Cp4.1LG04g08140 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g08140
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG04 : 3421290 .. 3422707 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCATTTCCGATCAGAAATGGCGTCTCTCATGGCGGTCCGGCGTGCTCGAACCCCCATTCTTATCTCCTTCTTCTTCAAGGTACGGTCTTCTCTCCCTTCTCGTTTTACATTTTCTTGCGGAAACCAGACAGAGACTCTAATCAAAGCCCTATGCACCTCGGCAACCCCTAATGATTTCTCAAATTTCCCTCCACCGCCGCAACAACGTTCTTCATCCGATCCTCGATTTCTTCAGGGCCAATGGGGCTCACCGAACCAAGTTCATTCTCGGAGTGGGAATTTTAATAATCAGTCGTTCTCGGAGTTTCAGAATCGCGACTATGTTCCACAGGGAAGCTCTAATAATCAAATGAATTATCGGAGTGAGAACCAGAGCTCTCACCCGAATCCTGGATTTTCCCGGCAGGGTCAGGGCTATTCTCAAGCCGGTAACCCTAATTCGTGGAATCCTCCGAATCAGAGCTACCCGCAGTATCAAAATCCTCCGCAGCCGAACGCTCAACATTTCAATTATCAGCAACAAAGAAGCCCCAACCAATGGAACAATCAAAATCAGGGATACCCACAATTTGGAAGGCCTGGGCAGGGGAACCCACAAGTAGAGAATTCTTATCAGTTGAATAATCAAGCTGGGGTTCAAGGGCATGGTTCTCAAAATCAAGCACTAAATCCCTCTGTATCTCCTACTGATGAACTGCGGCGCTTTTGTGAAGAGGGAAAGATTAAAGAAGCTGTTGAGTTGTTGAAAGAGGGTGTTAAAGCTGATGCTGATTGTTTCCTTGTGTTGTTTGATCTGTGTGGGAAATCAAATTCATTCGACAATGCTAAAGTAGTTCATGATTACTTTTTACAGTCAACTTATAGAAGCGATTTGCAATTGAATAATAAAGTTCTTGAGATGTATGGGAAATGTGGAAGCATGAGTGATGCACGGAGGGTGTTCGACCATATGCCTGACAGGAATATTGACTCTTGGCATTTGATGATAAAAGGATATGCAGAGAATGGATTGGGTGATGAGGGTCTGGAGTTATTTGAGAGTATGAAGAAGCTGGGATTGCAACCCAATTCACAAACATTTCTTTATGTAATGCGAGCTTGTGCTAGTGCGAGTGCTATAGAAGAAGGATTTATGTACTTTGAGTCAATGAAAAGTGATTATCAAATCAACCCAGATCTGGATCATTATTTGGGGCTCTTGGGTGTCCTTGGAGAACCTGGGCACATGAACGAAGCTTTCGAGTACGTCGAAAAACTGCCCATGGAGCCGACGGTTGAGATATGGGAGACTTTGAAAAACTATGCTAGAATTCATGGAGATGTTGATCTTGAAGACTATGCAGAGGAGCTAATTGTGGATCTGGGCCCGACGAAAGCTGCCTCGAGTAAGAAGATACCTACACCACCTCCCAAAAGG

mRNA sequence

GCCATTTCCGATCAGAAATGGCGTCTCTCATGGCGGTCCGGCGTGCTCGAACCCCCATTCTTATCTCCTTCTTCTTCAAGGTACGGTCTTCTCTCCCTTCTCGTTTTACATTTTCTTGCGGAAACCAGACAGAGACTCTAATCAAAGCCCTATGCACCTCGGCAACCCCTAATGATTTCTCAAATTTCCCTCCACCGCCGCAACAACGTTCTTCATCCGATCCTCGATTTCTTCAGGGCCAATGGGGCTCACCGAACCAAGTTCATTCTCGGAGTGGGAATTTTAATAATCAGTCGTTCTCGGAGTTTCAGAATCGCGACTATGTTCCACAGGGAAGCTCTAATAATCAAATGAATTATCGGAGTGAGAACCAGAGCTCTCACCCGAATCCTGGATTTTCCCGGCAGGGTCAGGGCTATTCTCAAGCCGGTAACCCTAATTCGTGGAATCCTCCGAATCAGAGCTACCCGCAGTATCAAAATCCTCCGCAGCCGAACGCTCAACATTTCAATTATCAGCAACAAAGAAGCCCCAACCAATGGAACAATCAAAATCAGGGATACCCACAATTTGGAAGGCCTGGGCAGGGGAACCCACAAGTAGAGAATTCTTATCAGTTGAATAATCAAGCTGGGGTTCAAGGGCATGGTTCTCAAAATCAAGCACTAAATCCCTCTGTATCTCCTACTGATGAACTGCGGCGCTTTTGTGAAGAGGGAAAGATTAAAGAAGCTGTTGAGTTGTTGAAAGAGGGTGTTAAAGCTGATGCTGATTGTTTCCTTGTGTTGTTTGATCTGTGTGGGAAATCAAATTCATTCGACAATGCTAAAGAGCTAATTGTGGATCTGGGCCCGACGAAAGCTGCCTCGAGTAAGAAGATACCTACACCACCTCCCAAAAGG

Coding sequence (CDS)

ATGGCGTCTCTCATGGCGGTCCGGCGTGCTCGAACCCCCATTCTTATCTCCTTCTTCTTCAAGGTACGGTCTTCTCTCCCTTCTCGTTTTACATTTTCTTGCGGAAACCAGACAGAGACTCTAATCAAAGCCCTATGCACCTCGGCAACCCCTAATGATTTCTCAAATTTCCCTCCACCGCCGCAACAACGTTCTTCATCCGATCCTCGATTTCTTCAGGGCCAATGGGGCTCACCGAACCAAGTTCATTCTCGGAGTGGGAATTTTAATAATCAGTCGTTCTCGGAGTTTCAGAATCGCGACTATGTTCCACAGGGAAGCTCTAATAATCAAATGAATTATCGGAGTGAGAACCAGAGCTCTCACCCGAATCCTGGATTTTCCCGGCAGGGTCAGGGCTATTCTCAAGCCGGTAACCCTAATTCGTGGAATCCTCCGAATCAGAGCTACCCGCAGTATCAAAATCCTCCGCAGCCGAACGCTCAACATTTCAATTATCAGCAACAAAGAAGCCCCAACCAATGGAACAATCAAAATCAGGGATACCCACAATTTGGAAGGCCTGGGCAGGGGAACCCACAAGTAGAGAATTCTTATCAGTTGAATAATCAAGCTGGGGTTCAAGGGCATGGTTCTCAAAATCAAGCACTAAATCCCTCTGTATCTCCTACTGATGAACTGCGGCGCTTTTGTGAAGAGGGAAAGATTAAAGAAGCTGTTGAGTTGTTGAAAGAGGGTGTTAAAGCTGATGCTGATTGTTTCCTTGTGTTGTTTGATCTGTGTGGGAAATCAAATTCATTCGACAATGCTAAAGAGCTAATTGTGGATCTGGGCCCGACGAAAGCTGCCTCGAGTAAGAAGATACCTACACCACCTCCCAAAAGG

Protein sequence

MASLMAVRRARTPILISFFFKVRSSLPSRFTFSCGNQTETLIKALCTSATPNDFSNFPPPPQQRSSSDPRFLQGQWGSPNQVHSRSGNFNNQSFSEFQNRDYVPQGSSNNQMNYRSENQSSHPNPGFSRQGQGYSQAGNPNSWNPPNQSYPQYQNPPQPNAQHFNYQQQRSPNQWNNQNQGYPQFGRPGQGNPQVENSYQLNNQAGVQGHGSQNQALNPSVSPTDELRRFCEEGKIKEAVELLKEGVKADADCFLVLFDLCGKSNSFDNAKELIVDLGPTKAASSKKIPTPPPKR
Homology
[Close]
BLAST of Cp4.1LG04g08140 vs. Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-06
Identity = 85/287 (29.62%), Postives = 123/287 (42.86%), Query Frame = 1 

Query: 1   MASLMAVRRARTP--ILISFFFKVRSSLP---SRFTFSCGNQTETLIKALCTSATPNDFS 60
           M+SLMA+R ART   + I    ++RSS P   S+F FS G      IK L TSA  ND+ 
Sbjct: 1   MSSLMAIRCARTQNIVTIGSLLQLRSSFPRLSSQFHFS-GTLNSIPIKHLSTSAAANDYH 60

Query: 61  NFPP---PPQQRSSSDPRFLQGQWGSPNQVHSRSGNFNNQSFSEFQNRDYVPQGSSNNQM 120
             P    P Q +    P+    Q    NQ ++      + +    Q+   +PQ    N  
Sbjct: 61  QNPQSGSPSQHQRPYPPQSFDSQ----NQTNTNQRVPQSPNQWSTQHGGQIPQYGGQNPQ 120

Query: 121 NYRSENQSSHPNPGFSRQGQGYSQAGNPNSWNPPNQSYPQY--QNP----PQPNAQHFNY 180
           +          NP   +QG   SQ G  N  +  ++  PQY  Q P    P  N Q+ N 
Sbjct: 121 HGGQRPPYGGQNP---QQGGQMSQYGGHNPQHGGHR--PQYGGQRPQYGGPGNNYQNQNV 180

Query: 181 QQQRSPNQWNNQNQGYPQFGRPGQGNPQVENSYQLNNQAGVQGHGSQNQALNPSVSPTDE 240
           QQ      +  Q Q  PQ  R    +P   N                  A  PSV   +E
Sbjct: 181 QQSNQSQYYTPQQQQQPQPPRSSNQSPNQMNEV----------------APPPSV---EE 240

Query: 241 LRRFCEEGKIKEAVELLKEGVKADADCFLVLFDLCGKSNSFDNAKEL 274
           + R C+    K+A+ELL +G   D +CF++LF+ C    S +++K++
Sbjct: 241 VMRLCQRRLYKDAIELLDKGAMPDRECFVLLFESCANLKSLEHSKKV 258

[Close]
BLAST of Cp4.1LG04g08140 vs. TrEMBL
Match: A0A0A0K6L3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073730 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 7.6e-53
Identity = 141/256 (55.08%), Postives = 160/256 (62.50%), Query Frame = 1 

Query: 1   MASLMAVRRARTPILISFFFKVRSSLPSRFTFSCGNQTETLIKALCTSATPNDFSNFPPP 60
           MASLMAVRRARTPI++S F KVR  L S FTF+  NQTETLIK L TSA PNDFSNFP  
Sbjct: 1   MASLMAVRRARTPIIVSSF-KVRYPLSSCFTFTFRNQTETLIKTLSTSAIPNDFSNFPSS 60

Query: 61  PQQRSSSDPRFLQGQWGSPNQVHSRSGNFNNQSFSEFQNRDYVPQGSSNNQMNYRSENQS 120
           PQQ SSS P + Q QWGSP+QV+  S NFN+QSFSEFQNRDY  QGS  NQ+NYRS++QS
Sbjct: 61  PQQPSSSSPSYRQPQWGSPSQVNPPSENFNHQSFSEFQNRDYAQQGSHGNQLNYRSQHQS 120

Query: 121 SHPNPGFSRQGQGYSQAGNPNSWN-----------------------------PPNQSYP 180
             PNPGFSRQGQ YSQ G  NSWN                             PPNQSYP
Sbjct: 121 PQPNPGFSRQGQSYSQVGKTNSWNPPNQSSQYQNPSQPPPNQSFPQYQNPSQPPPNQSYP 180

Query: 181 QYQNPPQPNAQHFNYQQQRSPNQWNNQNQGYPQFGRPGQGNPQVENSY-QLNNQAGVQGH 227
           QYQNP QPNA +  Y Q ++P+Q    NQ YPQ+  P Q  P    SY Q  N +    +
Sbjct: 181 QYQNPSQPNAPNQRYPQYQNPSQ-PPPNQSYPQYQNPSQ--PPPNQSYPQYQNPSQPPPN 240

[Close]
BLAST of Cp4.1LG04g08140 vs. TrEMBL
Match: M5VN21_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002958mg PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.1e-43
Identity = 137/302 (45.36%), Postives = 174/302 (57.62%), Query Frame = 1 

Query: 1   MASLMAVRRARTPILISFFFKVRSSLPSRFTFSCGN----------QTETLIKALCTSAT 60
           MASLMA+RRAR+P L S FFKVR    S F FS G+          +T T+ K+L TSA 
Sbjct: 1   MASLMAIRRARSPAL-SPFFKVRPLHLSHFAFSHGSNTIAINITNLETLTIAKSLSTSAV 60

Query: 61  PNDFSNFPPPPQQRSSSDPRFLQGQWGSPNQVHSRSGNFNNQSFSEFQNRDYVPQGSSNN 120
           PN++   PPP QQ   SDPR    Q  +PNQ  ++   + N +    Q ++  P    N 
Sbjct: 61  PNEYQR-PPPQQQPPPSDPRAFDDQ-ANPNQWAAQGQGYGNSNQWNPQTQNQTPNNQYNQ 120

Query: 121 QMNYRSENQS-----------SHPNPGF---SRQGQGYSQAGNPNSWNPPNQSYPQYQNP 180
             +Y  +NQS           S PN G+   + Q Q Y Q GN N W+P  QS PQYQNP
Sbjct: 121 NQSYPGQNQSYPGRGYPNQAPSFPNRGYPNQNNQNQSYPQRGNSNEWSPQVQSPPQYQNP 180

Query: 181 PQPNAQHF-NYQQQRSPNQWNNQNQGYPQFGRPGQGNPQVENSYQLNNQAGVQGHGSQNQ 240
            Q N     ++QQ RSPNQWNN NQGY Q   P Q +PQ +N  Q +N      + + NQ
Sbjct: 181 NQVNPPPSPSFQQPRSPNQWNNPNQGYQQPRNPNQWSPQAQNPAQWSN------NNNNNQ 240

Query: 241 ALN--PSVSP--TDELRRFCEEGKIKEAVELL-KEGVKADADCFLVLFDLCGKSNSFDNA 273
           A+N  P V P   D+LRR C+EGK KEA+EL+ KEGVKADADCF  LF+LCG+  S ++A
Sbjct: 241 AVNQTPVVVPPSIDDLRRLCQEGKAKEALELMDKEGVKADADCFQSLFELCGRLKSIEDA 293

[Close]
BLAST of Cp4.1LG04g08140 vs. TrEMBL
Match: W9S6A2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027540 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.5e-40
Identity = 133/294 (45.24%), Postives = 166/294 (56.46%), Query Frame = 1 

Query: 1   MASLMAVRRARTPILISFFFKVRSSLPSRFTFSCGN--QTETLIKALCTSATPNDFSNFP 60
           MASLMA+RRAR    IS FFKVR   PS F     N    +TL+K L TSA  +++ + P
Sbjct: 1   MASLMAIRRARCQ-KISSFFKVRPLHPSHFASINANNHNLQTLVKTLSTSAFTDEYQS-P 60

Query: 61  PPPQQRSSSDPRFL--------QG----------QWGSPNQVHSRSGNFNNQSFSEFQNR 120
           P P     SDPR +        QG          QW S NQ+ +   ++ NQ+  ++ NR
Sbjct: 61  PTP-----SDPRAVPHHGKPQRQGYPQTGNPNPNQWNSQNQISNNQFSYQNQN-QDYSNR 120

Query: 121 DYVPQGSSNNQMNYRSENQSSHPNPGFSRQGQGYSQAGNPNSWNPPNQSYPQYQNPPQPN 180
            Y P    N   N+ +     +PNP    Q Q Y Q GN    NP NQS+PQYQNP Q N
Sbjct: 121 GYYP----NQGQNFPNR---GYPNP---VQNQSYPQHGNAQR-NPQNQSFPQYQNPNQTN 180

Query: 181 AQHFNYQQQRSPNQWNNQNQGYPQFGRPGQGNPQVENSYQLNNQAGVQGHGSQNQALNPS 240
            Q+ N+QQ RSPNQWNNQNQ YPQ   P Q N QV++  Q   QA      S NQ  +  
Sbjct: 181 IQNPNFQQPRSPNQWNNQNQAYPQRANPNQRNQQVQSPNQRTPQA-----QSANQITDVK 240

Query: 241 VSPTDELRRFCEEGKIKEAVELL-KEGVKADADCFLVLFDLCGKSNSFDNAKEL 274
           ++   +LR  C EGK+KEA+EL+ KEGVKADADCF  LF+LCGK  S +NAK +
Sbjct: 241 LTSISDLRTLCREGKVKEAIELMDKEGVKADADCFCALFELCGKLKSLENAKRV 270

[Close]
BLAST of Cp4.1LG04g08140 vs. TrEMBL
Match: F6HQB8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00540 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.1e-31
Identity = 122/300 (40.67%), Postives = 155/300 (51.67%), Query Frame = 1 

Query: 1   MASLMAVRRARTPILISFFFKVRSSLPSRFTFSCGNQTETLIKALCTSATPNDFSNFPPP 60
           MASL+++RRARTP L SF  KV S   S F F       TL K L TSA PND+      
Sbjct: 1   MASLLSIRRARTP-LFSFLSKVPSPYSSHFIF-------TLTKTLSTSAVPNDYQR---- 60

Query: 61  PQQRSSSDPRFLQGQWGSPNQVHSRSGNFNNQSFSEFQNRDYVPQGSSNNQMNYRSENQS 120
           PQQ+  S+PR  Q Q        + S N+N+Q+    Q++ Y PQ      MNY  +NQS
Sbjct: 61  PQQQPPSEPRDFQDQ-------RNPSYNWNSQT----QSQSY-PQ-----HMNYGDQNQS 120

Query: 121 SHPNPGFSRQGQGYSQAGNPNSWNPPNQSYPQYQNPPQPNAQH------------FNYQQ 180
            +PN G+  QGQGY Q  NPN WN    +YPQ QNP +PN Q+              Y Q
Sbjct: 121 -YPNRGYPNQGQGYPQHENPNQWNRQTPTYPQPQNPSRPNHQNQYYPPTGNPSLGQGYPQ 180

Query: 181 QRSPNQWNNQNQGYPQFGRPGQGNPQVENSYQLNNQAGV---QGHGSQNQALNPSVSPTD 240
           QRSPNQWN Q+Q         Q  PQ  +    +NQ      QG  SQ    NP+ +   
Sbjct: 181 QRSPNQWNPQHQNPSHLNNQNQNYPQPGSRNLPSNQNQSYPHQGSPSQWNNQNPNQAQIV 240

Query: 241 E------------LRRFCEEGKIKEAVELLKEGVKADADCFLVLFDLCGKSNSFDNAKEL 274
           E            L   C+EGK+KEAVEL+++GV+ADA CF  LF+ CG     + AK++
Sbjct: 241 ENQVSHAPPSVADLMNLCQEGKVKEAVELMEKGVRADAQCFYALFNSCGSPKLLEEAKKV 270

[Close]
BLAST of Cp4.1LG04g08140 vs. TrEMBL
Match: A0A0D2S877_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G043300 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.0e-30
Identity = 121/289 (41.87%), Postives = 153/289 (52.94%), Query Frame = 1 

Query: 1   MASLMAVRRAR--TPILISFFFKVRSSLPSRFTFSCG-NQTETL---IKALCTSATPNDF 60
           MASLMA+RR R  TP   S   KVR +  S FT +   ++T+ L   +K+L TSA PN++
Sbjct: 1   MASLMAIRRGRSSTPPFTSLLTKVRLN-SSHFTSNRHFDRTQILSLSLKSLSTSAIPNEY 60

Query: 61  SNFPPPPQQRS---SSDPRFLQGQWGSPNQVHSRSGNFNNQSFSEFQNRDYVPQG---SS 120
              PP  Q +    SSDPR   GQ         R+ NFNNQ   + Q   +  Q    S 
Sbjct: 61  QRPPPHHQNQQPPPSSDPRVFHGQ---------RNPNFNNQWNPQNQGYHHPQQQGGVSD 120

Query: 121 NNQMNYRSENQSSHPNPGFSRQGQGYSQAGNPNSWNPP-NQSYPQYQNPPQPNAQHFNYQ 180
           NNQ N +              QGQGYSQ G PN WNP  N+SYPQY     PNA   N Q
Sbjct: 121 NNQWNPQQN------------QGQGYSQRGRPNQWNPQQNRSYPQY-----PNANPMNTQ 180

Query: 181 QQRSPNQWNNQNQG---YPQFGRPGQGNPQVENSYQLNNQAGVQGHGSQNQALNPSVSPT 240
             RSPNQW+NQNQG   +PQ     +  PQ +N  Q + + G QG   ++    P  S  
Sbjct: 181 MPRSPNQWSNQNQGQGYHPQGRNFNERAPQSQNPNQFSRERGNQGLMVEHVQAEPVPSLV 240

Query: 241 DELRRFCEEGKIKEAVELLKEGVKADADCFLVLFDLCGKSNSFDNAKEL 274
           D L R C EGK+KEA+EL+ +GVK DA CF  LF L     S ++AK++
Sbjct: 241 D-LTRLCHEGKVKEAIELMDKGVKGDASCFSYLFGLICNPKSLEDAKKV 261

[Close]
BLAST of Cp4.1LG04g08140 vs. TAIR10
Match: AT2G15690.1 (AT2G15690.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 8.7e-08
Identity = 85/287 (29.62%), Postives = 123/287 (42.86%), Query Frame = 1 

Query: 1   MASLMAVRRARTP--ILISFFFKVRSSLP---SRFTFSCGNQTETLIKALCTSATPNDFS 60
           M+SLMA+R ART   + I    ++RSS P   S+F FS G      IK L TSA  ND+ 
Sbjct: 1   MSSLMAIRCARTQNIVTIGSLLQLRSSFPRLSSQFHFS-GTLNSIPIKHLSTSAAANDYH 60

Query: 61  NFPP---PPQQRSSSDPRFLQGQWGSPNQVHSRSGNFNNQSFSEFQNRDYVPQGSSNNQM 120
             P    P Q +    P+    Q    NQ ++      + +    Q+   +PQ    N  
Sbjct: 61  QNPQSGSPSQHQRPYPPQSFDSQ----NQTNTNQRVPQSPNQWSTQHGGQIPQYGGQNPQ 120

Query: 121 NYRSENQSSHPNPGFSRQGQGYSQAGNPNSWNPPNQSYPQY--QNP----PQPNAQHFNY 180
           +          NP   +QG   SQ G  N  +  ++  PQY  Q P    P  N Q+ N 
Sbjct: 121 HGGQRPPYGGQNP---QQGGQMSQYGGHNPQHGGHR--PQYGGQRPQYGGPGNNYQNQNV 180

Query: 181 QQQRSPNQWNNQNQGYPQFGRPGQGNPQVENSYQLNNQAGVQGHGSQNQALNPSVSPTDE 240
           QQ      +  Q Q  PQ  R    +P   N                  A  PSV   +E
Sbjct: 181 QQSNQSQYYTPQQQQQPQPPRSSNQSPNQMNEV----------------APPPSV---EE 240

Query: 241 LRRFCEEGKIKEAVELLKEGVKADADCFLVLFDLCGKSNSFDNAKEL 274
           + R C+    K+A+ELL +G   D +CF++LF+ C    S +++K++
Sbjct: 241 VMRLCQRRLYKDAIELLDKGAMPDRECFVLLFESCANLKSLEHSKKV 258

[Close]
BLAST of Cp4.1LG04g08140 vs. NCBI nr
Match: gi|659109903|ref|XP_008454941.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g15690 [Cucumis melo])

HSP 1 Score: 350.1 bits (897), Expect = 3.7e-93
Identity = 196/303 (64.69%), Postives = 217/303 (71.62%), Query Frame = 1 

Query: 1   MASLMAVRRARTPILISFFFKVRSSLPSRFTFSCGNQTETLIKALCTSATPNDFSNFPPP 60
           MASLMAVRR RTPI +S FFKVR  L S FTF+  NQTETLIK L TSA P+DFSNFP  
Sbjct: 1   MASLMAVRRVRTPITVSSFFKVRYPLSSSFTFTFRNQTETLIKTLSTSAIPSDFSNFPSS 60

Query: 61  PQQRSSSDPRFLQGQWGSPNQVHSRSGNFNNQSFSEFQNRDYVPQGSSNNQMNYRSENQS 120
           PQQ SSS P + Q QWGSP+QV+  S NFN QSFSEFQN DY  QG+ +NQ+NYRS++QS
Sbjct: 61  PQQPSSSSPPYRQPQWGSPSQVNPPSENFNRQSFSEFQNHDYAQQGTPSNQLNYRSQHQS 120

Query: 121 SHPNPGFSRQGQGYSQAGNPNSW----------------NP----------------PNQ 180
             PNPGFSR+GQ Y+Q G  NSW                NP                PNQ
Sbjct: 121 PQPNPGFSREGQSYTQVGKTNSWNPPNQSYPQYQNPSQPNPPNQSYPQYQNPSQPNPPNQ 180

Query: 181 SYPQYQNPPQPNAQHFNYQQQRSPNQWNNQNQGYPQFGRPGQGNPQVENSYQLNNQAGVQ 240
           SYPQYQNP QPN  +FNYQQQR PNQWNNQNQG+PQFGR    NPQ ENS QLNNQA +Q
Sbjct: 181 SYPQYQNPSQPNPPNFNYQQQRGPNQWNNQNQGHPQFGRSEHRNPQPENSNQLNNQAEIQ 240

Query: 241 GHGSQNQALNPSVSPTDELRRFCEEGKIKEAVELLKEGVKADADCFLVLFDLCGKSNSFD 272
            HG+QNQA N  VSP DELRRFC EGK+KEAVELLK+GVKAD DCF +LF+LCGKS S D
Sbjct: 241 RHGTQNQAPNALVSPIDELRRFCGEGKLKEAVELLKQGVKADVDCFHLLFELCGKSKSLD 300

[Close]
BLAST of Cp4.1LG04g08140 vs. NCBI nr
Match: gi|778725128|ref|XP_011658903.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 141/256 (55.08%), Postives = 160/256 (62.50%), Query Frame = 1 

Query: 1   MASLMAVRRARTPILISFFFKVRSSLPSRFTFSCGNQTETLIKALCTSATPNDFSNFPPP 60
           MASLMAVRRARTPI++S F KVR  L S FTF+  NQTETLIK L TSA PNDFSNFP  
Sbjct: 1   MASLMAVRRARTPIIVSSF-KVRYPLSSCFTFTFRNQTETLIKTLSTSAIPNDFSNFPSS 60

Query: 61  PQQRSSSDPRFLQGQWGSPNQVHSRSGNFNNQSFSEFQNRDYVPQGSSNNQMNYRSENQS 120
           PQQ SSS P + Q QWGSP+QV+  S NFN+QSFSEFQNRDY  QGS  NQ+NYRS++QS
Sbjct: 61  PQQPSSSSPSYRQPQWGSPSQVNPPSENFNHQSFSEFQNRDYAQQGSHGNQLNYRSQHQS 120

Query: 121 SHPNPGFSRQGQGYSQAGNPNSWN-----------------------------PPNQSYP 180
             PNPGFSRQGQ YSQ G  NSWN                             PPNQSYP
Sbjct: 121 PQPNPGFSRQGQSYSQVGKTNSWNPPNQSSQYQNPSQPPPNQSFPQYQNPSQPPPNQSYP 180

Query: 181 QYQNPPQPNAQHFNYQQQRSPNQWNNQNQGYPQFGRPGQGNPQVENSY-QLNNQAGVQGH 227
           QYQNP QPNA +  Y Q ++P+Q    NQ YPQ+  P Q  P    SY Q  N +    +
Sbjct: 181 QYQNPSQPNAPNQRYPQYQNPSQ-PPPNQSYPQYQNPSQ--PPPNQSYPQYQNPSQPPPN 240

[Close]
BLAST of Cp4.1LG04g08140 vs. NCBI nr
Match: gi|700188704|gb|KGN43937.1| (hypothetical protein Csa_7G073730 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 141/256 (55.08%), Postives = 160/256 (62.50%), Query Frame = 1 

Query: 1   MASLMAVRRARTPILISFFFKVRSSLPSRFTFSCGNQTETLIKALCTSATPNDFSNFPPP 60
           MASLMAVRRARTPI++S F KVR  L S FTF+  NQTETLIK L TSA PNDFSNFP  
Sbjct: 1   MASLMAVRRARTPIIVSSF-KVRYPLSSCFTFTFRNQTETLIKTLSTSAIPNDFSNFPSS 60

Query: 61  PQQRSSSDPRFLQGQWGSPNQVHSRSGNFNNQSFSEFQNRDYVPQGSSNNQMNYRSENQS 120
           PQQ SSS P + Q QWGSP+QV+  S NFN+QSFSEFQNRDY  QGS  NQ+NYRS++QS
Sbjct: 61  PQQPSSSSPSYRQPQWGSPSQVNPPSENFNHQSFSEFQNRDYAQQGSHGNQLNYRSQHQS 120

Query: 121 SHPNPGFSRQGQGYSQAGNPNSWN-----------------------------PPNQSYP 180
             PNPGFSRQGQ YSQ G  NSWN                             PPNQSYP
Sbjct: 121 PQPNPGFSRQGQSYSQVGKTNSWNPPNQSSQYQNPSQPPPNQSFPQYQNPSQPPPNQSYP 180

Query: 181 QYQNPPQPNAQHFNYQQQRSPNQWNNQNQGYPQFGRPGQGNPQVENSY-QLNNQAGVQGH 227
           QYQNP QPNA +  Y Q ++P+Q    NQ YPQ+  P Q  P    SY Q  N +    +
Sbjct: 181 QYQNPSQPNAPNQRYPQYQNPSQ-PPPNQSYPQYQNPSQ--PPPNQSYPQYQNPSQPPPN 240

[Close]
BLAST of Cp4.1LG04g08140 vs. NCBI nr
Match: gi|595798576|ref|XP_007201410.1| (hypothetical protein PRUPE_ppa002958mg [Prunus persica])

HSP 1 Score: 182.6 bits (462), Expect = 1.0e-42
Identity = 137/302 (45.36%), Postives = 174/302 (57.62%), Query Frame = 1 

Query: 1   MASLMAVRRARTPILISFFFKVRSSLPSRFTFSCGN----------QTETLIKALCTSAT 60
           MASLMA+RRAR+P L S FFKVR    S F FS G+          +T T+ K+L TSA 
Sbjct: 1   MASLMAIRRARSPAL-SPFFKVRPLHLSHFAFSHGSNTIAINITNLETLTIAKSLSTSAV 60

Query: 61  PNDFSNFPPPPQQRSSSDPRFLQGQWGSPNQVHSRSGNFNNQSFSEFQNRDYVPQGSSNN 120
           PN++   PPP QQ   SDPR    Q  +PNQ  ++   + N +    Q ++  P    N 
Sbjct: 61  PNEYQR-PPPQQQPPPSDPRAFDDQ-ANPNQWAAQGQGYGNSNQWNPQTQNQTPNNQYNQ 120

Query: 121 QMNYRSENQS-----------SHPNPGF---SRQGQGYSQAGNPNSWNPPNQSYPQYQNP 180
             +Y  +NQS           S PN G+   + Q Q Y Q GN N W+P  QS PQYQNP
Sbjct: 121 NQSYPGQNQSYPGRGYPNQAPSFPNRGYPNQNNQNQSYPQRGNSNEWSPQVQSPPQYQNP 180

Query: 181 PQPNAQHF-NYQQQRSPNQWNNQNQGYPQFGRPGQGNPQVENSYQLNNQAGVQGHGSQNQ 240
            Q N     ++QQ RSPNQWNN NQGY Q   P Q +PQ +N  Q +N      + + NQ
Sbjct: 181 NQVNPPPSPSFQQPRSPNQWNNPNQGYQQPRNPNQWSPQAQNPAQWSN------NNNNNQ 240

Query: 241 ALN--PSVSP--TDELRRFCEEGKIKEAVELL-KEGVKADADCFLVLFDLCGKSNSFDNA 273
           A+N  P V P   D+LRR C+EGK KEA+EL+ KEGVKADADCF  LF+LCG+  S ++A
Sbjct: 241 AVNQTPVVVPPSIDDLRRLCQEGKAKEALELMDKEGVKADADCFQSLFELCGRLKSIEDA 293

[Close]
BLAST of Cp4.1LG04g08140 vs. NCBI nr
Match: gi|645261900|ref|XP_008236515.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g15690 [Prunus mume])

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 135/297 (45.45%), Postives = 171/297 (57.58%), Query Frame = 1 

Query: 1   MASLMAVRRARTPILISFFFKVRSSLPSRFTFSCGNQTETL----------IKALCTSAT 60
           MASLMA+RRAR P L S FFKVR    S F FS G+ T T+           K L TSA 
Sbjct: 1   MASLMAIRRARCPAL-SPFFKVRPLHLSHFAFSHGSNTTTINITNLETLTIAKTLSTSAV 60

Query: 61  PNDFSNFPPPPQQRSSSDPRFLQ-----GQWGSPNQVHSRSGNFNNQSFSEFQNRDYVPQ 120
           PN++   PPP QQ   SDPR         QW    Q +  S  ++ Q+ ++  N  Y  Q
Sbjct: 61  PNEYQR-PPPQQQPPPSDPRAFDDQANTNQWAPQGQGYGNSNQWSPQTQNQRPNNQYNYQ 120

Query: 121 GSSNNQMNYRSENQSSH-PNPGF---SRQGQGYSQAGNPNSWNPPNQSYPQYQNPPQPNA 180
           G + +       NQ+ + PN G+   + Q Q Y Q GN N W+P  QS PQYQNP Q N+
Sbjct: 121 GQNQSYPGRGYPNQAPNFPNRGYPNQNNQNQSYPQRGNSNEWSPQVQSPPQYQNPNQVNS 180

Query: 181 QHF-NYQQQRSPNQWNNQNQGYPQFGRPGQGNPQVENSYQLNNQAGVQGHGSQNQALN-- 240
               ++QQ RSPNQWNN NQGY Q   P Q +PQ +N  Q +N      + + NQA+N  
Sbjct: 181 PPSPSFQQPRSPNQWNNPNQGYQQPRNPNQWSPQAQNPAQWSN------NNNNNQAVNQT 240

Query: 241 PSVSP--TDELRRFCEEGKIKEAVELL-KEGVKADADCFLVLFDLCGKSNSFDNAKE 273
           P V P   D+LRR C+EGK KEA+EL+ KEGVKADADCF  LF+LCG+  S ++AK+
Sbjct: 241 PVVVPPSLDDLRRLCQEGKAKEALELMDKEGVKADADCFQSLFELCGRLKSIEDAKK 289

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g08140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP153_ARATH1.5e-0629.62Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG04g08140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6L3_CUCSA7.6e-5355.08Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073730 PE=4 SV=1[more]
M5VN21_PRUPE7.1e-4345.36Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002958mg PE=4 SV=1[more]
W9S6A2_9ROSA2.5e-4045.24Uncharacterized protein OS=Morus notabilis GN=L484_027540 PE=4 SV=1[more]
F6HQB8_VITVI2.1e-3140.67Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00540 PE=4 SV=... [more]
A0A0D2S877_GOSRA4.0e-3041.87Uncharacterized protein OS=Gossypium raimondii GN=B456_013G043300 PE=4 SV=1[more]
BLAST of Cp4.1LG04g08140 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G15690.18.7e-0829.62 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG04g08140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109903|ref|XP_008454941.1|3.7e-9364.69PREDICTED: pentatricopeptide repeat-containing protein At2g15690 [Cucumis melo][more]
gi|778725128|ref|XP_011658903.1|1.1e-5255.08PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Cucumis s... [more]
gi|700188704|gb|KGN43937.1|1.1e-5255.08hypothetical protein Csa_7G073730 [Cucumis sativus][more]
gi|595798576|ref|XP_007201410.1|1.0e-4245.36hypothetical protein PRUPE_ppa002958mg [Prunus persica][more]
gi|645261900|ref|XP_008236515.1|1.5e-4145.45PREDICTED: pentatricopeptide repeat-containing protein At2g15690 [Prunus mume][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g08140.1Cp4.1LG04g08140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g08140CmaCh11G017550Cucurbita maxima (Rimu)cmacpeB154
Cp4.1LG04g08140CmoCh11G013570Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g08140CmoCh19G006260Cucurbita moschata (Rifu)cmocpeB494
Cp4.1LG04g08140Cla016006Watermelon (97103) v1cpewmB665
Cp4.1LG04g08140MELO3C018444Melon (DHL92) v3.5.1cpemeB604
Cp4.1LG04g08140ClCG02G005870Watermelon (Charleston Gray)cpewcgB590
Cp4.1LG04g08140Lsi03G004860Bottle gourd (USVL1VR-Ls)cpelsiB543
Cp4.1LG04g08140MELO3C018444.2Melon (DHL92) v3.6.1cpemedB715
Cp4.1LG04g08140CsaV3_7G008660Cucumber (Chinese Long) v3cpecucB0868
Cp4.1LG04g08140Bhi05G000997Wax gourdcpewgoB0855
Cp4.1LG04g08140CsGy7G007260Cucumber (Gy14) v2cgybcpeB969
Cp4.1LG04g08140Carg20368Silver-seed gourdcarcpeB0764
Cp4.1LG04g08140Carg22062Silver-seed gourdcarcpeB0296
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g08140Wax gourdcpewgoB0841
Cp4.1LG04g08140Wax gourdcpewgoB0860
Cp4.1LG04g08140Cucurbita pepo (Zucchini)cpecpeB269
Cp4.1LG04g08140Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG04g08140Cucurbita pepo (Zucchini)cpecpeB417
Cp4.1LG04g08140Cucurbita pepo (Zucchini)cpecpeB500
Cp4.1LG04g08140Cucumber (Gy14) v1cgycpeB0222
Cp4.1LG04g08140Cucumber (Gy14) v1cgycpeB0602
Cp4.1LG04g08140Cucurbita maxima (Rimu)cmacpeB539
Cp4.1LG04g08140Cucurbita maxima (Rimu)cmacpeB749
Cp4.1LG04g08140Cucurbita maxima (Rimu)cmacpeB884
Cp4.1LG04g08140Cucurbita moschata (Rifu)cmocpeB703
Cp4.1LG04g08140Cucurbita moschata (Rifu)cmocpeB822
Cp4.1LG04g08140Wild cucumber (PI 183967)cpecpiB689
Cp4.1LG04g08140Wild cucumber (PI 183967)cpecpiB697
Cp4.1LG04g08140Cucumber (Chinese Long) v2cpecuB686
Cp4.1LG04g08140Cucumber (Chinese Long) v2cpecuB695
Cp4.1LG04g08140Bottle gourd (USVL1VR-Ls)cpelsiB536
Cp4.1LG04g08140Watermelon (Charleston Gray)cpewcgB588
Cp4.1LG04g08140Watermelon (Charleston Gray)cpewcgB611
Cp4.1LG04g08140Watermelon (Charleston Gray)cpewcgB624
Cp4.1LG04g08140Watermelon (97103) v1cpewmB656
Cp4.1LG04g08140Watermelon (97103) v1cpewmB663
Cp4.1LG04g08140Melon (DHL92) v3.5.1cpemeB644
Cp4.1LG04g08140Cucumber (Gy14) v2cgybcpeB237
Cp4.1LG04g08140Melon (DHL92) v3.6.1cpemedB746
Cp4.1LG04g08140Melon (DHL92) v3.6.1cpemedB772
Cp4.1LG04g08140Silver-seed gourdcarcpeB0529
Cp4.1LG04g08140Cucumber (Chinese Long) v3cpecucB0857