KYLSVPLLVVT
Sbjct: 76  DPEKTNLDHLMDKARKLWESSPQPVKSFPWNRTLDNFIQLTLDLILAVVKYLSVPLLVVT 135

Query: 128 SLSEMSYCAHEKKLLIVPFPLIIGFSVAEVMRQTALSLSPILKDLEVPWHLITIALFFTL 187
           SLSEMSYCAHE+KL +VPFP+ +G +VA V+RQTAL +SP+LKD EVPWHLI +A+FFTL
Sbjct: 136 SLSEMSYCAHERKLKLVPFPIFLGIAVAGVLRQTALDISPLLKDAEVPWHLICMAIFFTL 195

Query: 188 IKLPGPYYPYWGRIFLPHFANGGLLRTVWSMFLWFRRPRKTS 222
           +KLPGPYYPYWGRIF+PHFANGGL RT+W   LW+RRP+K S
Sbjct: 196 LKLPGPYYPYWGRIFIPHFANGGLFRTLWFALLWYRRPQKAS 235

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g08240 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g08240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6P0_CUCSA	2.3e-108	84.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074900 PE=4 SV=1	[more]
A0A067L2F1_JATCU	1.4e-73	61.04	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04887 PE=4 SV=1	[more]
V4RPJ5_9ROSI	8.4e-71	58.93	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029145mg PE=4 SV=1	[more]
A0A067DAN9_CITSI	5.5e-70	67.78	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0255731mg PE=4 ...	[more]
A0A067DED7_CITSI	5.5e-70	67.78	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0255731mg PE=4 ...	[more]

BLAST of Cp4.1LG04g08240 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49510.1	4.4e-63	60.89	embryo defective 1273	[more]

BLAST of Cp4.1LG04g08240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109835\|ref\|XP_008454906.1\|	1.7e-112	85.90	PREDICTED: uncharacterized protein LOC103495211 [Cucumis melo]	[more]
gi\|778725219\|ref\|XP_004137121.2\|	3.3e-108	84.19	PREDICTED: uncharacterized protein LOC101221519 [Cucumis sativus]	[more]
gi\|802598826\|ref\|XP_012072461.1\|	2.0e-73	61.04	PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]	[more]
gi\|567860858\|ref\|XP_006423083.1\|	1.2e-70	58.93	hypothetical protein CICLE_v10029145mg [Citrus clementina]	[more]
gi\|703097625\|ref\|XP_010096165.1\|	7.8e-70	60.36	hypothetical protein L484_026898 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009658	chloroplast organization
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g08240.1	Cp4.1LG04g08240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36000	FAMILY NOT NAMED	coord: 33..232 score: 2.0E
None	No IPR available	PANTHER	PTHR36000:SF2	SUBFAMILY NOT NAMED	coord: 33..232 score: 2.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g08240	Cucsa.220110	Cucumber (Gy14) v1	cgycpeB0602
Cp4.1LG04g08240	CmaCh11G017710	Cucurbita maxima (Rimu)	cmacpeB154
Cp4.1LG04g08240	CmoCh11G013390	Cucurbita moschata (Rifu)	cmocpeB126
Cp4.1LG04g08240	CmoCh19G006430	Cucurbita moschata (Rifu)	cmocpeB494
Cp4.1LG04g08240	Cla015988	Watermelon (97103) v1	cpewmB665
Cp4.1LG04g08240	Csa7G074900	Cucumber (Chinese Long) v2	cpecuB695
Cp4.1LG04g08240	MELO3C018427	Melon (DHL92) v3.5.1	cpemeB604
Cp4.1LG04g08240	ClCG02G005650	Watermelon (Charleston Gray)	cpewcgB590
Cp4.1LG04g08240	CSPI07G07880	Wild cucumber (PI 183967)	cpecpiB697
Cp4.1LG04g08240	Lsi11G010320	Bottle gourd (USVL1VR-Ls)	cpelsiB533
Cp4.1LG04g08240	MELO3C018427.2	Melon (DHL92) v3.6.1	cpemedB715
Cp4.1LG04g08240	CsaV3_7G008860	Cucumber (Chinese Long) v3	cpecucB0868
Cp4.1LG04g08240	Bhi05G001018	Wax gourd	cpewgoB0855
Cp4.1LG04g08240	CsGy7G007440	Cucumber (Gy14) v2	cgybcpeB969

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG04g08240	Cp4.1LG15g05130	Cucurbita pepo (Zucchini)	cpecpeB269

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g08240	Cucumber (Gy14) v2	cgybcpeB237
Cp4.1LG04g08240	Melon (DHL92) v3.6.1	cpemedB746
Cp4.1LG04g08240	Silver-seed gourd	carcpeB0296
Cp4.1LG04g08240	Cucumber (Chinese Long) v3	cpecucB0835
Cp4.1LG04g08240	Wax gourd	cpewgoB0864
Cp4.1LG04g08240	Cucurbita pepo (Zucchini)	cpecpeB500
Cp4.1LG04g08240	Cucurbita maxima (Rimu)	cmacpeB539
Cp4.1LG04g08240	Wild cucumber (PI 183967)	cpecpiB671
Cp4.1LG04g08240	Cucumber (Chinese Long) v2	cpecuB668
Cp4.1LG04g08240	Bottle gourd (USVL1VR-Ls)	cpelsiB525