Lsi03G004860 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi03G004860
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPentatricopeptide repeat-containing protein
Locationchr03 : 5560134 .. 5561924 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTCTCATGGCGGTCCGGCGTGCTCGAACCCCCATTCTTATCTCCTCCTTCTTCAAGGTACGGTCTCCTCTCCCTTCTCGTTTCACCTTCTCTTGCGTAAACCAGACAGAGACCCTAATCAAAGCCCTAAGCACCTCGGCAATCCCTAACGATTTCTCAAATTTTCCTCCTCCTCCGCCGCCGCAACAACCTTCTTCGTCTGACCCTCGATATCGTCAGGCCCAGTGGGGCTCGCCGAGCCAGGTTCATCCTCCGAGTGGAAATTTTAACAACCAGTCGTTCTCGGAGTTTCAGAATCGCGATTATGGTCAACAGGGAAGCCCTAGTAATCAATCGAATTATCGGAGTCAGAATCAGAGCCCTCAACCCAATCCTGGATTTTCCCGGCAGGGTCAGAGCTATACTCAAGCCCCTAATTCGTGGAATCCTCCAAATCAAAGCTACCCACAGTATCAAAATCCTTCGCAGCCGAACCCTCAAAATTTCAATTATCAGCAACAAAGAGGCCCTAACCAATGGAACAATCAAAATCGGGGATACCCACAATCTGGAAGGCCTGAACAGCGTAACCCACAAGTAGAGAATGCTAATCAGTTGAATAATCAGGCTGGGATTCAAAGGCATGGTGCTCAAAATCAAGCACCAAGTGCCCTTGTATCTCCTATTGATGAACTACGGCGCTTTTGTGGAGAAGGGAAAATGAAAGAAGCTGTTGAATTATTGAAAGAAGGTGTTAAAGCTGATGCTGATTGTTTCCATTTGTTATTTGAACTATGTGGGAAGTCCAAGTCATTTGACAATGCTAAACTAGTTCATGATTACTTTTTACAGTCAACTTGTAGAAGTGATCTGCAACTGAATAATAAAGTGCTTGAGATGTATGGGAGATGTGGAAGCATGAGTGATGCACGGAGAGTGTTCGACCATATGCCTGATAGAAATATTGATTCTTGGCATTTGATGATGAAAGGATATGCTGATAATGGATTGGGTGATGAGGGTCTGGAGTTATTTGAGAATATGAAGCAGCTAGGGTTGCAACCCAATTCACAAACTTTCCTTTTTGTTATGTCAGCTTGTGCTAGTGCGAATGCTGTGGAAGAAGGATTTCTGTACTTTGAGTCAATGAAAAACGATTATCATATTACCCCTGACATGGATCATTATTTGGGGCTTTTAGGTATTCTTGGAGAACCTGGACACATCAATGAGGCTTTCGAGTATGTTGAGAAACTGCCAATGGAGCCCACAGTCGAGGTATGGGAGACTTTGAAGAACTATGCTAGAATTCATGGAGATGTTGATCTTGAGGACTATGCAGAGGAGCTAATTGTTGATCTGGACCCGACAAAAGCTGTCTCTAATGTGATATCGACGCCACCTCCCAAAAAACGGTCTGCAATTAGCATGCTTGATGGGAAGAACAGGATTGGTGAATTCAGAAATCCAACTCTCTACAAAGATGACGAAAAATTAAAGGCTTTGAAGGCAATGAAAGAACAAGGGTATGTGCCAGATACTAGATATGTTCTTCACGATATCGATCAAGAGGCCAAAGAGCAGGCATTGCTGTATCATAGTGAACGATTGGCAATCGCATACGGACTGATCAGTACTCCAGCACGAACGCCTCTTAGGATCATTAAGAACTTGAGGATCTGTGGTGACTGTCACAATGCCATAAAAATCATGTCTAGAATTGTTGGGAGAGAGTTAATTGTAAGGGACAACAAACGGTTCCATCATTTTAAGGATGGGAAATGTTCTTGTGGGGATTACTGGTAA

mRNA sequence

ATGGCGTCTCTCATGGCGGTCCGGCGTGCTCGAACCCCCATTCTTATCTCCTCCTTCTTCAAGGTACGGTCTCCTCTCCCTTCTCGTTTCACCTTCTCTTGCGTAAACCAGACAGAGACCCTAATCAAAGCCCTAAGCACCTCGGCAATCCCTAACGATTTCTCAAATTTTCCTCCTCCTCCGCCGCCGCAACAACCTTCTTCGTCTGACCCTCGATATCGTCAGGCCCAGTGGGGCTCGCCGAGCCAGGTTCATCCTCCGAGTGGAAATTTTAACAACCAGTCGTTCTCGGAGTTTCAGAATCGCGATTATGGTCAACAGGGAAGCCCTAGTAATCAATCGAATTATCGGAGTCAGAATCAGAGCCCTCAACCCAATCCTGGATTTTCCCGGCAGGGTCAGAGCTATACTCAAGCCCCTAATTCGTGGAATCCTCCAAATCAAAGCTACCCACAGTATCAAAATCCTTCGCAGCCGAACCCTCAAAATTTCAATTATCAGCAACAAAGAGGCCCTAACCAATGGAACAATCAAAATCGGGGATACCCACAATCTGGAAGGCCTGAACAGCGTAACCCACAAGTAGAGAATGCTAATCAGTTGAATAATCAGGCTGGGATTCAAAGGCATGGTGCTCAAAATCAAGCACCAAGTGCCCTTGTATCTCCTATTGATGAACTACGGCGCTTTTGTGGAGAAGGGAAAATGAAAGAAGCTGTTGAATTATTGAAAGAAGGTGTTAAAGCTGATGCTGATTGTTTCCATTTGTTATTTGAACTATGTGGGAAGTCCAAGTCATTTGACAATGCTAAACTAGTTCATGATTACTTTTTACAGTCAACTTGTAGAAGTGATCTGCAACTGAATAATAAAGTGCTTGAGATGTATGGGAGATGTGGAAGCATGAGTGATGCACGGAGAGTGTTCGACCATATGCCTGATAGAAATATTGATTCTTGGCATTTGATGATGAAAGGATATGCTGATAATGGATTGGGTGATGAGGGTCTGGAGTTATTTGAGAATATGAAGCAGCTAGGGTTGCAACCCAATTCACAAACTTTCCTTTTTGTTATGTCAGCTTGTGCTAGTGCGAATGCTGTGGAAGAAGGATTTCTGTACTTTGAGTCAATGAAAAACGATTATCATATTACCCCTGACATGGATCATTATTTGGGGCTTTTAGGTATTCTTGGAGAACCTGGACACATCAATGAGGCTTTCGAGTATGTTGAGAAACTGCCAATGGAGCCCACAGTCGAGGTATGGGAGACTTTGAAGAACTATGCTAGAATTCATGGAGATGTTGATCTTGAGGACTATGCAGAGGAGCTAATTGTTGATCTGGACCCGACAAAAGCTGTCTCTAATGTGATATCGACGCCACCTCCCAAAAAACGGTCTGCAATTAGCATGCTTGATGGGAAGAACAGGATTGGTGAATTCAGAAATCCAACTCTCTACAAAGATGACGAAAAATTAAAGGCTTTGAAGGCAATGAAAGAACAAGGGTATGTGCCAGATACTAGATATGTTCTTCACGATATCGATCAAGAGGCCAAAGAGCAGGCATTGCTGTATCATAGTGAACGATTGGCAATCGCATACGGACTGATCAGTACTCCAGCACGAACGCCTCTTAGGATCATTAAGAACTTGAGGATCTGTGGTGACTGTCACAATGCCATAAAAATCATGTCTAGAATTGTTGGGAGAGAGTTAATTGTAAGGGACAACAAACGGTTCCATCATTTTAAGGATGGGAAATGTTCTTGTGGGGATTACTGGTAA

Coding sequence (CDS)

ATGGCGTCTCTCATGGCGGTCCGGCGTGCTCGAACCCCCATTCTTATCTCCTCCTTCTTCAAGGTACGGTCTCCTCTCCCTTCTCGTTTCACCTTCTCTTGCGTAAACCAGACAGAGACCCTAATCAAAGCCCTAAGCACCTCGGCAATCCCTAACGATTTCTCAAATTTTCCTCCTCCTCCGCCGCCGCAACAACCTTCTTCGTCTGACCCTCGATATCGTCAGGCCCAGTGGGGCTCGCCGAGCCAGGTTCATCCTCCGAGTGGAAATTTTAACAACCAGTCGTTCTCGGAGTTTCAGAATCGCGATTATGGTCAACAGGGAAGCCCTAGTAATCAATCGAATTATCGGAGTCAGAATCAGAGCCCTCAACCCAATCCTGGATTTTCCCGGCAGGGTCAGAGCTATACTCAAGCCCCTAATTCGTGGAATCCTCCAAATCAAAGCTACCCACAGTATCAAAATCCTTCGCAGCCGAACCCTCAAAATTTCAATTATCAGCAACAAAGAGGCCCTAACCAATGGAACAATCAAAATCGGGGATACCCACAATCTGGAAGGCCTGAACAGCGTAACCCACAAGTAGAGAATGCTAATCAGTTGAATAATCAGGCTGGGATTCAAAGGCATGGTGCTCAAAATCAAGCACCAAGTGCCCTTGTATCTCCTATTGATGAACTACGGCGCTTTTGTGGAGAAGGGAAAATGAAAGAAGCTGTTGAATTATTGAAAGAAGGTGTTAAAGCTGATGCTGATTGTTTCCATTTGTTATTTGAACTATGTGGGAAGTCCAAGTCATTTGACAATGCTAAACTAGTTCATGATTACTTTTTACAGTCAACTTGTAGAAGTGATCTGCAACTGAATAATAAAGTGCTTGAGATGTATGGGAGATGTGGAAGCATGAGTGATGCACGGAGAGTGTTCGACCATATGCCTGATAGAAATATTGATTCTTGGCATTTGATGATGAAAGGATATGCTGATAATGGATTGGGTGATGAGGGTCTGGAGTTATTTGAGAATATGAAGCAGCTAGGGTTGCAACCCAATTCACAAACTTTCCTTTTTGTTATGTCAGCTTGTGCTAGTGCGAATGCTGTGGAAGAAGGATTTCTGTACTTTGAGTCAATGAAAAACGATTATCATATTACCCCTGACATGGATCATTATTTGGGGCTTTTAGGTATTCTTGGAGAACCTGGACACATCAATGAGGCTTTCGAGTATGTTGAGAAACTGCCAATGGAGCCCACAGTCGAGGTATGGGAGACTTTGAAGAACTATGCTAGAATTCATGGAGATGTTGATCTTGAGGACTATGCAGAGGAGCTAATTGTTGATCTGGACCCGACAAAAGCTGTCTCTAATGTGATATCGACGCCACCTCCCAAAAAACGGTCTGCAATTAGCATGCTTGATGGGAAGAACAGGATTGGTGAATTCAGAAATCCAACTCTCTACAAAGATGACGAAAAATTAAAGGCTTTGAAGGCAATGAAAGAACAAGGGTATGTGCCAGATACTAGATATGTTCTTCACGATATCGATCAAGAGGCCAAAGAGCAGGCATTGCTGTATCATAGTGAACGATTGGCAATCGCATACGGACTGATCAGTACTCCAGCACGAACGCCTCTTAGGATCATTAAGAACTTGAGGATCTGTGGTGACTGTCACAATGCCATAAAAATCATGTCTAGAATTGTTGGGAGAGAGTTAATTGTAAGGGACAACAAACGGTTCCATCATTTTAAGGATGGGAAATGTTCTTGTGGGGATTACTGGTAA

Protein sequence

MASLMAVRRARTPILISSFFKVRSPLPSRFTFSCVNQTETLIKALSTSAIPNDFSNFPPPPPPQQPSSSDPRYRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYGQQGSPSNQSNYRSQNQSPQPNPGFSRQGQSYTQAPNSWNPPNQSYPQYQNPSQPNPQNFNYQQQRGPNQWNNQNRGYPQSGRPEQRNPQVENANQLNNQAGIQRHGAQNQAPSALVSPIDELRRFCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSFDNAKLVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGYADNGLGDEGLELFENMKQLGLQPNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNVISTPPPKKRSAISMLDGKNRIGEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW
BLAST of Lsi03G004860 vs. Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2)

HSP 1 Score: 504.2 bits (1297), Expect = 1.9e-141
Identity = 303/611 (49.59%), Postives = 377/611 (61.70%), Query Frame = 1

Query: 1   MASLMAVRRARTP--ILISSFFKVRSPLP---SRFTFSCVNQTETLIKALSTSAIPNDFS 60
           M+SLMA+R ART   + I S  ++RS  P   S+F FS    +   IK LSTSA  ND+ 
Sbjct: 1   MSSLMAIRCARTQNIVTIGSLLQLRSSFPRLSSQFHFSGTLNSIP-IKHLSTSAAANDYH 60

Query: 61  NFP----------PPPPPQQPSSSDPRYRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYG 120
             P          P PP    S +     Q    SP+Q     G    Q     QN  +G
Sbjct: 61  QNPQSGSPSQHQRPYPPQSFDSQNQTNTNQRVPQSPNQWSTQHGGQIPQYGG--QNPQHG 120

Query: 121 QQGSPSNQSNYRSQNQSPQPNPGFSRQGQSYTQAPNSWNPPNQSYPQYQNPSQPNPQNFN 180
            Q  P     Y  QN  PQ     S+ G    Q            PQY  P   N QN N
Sbjct: 121 GQRPP-----YGGQN--PQQGGQMSQYGGHNPQHGGHRPQYGGQRPQYGGPGN-NYQNQN 180

Query: 181 YQQQRGPNQWNNQNRGYPQSGRPEQRNPQVENANQLNNQAGIQRHGAQNQAPSALVSPID 240
            QQ      +  Q +  PQ  R   ++P     NQ+N  A           PS     ++
Sbjct: 181 VQQSNQSQYYTPQQQQQPQPPRSSNQSP-----NQMNEVA---------PPPS-----VE 240

Query: 241 ELRRFCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSFDNAKLVHDYFLQSTCRSD 300
           E+ R C     K+A+ELL +G   D +CF LLFE C   KS +++K VHD+FLQS  R D
Sbjct: 241 EVMRLCQRRLYKDAIELLDKGAMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGD 300

Query: 301 LQLNNKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGYADNGLGDEGLELFENMKQ 360
            +LNN V+ M+G C S++DA+RVFDHM D+++DSWHLMM  Y+DNG+GD+ L LFE M +
Sbjct: 301 PKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTK 360

Query: 361 LGLQPNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHIN 420
            GL+PN +TFL V  ACA+   +EE FL+F+SMKN++ I+P  +HYLG+LG+LG+ GH+ 
Sbjct: 361 HGLKPNEETFLTVFLACATVGGIEEAFLHFDSMKNEHGISPKTEHYLGVLGVLGKCGHLV 420

Query: 421 EAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNVISTPPPK 480
           EA +Y+  LP EPT + WE ++NYAR+HGD+DLEDY EEL+VD+DP+KAV N I TPPPK
Sbjct: 421 EAEQYIRDLPFEPTADFWEAMRNYARLHGDIDLEDYMEELMVDVDPSKAVINKIPTPPPK 480

Query: 481 KRSAISMLDGKNRIGEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQAL 540
                +M+  K+RI EFRN T YKD+ K  A K  K   YVPDTR+VLHDIDQEAKEQAL
Sbjct: 481 SFKETNMVTSKSRILEFRNLTFYKDEAKEMAAK--KGVVYVPDTRFVLHDIDQEAKEQAL 540

Query: 541 LYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHF 597
           LYHSERLAIAYG+I TP R  L IIKNLR+CGDCHN IKIMS+I+GR LIVRDNKRFHHF
Sbjct: 541 LYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHF 579

BLAST of Lsi03G004860 vs. Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2)

HSP 1 Score: 313.5 bits (802), Expect = 4.8e-84
Identity = 163/395 (41.27%), Postives = 240/395 (60.76%), Query Frame = 1

Query: 224 IDELRRFCGEGKMKEAVE----LLKEGVKADADCFHLLFELCGKSKSFDNAKLVHDYFLQ 283
           I+E   FC  GK+K+A+     L       D      L ++CG+++    AK VH     
Sbjct: 223 IEEYDAFCKHGKVKKALYTIDILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISA 282

Query: 284 STCRSDLQLNNKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGYADNGLGDEGLEL 343
           S    DL  N+ +LEMY  CG  ++A  VF+ M ++N+++W ++++ +A NG G++ +++
Sbjct: 283 SVSHLDLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDM 342

Query: 344 FENMKQLGLQPNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILG 403
           F   K+ G  P+ Q F  +  AC     V+EG L+FESM  DY I P ++ Y+ L+ +  
Sbjct: 343 FSRFKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYA 402

Query: 404 EPGHINEAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTK------ 463
            PG ++EA E+VE++PMEP V+VWETL N +R+HG+++L DY  E++  LDPT+      
Sbjct: 403 LPGFLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDPTRLNKQSR 462

Query: 464 -----AVSNVISTPPPKKRSAISMLDG-KNRIGEFR--NPTLYKDDEKLKALKAMK---- 523
                  ++ +     KKRS I  L G K+ + EFR  +  L ++DE  + L+ +K    
Sbjct: 463 EGFIPVKASDVEKESLKKRSGI--LHGVKSSMQEFRAGDTNLPENDELFQLLRNLKMHMV 522

Query: 524 EQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHN 583
           E GYV +TR  LHDIDQE+KE  LL HSER+A A  ++++  R P  +IKNLR+C DCHN
Sbjct: 523 EVGYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHN 582

Query: 584 AIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 597
           A+KIMS IVGRE+I RD KRFH  K+G C+C DYW
Sbjct: 583 ALKIMSDIVGREVITRDIKRFHQMKNGACTCKDYW 615

BLAST of Lsi03G004860 vs. Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.0e-83
Identity = 194/525 (36.95%), Postives = 287/525 (54.67%), Query Frame = 1

Query: 108 GSPSNQSNYR-----SQNQSPQPNPGFSRQGQSYTQAPN---SWNPPNQSYPQYQNPSQP 167
           G+P + S++        N   Q   GF  Q  SY Q+ N     NP N+ Y    N +Q 
Sbjct: 41  GNPMDNSSHHIGYVNGFNGGEQSLGGF--QQNSYEQSLNPVSGQNPTNRFYQNGYNRNQS 100

Query: 168 --------NPQNFNYQQQRGPNQWNNQNRGYPQSGRPEQRNPQVENANQLNNQAGIQRHG 227
                   N +N N+Q   G + +     G PQ                 NN  G   H 
Sbjct: 101 YGEHSEIINQRNQNWQSSDGCSSYGTTGNGVPQE----------------NNTGG--NHF 160

Query: 228 AQNQAPSALVSPIDELRRFCGEGKMKEAVELLK----EGVKADADCFHLLFELCGKSKSF 287
            Q+ +     S +DEL   C EGK+K+AVE++K    EG   D      + +LCG +++ 
Sbjct: 161 QQDHSGH---SSLDELDSICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQAL 220

Query: 288 DNAKLVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGY 347
             AK+VH++   S   SD+   N ++EMY  CGS+ DA  VF+ MP+RN+++W  +++ +
Sbjct: 221 QEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCF 280

Query: 348 ADNGLGDEGLELFENMKQLGLQPNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPD 407
           A NG G++ ++ F   KQ G +P+ + F  +  AC     + EG L+FESM  +Y I P 
Sbjct: 281 AKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMYKEYGIIPC 340

Query: 408 MDHYLGLLGILGEPGHINEAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIV 467
           M+HY+ L+ +L EPG+++EA  +VE   MEP V++WETL N +R+HGD+ L D  ++++ 
Sbjct: 341 MEHYVSLVKMLAEPGYLDEALRFVES--MEPNVDLWETLMNLSRVHGDLILGDRCQDMVE 400

Query: 468 DLDPTKAVSNVISTPPPKKRSAI------SMLDGKN------RIGEFRNPTLYKDDEKLK 527
            LD ++      +   P K S +       M  G N        G+   P   ++ E   
Sbjct: 401 QLDASRLNKESKAGLVPVKSSDLVKEKLQRMAKGPNYGIRYMAAGDISRP---ENRELYM 460

Query: 528 ALKAMKEQ----GYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIK 587
           ALK++KE     GYVP ++  LHD+DQE+K++ L  H+ER A     + TPAR+ +R++K
Sbjct: 461 ALKSLKEHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMK 520

Query: 588 NLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 597
           NLR+C DCHNA+K+MS+IVGRELI RD KRFHH KDG CSC +YW
Sbjct: 521 NLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCREYW 537

BLAST of Lsi03G004860 vs. Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.9e-76
Identity = 142/382 (37.17%), Postives = 226/382 (59.16%), Query Frame = 1

Query: 242 LLKEGVKADADCFHLLFELCGKSKSFDNAKLVHDYFLQSTCRSDLQLNNKVLEMYGRCGS 301
           +L++G +     +  LF  C  +   +  K VH Y ++S  +      N +L+MY + GS
Sbjct: 253 MLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGS 312

Query: 302 MSDARRVFDHMPDRNIDSWHLMMKGYADNGLGDEGLELFENMKQLGLQPNSQTFLFVMSA 361
           + DAR++FD +  R++ SW+ ++  YA +G G E +  FE M+++G++PN  +FL V++A
Sbjct: 313 IHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTA 372

Query: 362 CASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEYVEKLPMEPTVE 421
           C+ +  ++EG+ Y+E MK D  I P+  HY+ ++ +LG  G +N A  ++E++P+EPT  
Sbjct: 373 CSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAA 432

Query: 422 VWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNVI---------------------S 481
           +W+ L N  R+H + +L  YA E + +LDP     +VI                      
Sbjct: 433 IWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMK 492

Query: 482 TPPPKKRSAISMLDGKNRIGEF-RNPTLYKDDEKL-----KALKAMKEQGYVPDTRYVLH 541
               KK  A S ++ +N I  F  N   +   E++     + L  +KE GYVPDT +V+ 
Sbjct: 493 ESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIV 552

Query: 542 DIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGREL 597
            +DQ+ +E  L YHSE++A+A+ L++TP  + + I KN+R+CGDCH AIK+ S++VGRE+
Sbjct: 553 HVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREI 612

BLAST of Lsi03G004860 vs. Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.1e-70
Identity = 144/394 (36.55%), Postives = 213/394 (54.06%), Query Frame = 1

Query: 234 GKMKEAVELLKEGVKADAD----CFHLLFELCGKSKSFDNAKLVHDYFLQSTCRSDLQLN 293
           G  ++A+ L +E  K++          +   C +  +    K VHD    +   S + ++
Sbjct: 399 GLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVS 458

Query: 294 NKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGYADNGLGDEGLELFENMKQLGLQ 353
             ++ MY +CGS+++ARR+FD M  +N  +W+ M+ GY  +G G E L +F  M   G+ 
Sbjct: 459 TALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGIT 518

Query: 354 PNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFE 413
           P   TFL V+ AC+ A  V+EG   F SM + Y   P + HY  ++ ILG  GH+  A +
Sbjct: 519 PTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQ 578

Query: 414 YVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKA-----VSNVISTPPP 473
           ++E + +EP   VWETL    RIH D +L     E + +LDP        +SN+ S    
Sbjct: 579 FIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRN 638

Query: 474 KKRSAISMLDGKNR---------------------IGEFRNPTLYKDDEKLKALKA-MKE 533
             ++A      K R                      G+  +P + +  EKL+ L+  M+E
Sbjct: 639 YPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMRE 698

Query: 534 QGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNA 593
            GY P+T   LHD+++E +E  +  HSERLAIA+GLI+T   T +RIIKNLR+C DCH  
Sbjct: 699 AGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTV 758

Query: 594 IKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 597
            K++S+I  R ++VRD  RFHHFKDG CSCGDYW
Sbjct: 759 TKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792

BLAST of Lsi03G004860 vs. TrEMBL
Match: A0A0A0K6L3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073730 PE=4 SV=1)

HSP 1 Score: 897.9 bits (2319), Expect = 6.7e-258
Identity = 459/537 (85.47%), Postives = 483/537 (89.94%), Query Frame = 1

Query: 61  PPPQQPSSSDPRYRQ-AQWGSPSQVHPPSGNFNNQSFSEFQNRDYGQQGSPSNQSNYRSQ 120
           P  Q PS S+P  +   Q+ +PSQ +PP     NQS+S++QN     Q +  NQ   + Q
Sbjct: 334 PQYQNPSQSNPPNQSYPQYQNPSQTNPP-----NQSYSQYQNPS---QPNAPNQRYPQYQ 393

Query: 121 NQSPQPNPGFSRQGQSYTQAPNSWNPPNQSYPQYQNPSQPNPQNFNYQQQRGPNQWNNQN 180
           N S QPNP    Q     Q P+  NPPNQSYPQYQNPSQPNP NFNYQQQRGPNQWNNQN
Sbjct: 394 NPS-QPNP--PNQSHPQYQNPSQSNPPNQSYPQYQNPSQPNPPNFNYQQQRGPNQWNNQN 453

Query: 181 RGYPQSGRPEQRNPQVENANQLNNQAGIQRHGAQNQAPSALVSPIDELRRFCGEGKMKEA 240
           + +PQ GRPE RNPQ EN+NQLNNQAGIQR G QNQAP+ALVSPIDELRRFCGEGK+KEA
Sbjct: 454 QEHPQFGRPEHRNPQAENSNQLNNQAGIQRDGTQNQAPNALVSPIDELRRFCGEGKLKEA 513

Query: 241 VELLKEGVKADADCFHLLFELCGKSKSFDNAKLVHDYFLQSTCRSDLQLNNKVLEMYGRC 300
           VELLK+GVKAD DCFHLLFELCGKSKSFDNAK+VHDYFLQS+CRSDLQLNN+VLEMYGRC
Sbjct: 514 VELLKQGVKADVDCFHLLFELCGKSKSFDNAKVVHDYFLQSSCRSDLQLNNEVLEMYGRC 573

Query: 301 GSMSDARRVFDHMPDRNIDSWHLMMKGYADNGLGDEGLELFENMKQLGLQPNSQTFLFVM 360
           GSMSDARRVFDHMPDR+IDSWHLMMKGYADNGLGDEGLELFENMK LGLQPNSQTFL+VM
Sbjct: 574 GSMSDARRVFDHMPDRSIDSWHLMMKGYADNGLGDEGLELFENMKNLGLQPNSQTFLYVM 633

Query: 361 SACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEYVEKLPMEPT 420
           SACASANAVEEGFLYFESMKNDYHITPD +HYLGLLGILGEPGHI+EAFEYVEKLPMEPT
Sbjct: 634 SACASANAVEEGFLYFESMKNDYHITPDTNHYLGLLGILGEPGHIHEAFEYVEKLPMEPT 693

Query: 421 VEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNVISTPPPKKRSAISMLDGKNRI 480
           VEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSN ISTPPPKKRSAISMLDGKNRI
Sbjct: 694 VEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKISTPPPKKRSAISMLDGKNRI 753

Query: 481 GEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLI 540
            EFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLI
Sbjct: 754 VEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLI 813

Query: 541 STPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 597
           STPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 814 STPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 859

BLAST of Lsi03G004860 vs. TrEMBL
Match: M5VN21_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002958mg PE=4 SV=1)

HSP 1 Score: 728.0 bits (1878), Expect = 9.2e-207
Identity = 391/620 (63.06%), Postives = 469/620 (75.65%), Query Frame = 1

Query: 1   MASLMAVRRARTPILISSFFKVRSPLPSRFTFS------CVN----QTETLIKALSTSAI 60
           MASLMA+RRAR+P L S FFKVR    S F FS       +N    +T T+ K+LSTSA+
Sbjct: 1   MASLMAIRRARSPAL-SPFFKVRPLHLSHFAFSHGSNTIAINITNLETLTIAKSLSTSAV 60

Query: 61  PNDFSNFPPP--PPPQQPSSSDPRYRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYGQ-Q 120
           PN++   PP   PPP  P + D +    QW +  Q +  S  +N Q+ ++  N  Y Q Q
Sbjct: 61  PNEYQRPPPQQQPPPSDPRAFDDQANPNQWAAQGQGYGNSNQWNPQTQNQTPNNQYNQNQ 120

Query: 121 GSPSNQSNYRSQ---NQSPQ-PNPGF---SRQGQSYTQAPNS--WNPPNQSYPQYQNPSQ 180
             P    +Y  +   NQ+P  PN G+   + Q QSY Q  NS  W+P  QS PQYQNP+Q
Sbjct: 121 SYPGQNQSYPGRGYPNQAPSFPNRGYPNQNNQNQSYPQRGNSNEWSPQVQSPPQYQNPNQ 180

Query: 181 PNPQ-NFNYQQQRGPNQWNNQNRGYPQSGRPEQRNPQVENANQLNNQAGIQRHGAQNQAP 240
            NP  + ++QQ R PNQWNN N+GY Q   P Q +PQ +N  Q +N      + A NQ P
Sbjct: 181 VNPPPSPSFQQPRSPNQWNNPNQGYQQPRNPNQWSPQAQNPAQWSNNNN--NNQAVNQTP 240

Query: 241 SALVSPIDELRRFCGEGKMKEAVELL-KEGVKADADCFHLLFELCGKSKSFDNAKLVHDY 300
             +   ID+LRR C EGK KEA+EL+ KEGVKADADCF  LFELCG+ KS ++AK  HD+
Sbjct: 241 VVVPPSIDDLRRLCQEGKAKEALELMDKEGVKADADCFQSLFELCGRLKSIEDAKKAHDF 300

Query: 301 FLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGYADNGLGDEG 360
           FLQSTCR + +LN+K++EMYG+C SM+DARRVFDHM D+NIDSWHLM+ GYADNGLGD+G
Sbjct: 301 FLQSTCRGNRELNHKIIEMYGKCASMTDARRVFDHMLDKNIDSWHLMINGYADNGLGDDG 360

Query: 361 LELFENMKQLGLQPNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLG 420
           L++FE M++ GL+PNS+T L V  ACASA+AVEE F++FESMKN+Y I+P ++HYLG+L 
Sbjct: 361 LQMFEVMREQGLKPNSETLLAVFLACASADAVEEAFIHFESMKNEYGISPGVEHYLGVLD 420

Query: 421 ILGEPGHINEAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVS 480
           +LG+ GH+NEA +Y+EKLP EPTV VWE L+NYA+IHGD+DLED+AEEL+V LDP+KAV 
Sbjct: 421 VLGKCGHLNEAVDYIEKLPFEPTVAVWEALRNYAQIHGDIDLEDHAEELMVALDPSKAVV 480

Query: 481 NVISTPPPKKRSAISMLDGKNRIGEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDI 540
             I TPPPKKRSAISMLDGKNRI EF+NP LYKDDEKLKAL  MKE GYVPDTRYVLHDI
Sbjct: 481 KKIPTPPPKKRSAISMLDGKNRISEFKNPALYKDDEKLKALSGMKEGGYVPDTRYVLHDI 540

Query: 541 DQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIV 597
           DQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLR+CGDCHNAIKIMS+IVGRELIV
Sbjct: 541 DQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSKIVGRELIV 600

BLAST of Lsi03G004860 vs. TrEMBL
Match: W9S6A2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027540 PE=4 SV=1)

HSP 1 Score: 717.2 bits (1850), Expect = 1.6e-203
Identity = 390/606 (64.36%), Postives = 463/606 (76.40%), Query Frame = 1

Query: 1   MASLMAVRRARTPILISSFFKVRSPLPSRFTFSCVNQ--TETLIKALSTSAIPNDFSNFP 60
           MASLMA+RRAR    ISSFFKVR   PS F     N    +TL+K LSTSA  +++ + P
Sbjct: 1   MASLMAIRRARCQ-KISSFFKVRPLHPSHFASINANNHNLQTLVKTLSTSAFTDEYQSPP 60

Query: 61  PPPPPQQ-PSSSDPR---YRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYGQQGSPSNQS 120
            P  P+  P    P+   Y Q    +P+Q +  +   NNQ   + QN+DY      SN+ 
Sbjct: 61  TPSDPRAVPHHGKPQRQGYPQTGNPNPNQWNSQNQISNNQFSYQNQNQDY------SNRG 120

Query: 121 NYRSQNQSPQPNPGFSR--QGQSYTQAPNSW-NPPNQSYPQYQNPSQPNPQNFNYQQQRG 180
            Y +Q Q+  PN G+    Q QSY Q  N+  NP NQS+PQYQNP+Q N QN N+QQ R 
Sbjct: 121 YYPNQGQN-FPNRGYPNPVQNQSYPQHGNAQRNPQNQSFPQYQNPNQTNIQNPNFQQPRS 180

Query: 181 PNQWNNQNRGYPQSGRPEQRNPQVENANQLNNQAGIQRHGAQNQAPSALVSPIDELRRFC 240
           PNQWNNQN+ YPQ   P QRN QV++ NQ   QA      + NQ     ++ I +LR  C
Sbjct: 181 PNQWNNQNQAYPQRANPNQRNQQVQSPNQRTPQAQ-----SANQITDVKLTSISDLRTLC 240

Query: 241 GEGKMKEAVELL-KEGVKADADCFHLLFELCGKSKSFDNAKLVHDYFLQSTCRSDLQLNN 300
            EGK+KEA+EL+ KEGVKADADCF  LFELCGK KS +NAK VHD+FLQST R DLQL N
Sbjct: 241 REGKVKEAIELMDKEGVKADADCFCALFELCGKLKSLENAKRVHDFFLQSTWRGDLQLIN 300

Query: 301 KVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGYADNGLGDEGLELFENMKQLGLQP 360
           KV+EM+G+C SM+DARRVFDHM DR+IDSW+LM+ GYADNGLGD+GL+LFE M++ GL+P
Sbjct: 301 KVIEMHGKCASMTDARRVFDHMADRSIDSWNLMINGYADNGLGDDGLQLFEQMREQGLKP 360

Query: 361 NSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEY 420
           +S+TFL + SAC SA+AVEE F++F+SMK +Y I+P+++HYLG+LG+ G  GH+NEA EY
Sbjct: 361 DSRTFLALFSACGSADAVEEAFIHFDSMKTEYGISPELEHYLGILGVFGMCGHLNEAEEY 420

Query: 421 VEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNVISTPPPKKRSAI 480
           + KLP EPT  VW+ L++YARIHGDVD ED AEEL+V LDP+KAVSN I TPPPKKR+AI
Sbjct: 421 IAKLPFEPTAVVWDALRDYARIHGDVDREDRAEELMVSLDPSKAVSNKIPTPPPKKRTAI 480

Query: 481 SMLDGKNRIGEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSE 540
           SMLDGKNRI E+ NPTLYKDDEKLKAL AMK+ GYVPDTRYVLHDIDQEAKEQALLYHSE
Sbjct: 481 SMLDGKNRIIEYINPTLYKDDEKLKALAAMKDSGYVPDTRYVLHDIDQEAKEQALLYHSE 540

Query: 541 RLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKC 597
           RLAIAYGLISTPARTPLRIIKNLR+CGDCHNAIKIMS+IVGRELIVRDNKRFHHFKDGKC
Sbjct: 541 RLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKC 593

BLAST of Lsi03G004860 vs. TrEMBL
Match: A0A061E7M9_THECC (Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao GN=TCM_007055 PE=4 SV=1)

HSP 1 Score: 682.2 bits (1759), Expect = 5.8e-193
Identity = 380/630 (60.32%), Postives = 461/630 (73.17%), Query Frame = 1

Query: 1   MASLMAVR--RARTPILISSFFKVRSPLPSRFTFSC-VNQTETLI---KALSTSAIPNDF 60
           MASLMA+R  R+ +P L S  FKVRS   + FTFS  +++T+  I   K+LSTS IP+++
Sbjct: 1   MASLMAIRCGRSPSPTLSSLLFKVRSNC-AHFTFSSHLDRTQVSILNAKSLSTSPIPDEY 60

Query: 61  SNFPPPPPPQQ---PSSSDPRYRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYG--QQGS 120
              PP    Q    P+SSDPR    Q          S N N Q   + Q   +   Q+G 
Sbjct: 61  L-MPPVQHHQNQQPPTSSDPRVFHGQ---------QSPNLNLQWTPQNQGYHHPPQQRGG 120

Query: 121 P-SNQSNYRSQNQS-PQPNPGFSRQGQSYTQ--APNSWNPP------------------N 180
           P +NQ NY++Q +  P    G+  QGQ + Q  +PN W+                    N
Sbjct: 121 PGNNQFNYQNQGRGYPNQGQGYPNQGQGFPQRESPNQWSSQMNTQMPRSPISKSVEFQQN 180

Query: 181 QSYPQYQNPSQPNPQNFNYQQQRGPNQWNNQNRGYPQSGRPEQRNPQVENANQLNNQAGI 240
           QSYPQYQN +Q      N Q  R PNQWNNQN+GYPQ     +R P  +N +QL+ ++  
Sbjct: 181 QSYPQYQNANQ-----MNTQMPRSPNQWNNQNQGYPQGRNFNERAPNSQNPSQLHQESRN 240

Query: 241 QRHGAQNQAPSALVSPIDELRRFCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSF 300
           QRH  ++  P  + S +D L + C + K+KEA+EL+ +GVKADA+CF  LFE     KS 
Sbjct: 241 QRHVVEHPQPEPVPSLLD-LTQLCHDRKVKEAIELMDKGVKADANCFSSLFESIDNPKSL 300

Query: 301 DNAKLVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGY 360
           ++AK VHDYFLQSTCRSDL LNNKV+EMY +C SM+DARRVFDHMPDRN+DSWHLM+ GY
Sbjct: 301 EDAKKVHDYFLQSTCRSDLGLNNKVIEMYAKCASMTDARRVFDHMPDRNMDSWHLMINGY 360

Query: 361 ADNGLGDEGLELFENMKQLGLQPNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPD 420
           ADNGLGD+GL+LFE M++LGL+PN QTFL V+SAC SA A+EEGF++F SM+++Y I+P 
Sbjct: 361 ADNGLGDDGLQLFEQMRKLGLKPNEQTFLAVLSACGSAEAIEEGFIHFASMESEYGISPG 420

Query: 421 MDHYLGLLGILGEPGHINEAFEYVEK-LPMEPTVEVWETLKNYARIHGDVDLEDYAEELI 480
            +HY+GL+G+LG+ GH+ EA EY EK LP EPT EVWE L++YA+IHGDVDLEDYAEEL+
Sbjct: 421 FEHYMGLIGVLGKSGHLYEAKEYFEKKLPFEPTAEVWEALRDYAQIHGDVDLEDYAEELM 480

Query: 481 VDLDPTKAVSNVISTPPPKKRSAISMLDGKNRIGEFRNPTLYKDDEKLKALKAMKEQGYV 540
           V LDP+KAV+N I TPPPKKR+AISMLDGKNRI EFRNPTLYKDDEKLKALK+MKE GYV
Sbjct: 481 VALDPSKAVANNIPTPPPKKRTAISMLDGKNRISEFRNPTLYKDDEKLKALKSMKEGGYV 540

Query: 541 PDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIM 597
           PDTRYVLHDIDQEAKEQALLYHSERLAIA+GLISTPAR  LRIIKNLR+CGDCHNAIKI+
Sbjct: 541 PDTRYVLHDIDQEAKEQALLYHSERLAIAFGLISTPARQTLRIIKNLRVCGDCHNAIKII 600

BLAST of Lsi03G004860 vs. TrEMBL
Match: F6HQB8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00540 PE=4 SV=1)

HSP 1 Score: 680.6 bits (1755), Expect = 1.7e-192
Identity = 373/628 (59.39%), Postives = 443/628 (70.54%), Query Frame = 1

Query: 1   MASLMAVRRARTPILISSFFKVRSPLPSRFTFSCVNQTETLIKALSTSAIPNDFSNFPPP 60
           MASL+++RRARTP L S   KV SP  S F F       TL K LSTSA+PND+      
Sbjct: 1   MASLLSIRRARTP-LFSFLSKVPSPYSSHFIF-------TLTKTLSTSAVPNDYQR---- 60

Query: 61  PPPQQPSSSDPRYRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYGQQGSPSNQSNYRSQN 120
             PQQ   S+PR  Q Q         PS N+N+Q+    Q++ Y Q        NY  QN
Sbjct: 61  --PQQQPPSEPRDFQDQ-------RNPSYNWNSQT----QSQSYPQH------MNYGDQN 120

Query: 121 QSPQPNPGFSRQGQSYTQA--PNSWNPPNQSYPQYQNPSQPNPQN------------FNY 180
           QS  PN G+  QGQ Y Q   PN WN    +YPQ QNPS+PN QN              Y
Sbjct: 121 QS-YPNRGYPNQGQGYPQHENPNQWNRQTPTYPQPQNPSRPNHQNQYYPPTGNPSLGQGY 180

Query: 181 QQQRGPNQW----------NNQNRGYPQSGRPEQRNPQVENANQLNNQAGIQRHGAQNQA 240
            QQR PNQW          NNQN+ YPQ   P  RN          +Q    +   QN  
Sbjct: 181 PQQRSPNQWNPQHQNPSHLNNQNQNYPQ---PGSRNLPSNQNQSYPHQGSPSQWNNQNPN 240

Query: 241 PSALVS--------PIDELRRFCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSFD 300
            + +V          + +L   C EGK+KEAVEL+++GV+ADA CF+ LF  CG  K  +
Sbjct: 241 QAQIVENQVSHAPPSVADLMNLCQEGKVKEAVELMEKGVRADAQCFYALFNSCGSPKLLE 300

Query: 301 NAKLVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGYA 360
            AK VHD+FLQST RSDLQLNNKVLEMYG CGSM+DARRVFDHM +R++DSWHLM+ GYA
Sbjct: 301 EAKKVHDFFLQSTFRSDLQLNNKVLEMYGNCGSMTDARRVFDHMANRDMDSWHLMINGYA 360

Query: 361 DNGLGDEGLELFENMKQLGLQPNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDM 420
           +N +GD+GL+L+E M++LGL+PN QTFL V+S CASA AVEEGF++FESMK +Y ITP  
Sbjct: 361 NNAMGDDGLQLYEQMRKLGLEPNEQTFLAVLSTCASAEAVEEGFIHFESMKTEYGITPTF 420

Query: 421 DHYLGLLGILGEPGHINEAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVD 480
           +HY+G++ +LG+ GH+ EA E++E++P+EP+  VWE L NYA+IHGD+DLED+AEEL+V 
Sbjct: 421 EHYVGIIDVLGKSGHVIEAKEFIEQMPVEPSAVVWEALMNYAKIHGDIDLEDHAEELMVA 480

Query: 481 LDPTKAVSNVISTPPPKKRSAISMLDGKNRIGEFRNPTLYKDDEKLKALKAMKEQGYVPD 540
           LDP KAV+N   TPPPKKR+AI+MLDGKNR+ EFRNPTLYKDDEKLK+L  MKE GYVPD
Sbjct: 481 LDPLKAVANKTPTPPPKKRTAINMLDGKNRLSEFRNPTLYKDDEKLKSLNGMKEAGYVPD 540

Query: 541 TRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSR 597
           TRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLR+CGDCHNAIKIMS+
Sbjct: 541 TRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSK 593

BLAST of Lsi03G004860 vs. TAIR10
Match: AT2G15690.1 (AT2G15690.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 504.2 bits (1297), Expect = 1.1e-142
Identity = 303/611 (49.59%), Postives = 377/611 (61.70%), Query Frame = 1

Query: 1   MASLMAVRRARTP--ILISSFFKVRSPLP---SRFTFSCVNQTETLIKALSTSAIPNDFS 60
           M+SLMA+R ART   + I S  ++RS  P   S+F FS    +   IK LSTSA  ND+ 
Sbjct: 1   MSSLMAIRCARTQNIVTIGSLLQLRSSFPRLSSQFHFSGTLNSIP-IKHLSTSAAANDYH 60

Query: 61  NFP----------PPPPPQQPSSSDPRYRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYG 120
             P          P PP    S +     Q    SP+Q     G    Q     QN  +G
Sbjct: 61  QNPQSGSPSQHQRPYPPQSFDSQNQTNTNQRVPQSPNQWSTQHGGQIPQYGG--QNPQHG 120

Query: 121 QQGSPSNQSNYRSQNQSPQPNPGFSRQGQSYTQAPNSWNPPNQSYPQYQNPSQPNPQNFN 180
            Q  P     Y  QN  PQ     S+ G    Q            PQY  P   N QN N
Sbjct: 121 GQRPP-----YGGQN--PQQGGQMSQYGGHNPQHGGHRPQYGGQRPQYGGPGN-NYQNQN 180

Query: 181 YQQQRGPNQWNNQNRGYPQSGRPEQRNPQVENANQLNNQAGIQRHGAQNQAPSALVSPID 240
            QQ      +  Q +  PQ  R   ++P     NQ+N  A           PS     ++
Sbjct: 181 VQQSNQSQYYTPQQQQQPQPPRSSNQSP-----NQMNEVA---------PPPS-----VE 240

Query: 241 ELRRFCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSFDNAKLVHDYFLQSTCRSD 300
           E+ R C     K+A+ELL +G   D +CF LLFE C   KS +++K VHD+FLQS  R D
Sbjct: 241 EVMRLCQRRLYKDAIELLDKGAMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGD 300

Query: 301 LQLNNKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGYADNGLGDEGLELFENMKQ 360
            +LNN V+ M+G C S++DA+RVFDHM D+++DSWHLMM  Y+DNG+GD+ L LFE M +
Sbjct: 301 PKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTK 360

Query: 361 LGLQPNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHIN 420
            GL+PN +TFL V  ACA+   +EE FL+F+SMKN++ I+P  +HYLG+LG+LG+ GH+ 
Sbjct: 361 HGLKPNEETFLTVFLACATVGGIEEAFLHFDSMKNEHGISPKTEHYLGVLGVLGKCGHLV 420

Query: 421 EAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNVISTPPPK 480
           EA +Y+  LP EPT + WE ++NYAR+HGD+DLEDY EEL+VD+DP+KAV N I TPPPK
Sbjct: 421 EAEQYIRDLPFEPTADFWEAMRNYARLHGDIDLEDYMEELMVDVDPSKAVINKIPTPPPK 480

Query: 481 KRSAISMLDGKNRIGEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQAL 540
                +M+  K+RI EFRN T YKD+ K  A K  K   YVPDTR+VLHDIDQEAKEQAL
Sbjct: 481 SFKETNMVTSKSRILEFRNLTFYKDEAKEMAAK--KGVVYVPDTRFVLHDIDQEAKEQAL 540

Query: 541 LYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHF 597
           LYHSERLAIAYG+I TP R  L IIKNLR+CGDCHN IKIMS+I+GR LIVRDNKRFHHF
Sbjct: 541 LYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHF 579

BLAST of Lsi03G004860 vs. TAIR10
Match: AT2G25580.1 (AT2G25580.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 313.5 bits (802), Expect = 2.7e-85
Identity = 163/395 (41.27%), Postives = 240/395 (60.76%), Query Frame = 1

Query: 224 IDELRRFCGEGKMKEAVE----LLKEGVKADADCFHLLFELCGKSKSFDNAKLVHDYFLQ 283
           I+E   FC  GK+K+A+     L       D      L ++CG+++    AK VH     
Sbjct: 223 IEEYDAFCKHGKVKKALYTIDILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISA 282

Query: 284 STCRSDLQLNNKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGYADNGLGDEGLEL 343
           S    DL  N+ +LEMY  CG  ++A  VF+ M ++N+++W ++++ +A NG G++ +++
Sbjct: 283 SVSHLDLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDM 342

Query: 344 FENMKQLGLQPNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILG 403
           F   K+ G  P+ Q F  +  AC     V+EG L+FESM  DY I P ++ Y+ L+ +  
Sbjct: 343 FSRFKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYA 402

Query: 404 EPGHINEAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTK------ 463
            PG ++EA E+VE++PMEP V+VWETL N +R+HG+++L DY  E++  LDPT+      
Sbjct: 403 LPGFLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDPTRLNKQSR 462

Query: 464 -----AVSNVISTPPPKKRSAISMLDG-KNRIGEFR--NPTLYKDDEKLKALKAMK---- 523
                  ++ +     KKRS I  L G K+ + EFR  +  L ++DE  + L+ +K    
Sbjct: 463 EGFIPVKASDVEKESLKKRSGI--LHGVKSSMQEFRAGDTNLPENDELFQLLRNLKMHMV 522

Query: 524 EQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHN 583
           E GYV +TR  LHDIDQE+KE  LL HSER+A A  ++++  R P  +IKNLR+C DCHN
Sbjct: 523 EVGYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHN 582

Query: 584 AIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 597
           A+KIMS IVGRE+I RD KRFH  K+G C+C DYW
Sbjct: 583 ALKIMSDIVGREVITRDIKRFHQMKNGACTCKDYW 615

BLAST of Lsi03G004860 vs. TAIR10
Match: AT4G32450.1 (AT4G32450.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 309.7 bits (792), Expect = 3.9e-84
Identity = 194/525 (36.95%), Postives = 287/525 (54.67%), Query Frame = 1

Query: 108 GSPSNQSNYR-----SQNQSPQPNPGFSRQGQSYTQAPN---SWNPPNQSYPQYQNPSQP 167
           G+P + S++        N   Q   GF  Q  SY Q+ N     NP N+ Y    N +Q 
Sbjct: 41  GNPMDNSSHHIGYVNGFNGGEQSLGGF--QQNSYEQSLNPVSGQNPTNRFYQNGYNRNQS 100

Query: 168 --------NPQNFNYQQQRGPNQWNNQNRGYPQSGRPEQRNPQVENANQLNNQAGIQRHG 227
                   N +N N+Q   G + +     G PQ                 NN  G   H 
Sbjct: 101 YGEHSEIINQRNQNWQSSDGCSSYGTTGNGVPQE----------------NNTGG--NHF 160

Query: 228 AQNQAPSALVSPIDELRRFCGEGKMKEAVELLK----EGVKADADCFHLLFELCGKSKSF 287
            Q+ +     S +DEL   C EGK+K+AVE++K    EG   D      + +LCG +++ 
Sbjct: 161 QQDHSGH---SSLDELDSICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQAL 220

Query: 288 DNAKLVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGY 347
             AK+VH++   S   SD+   N ++EMY  CGS+ DA  VF+ MP+RN+++W  +++ +
Sbjct: 221 QEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCF 280

Query: 348 ADNGLGDEGLELFENMKQLGLQPNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPD 407
           A NG G++ ++ F   KQ G +P+ + F  +  AC     + EG L+FESM  +Y I P 
Sbjct: 281 AKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMYKEYGIIPC 340

Query: 408 MDHYLGLLGILGEPGHINEAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIV 467
           M+HY+ L+ +L EPG+++EA  +VE   MEP V++WETL N +R+HGD+ L D  ++++ 
Sbjct: 341 MEHYVSLVKMLAEPGYLDEALRFVES--MEPNVDLWETLMNLSRVHGDLILGDRCQDMVE 400

Query: 468 DLDPTKAVSNVISTPPPKKRSAI------SMLDGKN------RIGEFRNPTLYKDDEKLK 527
            LD ++      +   P K S +       M  G N        G+   P   ++ E   
Sbjct: 401 QLDASRLNKESKAGLVPVKSSDLVKEKLQRMAKGPNYGIRYMAAGDISRP---ENRELYM 460

Query: 528 ALKAMKEQ----GYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIK 587
           ALK++KE     GYVP ++  LHD+DQE+K++ L  H+ER A     + TPAR+ +R++K
Sbjct: 461 ALKSLKEHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMK 520

Query: 588 NLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 597
           NLR+C DCHNA+K+MS+IVGRELI RD KRFHH KDG CSC +YW
Sbjct: 521 NLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCREYW 537

BLAST of Lsi03G004860 vs. TAIR10
Match: AT4G30700.1 (AT4G30700.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 267.7 bits (683), Expect = 1.7e-71
Identity = 144/394 (36.55%), Postives = 213/394 (54.06%), Query Frame = 1

Query: 234 GKMKEAVELLKEGVKADAD----CFHLLFELCGKSKSFDNAKLVHDYFLQSTCRSDLQLN 293
           G  ++A+ L +E  K++          +   C +  +    K VHD    +   S + ++
Sbjct: 399 GLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVS 458

Query: 294 NKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGYADNGLGDEGLELFENMKQLGLQ 353
             ++ MY +CGS+++ARR+FD M  +N  +W+ M+ GY  +G G E L +F  M   G+ 
Sbjct: 459 TALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGIT 518

Query: 354 PNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFE 413
           P   TFL V+ AC+ A  V+EG   F SM + Y   P + HY  ++ ILG  GH+  A +
Sbjct: 519 PTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQ 578

Query: 414 YVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKA-----VSNVISTPPP 473
           ++E + +EP   VWETL    RIH D +L     E + +LDP        +SN+ S    
Sbjct: 579 FIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRN 638

Query: 474 KKRSAISMLDGKNR---------------------IGEFRNPTLYKDDEKLKALKA-MKE 533
             ++A      K R                      G+  +P + +  EKL+ L+  M+E
Sbjct: 639 YPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMRE 698

Query: 534 QGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNA 593
            GY P+T   LHD+++E +E  +  HSERLAIA+GLI+T   T +RIIKNLR+C DCH  
Sbjct: 699 AGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTV 758

Query: 594 IKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 597
            K++S+I  R ++VRD  RFHHFKDG CSCGDYW
Sbjct: 759 TKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792

BLAST of Lsi03G004860 vs. TAIR10
Match: AT2G22070.1 (AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 267.7 bits (683), Expect = 1.7e-71
Identity = 156/431 (36.19%), Postives = 237/431 (54.99%), Query Frame = 1

Query: 206 GIQRHGAQNQAPSALVSPIDE--------LRRFCGEGKMKEAVELLKE----GVKADADC 265
           G  + G  NQA +  VS  D         +  +   G   EA+ L +     G + ++  
Sbjct: 356 GYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYT 415

Query: 266 FHLLFELCGKSKSFDNAKLVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDHMP 325
              +  +     S  + K +H   ++S     + ++N ++ MY + G+++ A R FD + 
Sbjct: 416 LAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIR 475

Query: 326 -DRNIDSWHLMMKGYADNGLGDEGLELFENMKQLGLQPNSQTFLFVMSACASANAVEEGF 385
            +R+  SW  M+   A +G  +E LELFE M   GL+P+  T++ V SAC  A  V +G 
Sbjct: 476 CERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGR 535

Query: 386 LYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEYVEKLPMEPTVEVWETLKNYARI 445
            YF+ MK+   I P + HY  ++ + G  G + EA E++EK+P+EP V  W +L +  R+
Sbjct: 536 QYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRV 595

Query: 446 HGDVDLEDYAEELIVDLDPTK-----AVSNVISTPPP----------------KKRSAIS 505
           H ++DL   A E ++ L+P       A++N+ S                    KK    S
Sbjct: 596 HKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFS 655

Query: 506 MLDGKNRIGEF--RNPTLYKDDEKLKALKAM----KEQGYVPDTRYVLHDIDQEAKEQAL 565
            ++ K+++  F   + T  + +E    +K +    K+ GYVPDT  VLHD+++E KEQ L
Sbjct: 656 WIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQIL 715

Query: 566 LYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHF 597
            +HSE+LAIA+GLISTP +T LRI+KNLR+C DCH AIK +S++VGRE+IVRD  RFHHF
Sbjct: 716 RHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHF 775

BLAST of Lsi03G004860 vs. NCBI nr
Match: gi|659109903|ref|XP_008454941.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g15690 [Cucumis melo])

HSP 1 Score: 1055.8 bits (2729), Expect = 2.8e-305
Identity = 540/630 (85.71%), Postives = 560/630 (88.89%), Query Frame = 1

Query: 1   MASLMAVRRARTPILISSFFKVRSPLPSRFTFSCVNQTETLIKALSTSAIPNDFSNFPPP 60
           MASLMAVRR RTPI +SSFFKVR PL S FTF+  NQTETLIK LSTSAIP+DFSNFP  
Sbjct: 1   MASLMAVRRVRTPITVSSFFKVRYPLSSSFTFTFRNQTETLIKTLSTSAIPSDFSNFPSS 60

Query: 61  PPPQQPSSSDPRYRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYGQQGSPSNQSNYRSQN 120
           P  QQPSSS P YRQ QWGSPSQV+PPS NFN QSFSEFQN DY QQG+PSNQ NYRSQ+
Sbjct: 61  P--QQPSSSSPPYRQPQWGSPSQVNPPSENFNRQSFSEFQNHDYAQQGTPSNQLNYRSQH 120

Query: 121 QSPQPNPGFSRQGQSYTQA--PNSW----------------NP----------------P 180
           QSPQPNPGFSR+GQSYTQ    NSW                NP                P
Sbjct: 121 QSPQPNPGFSREGQSYTQVGKTNSWNPPNQSYPQYQNPSQPNPPNQSYPQYQNPSQPNPP 180

Query: 181 NQSYPQYQNPSQPNPQNFNYQQQRGPNQWNNQNRGYPQSGRPEQRNPQVENANQLNNQAG 240
           NQSYPQYQNPSQPNP NFNYQQQRGPNQWNNQN+G+PQ GR E RNPQ EN+NQLNNQA 
Sbjct: 181 NQSYPQYQNPSQPNPPNFNYQQQRGPNQWNNQNQGHPQFGRSEHRNPQPENSNQLNNQAE 240

Query: 241 IQRHGAQNQAPSALVSPIDELRRFCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKS 300
           IQRHG QNQAP+ALVSPIDELRRFCGEGK+KEAVELLK+GVKAD DCFHLLFELCGKSKS
Sbjct: 241 IQRHGTQNQAPNALVSPIDELRRFCGEGKLKEAVELLKQGVKADVDCFHLLFELCGKSKS 300

Query: 301 FDNAKLVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKG 360
            DNAK+VHDYFLQSTCRSDLQLNN+VLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKG
Sbjct: 301 LDNAKVVHDYFLQSTCRSDLQLNNEVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKG 360

Query: 361 YADNGLGDEGLELFENMKQLGLQPNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITP 420
           YADNGLGDEGLELFENMK LGLQPNSQTFL+VMSACASA+AVEEGFLYFESMKNDYHITP
Sbjct: 361 YADNGLGDEGLELFENMKNLGLQPNSQTFLYVMSACASADAVEEGFLYFESMKNDYHITP 420

Query: 421 DMDHYLGLLGILGEPGHINEAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELI 480
           D +HYLGLLGILGEPGHI+EAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELI
Sbjct: 421 DTNHYLGLLGILGEPGHIHEAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELI 480

Query: 481 VDLDPTKAVSNVISTPPPKKRSAISMLDGKNRIGEFRNPTLYKDDEKLKALKAMKEQGYV 540
           VDLDPTKAVSN I TPPPKKRSAISML+GKNRI EFRNPTLYKDDEKLKALKAMKEQGYV
Sbjct: 481 VDLDPTKAVSNKIPTPPPKKRSAISMLEGKNRIVEFRNPTLYKDDEKLKALKAMKEQGYV 540

Query: 541 PDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIM 597
           PDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIM
Sbjct: 541 PDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIM 600

BLAST of Lsi03G004860 vs. NCBI nr
Match: gi|778725128|ref|XP_011658903.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Cucumis sativus])

HSP 1 Score: 900.2 bits (2325), Expect = 1.9e-258
Identity = 459/548 (83.76%), Postives = 489/548 (89.23%), Query Frame = 1

Query: 51  PNDFSNFPPPPPPQQPSSSDPRYRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYGQQGSP 110
           P    ++P    P QP++ + RY Q Q  +PSQ +PP     NQS+ ++QN     Q +P
Sbjct: 263 PPPNQSYPQYQNPSQPNAPNQRYPQYQ--NPSQSNPP-----NQSYPQYQNPS---QSNP 322

Query: 111 SNQS--NYRSQNQSPQPNPGFSRQGQSYTQAPNSWNPPNQSYPQYQNPSQPNPQNFNYQQ 170
            NQS   Y++ +QS  PN  + +      Q P+  NPPNQSYPQYQNPSQPNP NFNYQQ
Sbjct: 323 PNQSYPQYQNPSQSNPPNQSYPQY-----QNPSQSNPPNQSYPQYQNPSQPNPPNFNYQQ 382

Query: 171 QRGPNQWNNQNRGYPQSGRPEQRNPQVENANQLNNQAGIQRHGAQNQAPSALVSPIDELR 230
           QRGPNQWNNQN+ +PQ GRPE RNPQ EN+NQLNNQAGIQR G QNQAP+ALVSPIDELR
Sbjct: 383 QRGPNQWNNQNQEHPQFGRPEHRNPQAENSNQLNNQAGIQRDGTQNQAPNALVSPIDELR 442

Query: 231 RFCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSFDNAKLVHDYFLQSTCRSDLQL 290
           RFCGEGK+KEAVELLK+GVKAD DCFHLLFELCGKSKSFDNAK+VHDYFLQS+CRSDLQL
Sbjct: 443 RFCGEGKLKEAVELLKQGVKADVDCFHLLFELCGKSKSFDNAKVVHDYFLQSSCRSDLQL 502

Query: 291 NNKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGYADNGLGDEGLELFENMKQLGL 350
           NN+VLEMYGRCGSMSDARRVFDHMPDR+IDSWHLMMKGYADNGLGDEGLELFENMK LGL
Sbjct: 503 NNEVLEMYGRCGSMSDARRVFDHMPDRSIDSWHLMMKGYADNGLGDEGLELFENMKNLGL 562

Query: 351 QPNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAF 410
           QPNSQTFL+VMSACASANAVEEGFLYFESMKNDYHITPD +HYLGLLGILGEPGHI+EAF
Sbjct: 563 QPNSQTFLYVMSACASANAVEEGFLYFESMKNDYHITPDTNHYLGLLGILGEPGHIHEAF 622

Query: 411 EYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNVISTPPPKKRS 470
           EYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSN ISTPPPKKRS
Sbjct: 623 EYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKISTPPPKKRS 682

Query: 471 AISMLDGKNRIGEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYH 530
           AISMLDGKNRI EFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYH
Sbjct: 683 AISMLDGKNRIVEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYH 742

Query: 531 SERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDG 590
           SERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDG
Sbjct: 743 SERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDG 795

Query: 591 KCSCGDYW 597
           KCSCGDYW
Sbjct: 803 KCSCGDYW 795

BLAST of Lsi03G004860 vs. NCBI nr
Match: gi|700188704|gb|KGN43937.1| (hypothetical protein Csa_7G073730 [Cucumis sativus])

HSP 1 Score: 897.9 bits (2319), Expect = 9.6e-258
Identity = 459/537 (85.47%), Postives = 483/537 (89.94%), Query Frame = 1

Query: 61  PPPQQPSSSDPRYRQ-AQWGSPSQVHPPSGNFNNQSFSEFQNRDYGQQGSPSNQSNYRSQ 120
           P  Q PS S+P  +   Q+ +PSQ +PP     NQS+S++QN     Q +  NQ   + Q
Sbjct: 334 PQYQNPSQSNPPNQSYPQYQNPSQTNPP-----NQSYSQYQNPS---QPNAPNQRYPQYQ 393

Query: 121 NQSPQPNPGFSRQGQSYTQAPNSWNPPNQSYPQYQNPSQPNPQNFNYQQQRGPNQWNNQN 180
           N S QPNP    Q     Q P+  NPPNQSYPQYQNPSQPNP NFNYQQQRGPNQWNNQN
Sbjct: 394 NPS-QPNP--PNQSHPQYQNPSQSNPPNQSYPQYQNPSQPNPPNFNYQQQRGPNQWNNQN 453

Query: 181 RGYPQSGRPEQRNPQVENANQLNNQAGIQRHGAQNQAPSALVSPIDELRRFCGEGKMKEA 240
           + +PQ GRPE RNPQ EN+NQLNNQAGIQR G QNQAP+ALVSPIDELRRFCGEGK+KEA
Sbjct: 454 QEHPQFGRPEHRNPQAENSNQLNNQAGIQRDGTQNQAPNALVSPIDELRRFCGEGKLKEA 513

Query: 241 VELLKEGVKADADCFHLLFELCGKSKSFDNAKLVHDYFLQSTCRSDLQLNNKVLEMYGRC 300
           VELLK+GVKAD DCFHLLFELCGKSKSFDNAK+VHDYFLQS+CRSDLQLNN+VLEMYGRC
Sbjct: 514 VELLKQGVKADVDCFHLLFELCGKSKSFDNAKVVHDYFLQSSCRSDLQLNNEVLEMYGRC 573

Query: 301 GSMSDARRVFDHMPDRNIDSWHLMMKGYADNGLGDEGLELFENMKQLGLQPNSQTFLFVM 360
           GSMSDARRVFDHMPDR+IDSWHLMMKGYADNGLGDEGLELFENMK LGLQPNSQTFL+VM
Sbjct: 574 GSMSDARRVFDHMPDRSIDSWHLMMKGYADNGLGDEGLELFENMKNLGLQPNSQTFLYVM 633

Query: 361 SACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEYVEKLPMEPT 420
           SACASANAVEEGFLYFESMKNDYHITPD +HYLGLLGILGEPGHI+EAFEYVEKLPMEPT
Sbjct: 634 SACASANAVEEGFLYFESMKNDYHITPDTNHYLGLLGILGEPGHIHEAFEYVEKLPMEPT 693

Query: 421 VEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNVISTPPPKKRSAISMLDGKNRI 480
           VEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSN ISTPPPKKRSAISMLDGKNRI
Sbjct: 694 VEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKISTPPPKKRSAISMLDGKNRI 753

Query: 481 GEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLI 540
            EFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLI
Sbjct: 754 VEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLI 813

Query: 541 STPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 597
           STPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 814 STPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 859

BLAST of Lsi03G004860 vs. NCBI nr
Match: gi|1009150230|ref|XP_015892908.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g15690 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 738.8 bits (1906), Expect = 7.5e-210
Identity = 394/619 (63.65%), Postives = 462/619 (74.64%), Query Frame = 1

Query: 1   MASLMAVRRARTPILISSFFKVRSPLPSRFTFSCVNQT----------ETLIKALSTSAI 60
           MASLMA+RRAR+  L  SFF VR   PS FT    N            ++L K LSTSA+
Sbjct: 1   MASLMAIRRARSKNL-PSFFNVRPLYPSHFTSIHDNNNNNNNNNKHSLQSLAKTLSTSAM 60

Query: 61  PNDFSNFPPPPPPQQPSSSDPRYRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYGQQGSP 120
            N++   PP  PP    + +P     QW S  + +P S +FNNQ   + QNR+      P
Sbjct: 61  HNEYQRSPPQQPPHPSDTENPN----QWTSQGEGYPQSQSFNNQFNYQNQNRNQNLN-YP 120

Query: 121 SNQSNYRSQNQSPQPNPGFSRQGQSYTQAPNSWNPPNQSYPQYQNPSQPNPQNFNYQQ-Q 180
           +   NY ++     PNP  S                 QSYPQYQN +  NP+  NYQQ  
Sbjct: 121 NRDQNYPNRGH---PNPNTS-----------------QSYPQYQNANHVNPRAPNYQQPS 180

Query: 181 RGPNQWNNQNRGYPQSG----------RPEQRNPQVENANQLNN-QAGIQRHGAQNQAPS 240
           R PNQWNNQN+GYP  G           P++ +PQV+N NQ NN QA  Q     NQ P+
Sbjct: 181 RNPNQWNNQNQGYPHRGSDHQWPPQVQNPDRFSPQVQNPNQWNNHQASNQVQATLNQTPN 240

Query: 241 ALVSPIDELRRFCGEGKMKEAVELL-KEGVKADADCFHLLFELCGKSKSFDNAKLVHDYF 300
            +   +++LRR C EGK+KEA+EL+ KE VKADADCFH LFELCGKSKS +NAK VHD+F
Sbjct: 241 VVPPSVEDLRRLCREGKLKEAIELMDKERVKADADCFHTLFELCGKSKSLENAKKVHDFF 300

Query: 301 LQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGYADNGLGDEGL 360
           LQSTCRSD+QL NKV+EMYG+C SM+DARRVFDHMP+RN+DSWHLMM GYADNG+GD+GL
Sbjct: 301 LQSTCRSDVQLINKVIEMYGKCASMTDARRVFDHMPERNMDSWHLMMNGYADNGMGDDGL 360

Query: 361 ELFENMKQLGLQPNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGI 420
           +LFE M++ G++PNSQTFL V SACASA+AVEE F++FES+KN+Y    +MDHYLGLLG+
Sbjct: 361 QLFEQMREQGIKPNSQTFLAVFSACASADAVEEAFIHFESIKNEYGYAQEMDHYLGLLGV 420

Query: 421 LGEPGHINEAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSN 480
           LG+ GH+NEA EY+ KLP EPTV  WE L++YARIHGD+DLED+AEELIV LDP+KAV+N
Sbjct: 421 LGKCGHLNEAEEYIHKLPFEPTVAFWEALRDYARIHGDIDLEDHAEELIVALDPSKAVAN 480

Query: 481 VISTPPPKKRSAISMLDGKNRIGEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDID 540
            I+TPPPKKR+AISML GKNRIGEF+NPTLYKDDEKLKAL  MKE GYVPDTRYVLHDID
Sbjct: 481 KITTPPPKKRTAISMLHGKNRIGEFKNPTLYKDDEKLKALSGMKEAGYVPDTRYVLHDID 540

Query: 541 QEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVR 597
           QEAKEQALLYHSERLAIAYGLISTP RTPLRIIKNLR+CGDCHNAIKIMS+IVGRELIVR
Sbjct: 541 QEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSKIVGRELIVR 593

BLAST of Lsi03G004860 vs. NCBI nr
Match: gi|1009150228|ref|XP_015892907.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g15690 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 734.2 bits (1894), Expect = 1.8e-208
Identity = 394/629 (62.64%), Postives = 461/629 (73.29%), Query Frame = 1

Query: 1   MASLMAVRRARTPILISSFFKVRSPLPSRFTFSCVNQT----------ETLIKALSTSAI 60
           MASLMA+RRAR+  L  SFF VR   PS FT    N            ++L K LSTSA+
Sbjct: 1   MASLMAIRRARSKNL-PSFFNVRPLYPSHFTSIHDNNNNNNNNNKHSLQSLAKTLSTSAM 60

Query: 61  PNDFSNFPPPPPPQQPSSSDPRYRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYGQQGSP 120
            N++   PP  PP    + +P     QW S  + +P S +FNNQ   + QNR+      P
Sbjct: 61  HNEYQRSPPQQPPHPSDTENPN----QWTSQGEGYPQSQSFNNQFNYQNQNRNQNLN-YP 120

Query: 121 SNQSNYRSQNQSPQPNPGFSRQGQSYTQAPNSWNPPNQSYPQYQNPSQPNPQNFNYQQ-Q 180
           +   NY ++     PNP  S                 QSYPQYQN +  NP+  NYQQ  
Sbjct: 121 NRDQNYPNRGH---PNPNTS-----------------QSYPQYQNANHVNPRAPNYQQPS 180

Query: 181 RGPNQWNNQNRGYPQSG--------------------RPEQRNPQVENANQLNN-QAGIQ 240
           R PNQWNNQN+GYP  G                     P + +PQV+N NQ NN QA  Q
Sbjct: 181 RNPNQWNNQNQGYPHRGSDHQWPPQVQNPDRFSPQVQNPNRFSPQVQNPNQWNNHQASNQ 240

Query: 241 RHGAQNQAPSALVSPIDELRRFCGEGKMKEAVELL-KEGVKADADCFHLLFELCGKSKSF 300
                NQ P+ +   +++LRR C EGK+KEA+EL+ KE VKADADCFH LFELCGKSKS 
Sbjct: 241 VQATLNQTPNVVPPSVEDLRRLCREGKLKEAIELMDKERVKADADCFHTLFELCGKSKSL 300

Query: 301 DNAKLVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDHMPDRNIDSWHLMMKGY 360
           +NAK VHD+FLQSTCRSD+QL NKV+EMYG+C SM+DARRVFDHMP+RN+DSWHLMM GY
Sbjct: 301 ENAKKVHDFFLQSTCRSDVQLINKVIEMYGKCASMTDARRVFDHMPERNMDSWHLMMNGY 360

Query: 361 ADNGLGDEGLELFENMKQLGLQPNSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPD 420
           ADNG+GD+GL+LFE M++ G++PNSQTFL V SACASA+AVEE F++FES+KN+Y    +
Sbjct: 361 ADNGMGDDGLQLFEQMREQGIKPNSQTFLAVFSACASADAVEEAFIHFESIKNEYGYAQE 420

Query: 421 MDHYLGLLGILGEPGHINEAFEYVEKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIV 480
           MDHYLGLLG+LG+ GH+NEA EY+ KLP EPTV  WE L++YARIHGD+DLED+AEELIV
Sbjct: 421 MDHYLGLLGVLGKCGHLNEAEEYIHKLPFEPTVAFWEALRDYARIHGDIDLEDHAEELIV 480

Query: 481 DLDPTKAVSNVISTPPPKKRSAISMLDGKNRIGEFRNPTLYKDDEKLKALKAMKEQGYVP 540
            LDP+KAV+N I+TPPPKKR+AISML GKNRIGEF+NPTLYKDDEKLKAL  MKE GYVP
Sbjct: 481 ALDPSKAVANKITTPPPKKRTAISMLHGKNRIGEFKNPTLYKDDEKLKALSGMKEAGYVP 540

Query: 541 DTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMS 597
           DTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTP RTPLRIIKNLR+CGDCHNAIKIMS
Sbjct: 541 DTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMS 600

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP153_ARATH1.9e-14149.59Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN... [more]
PP170_ARATH4.8e-8441.27Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN... [more]
PP346_ARATH7.0e-8336.95Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidop... [more]
PP252_ARATH4.9e-7637.17Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop... [more]
PP341_ARATH3.1e-7036.55Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN... [more]
Match NameE-valueIdentityDescription
A0A0A0K6L3_CUCSA6.7e-25885.47Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073730 PE=4 SV=1[more]
M5VN21_PRUPE9.2e-20763.06Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002958mg PE=4 SV=1[more]
W9S6A2_9ROSA1.6e-20364.36Uncharacterized protein OS=Morus notabilis GN=L484_027540 PE=4 SV=1[more]
A0A061E7M9_THECC5.8e-19360.32Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao G... [more]
F6HQB8_VITVI1.7e-19259.39Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00540 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT2G15690.11.1e-14249.59 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G25580.12.7e-8541.27 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G32450.13.9e-8436.95 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G30700.11.7e-7136.55 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G22070.11.7e-7136.19 pentatricopeptide (PPR) repeat-containing protein[more]
Match NameE-valueIdentityDescription
gi|659109903|ref|XP_008454941.1|2.8e-30585.71PREDICTED: pentatricopeptide repeat-containing protein At2g15690 [Cucumis melo][more]
gi|778725128|ref|XP_011658903.1|1.9e-25883.76PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Cucumis s... [more]
gi|700188704|gb|KGN43937.1|9.6e-25885.47hypothetical protein Csa_7G073730 [Cucumis sativus][more]
gi|1009150230|ref|XP_015892908.1|7.5e-21063.65PREDICTED: pentatricopeptide repeat-containing protein At2g15690 isoform X2 [Ziz... [more]
gi|1009150228|ref|XP_015892907.1|1.8e-20862.64PREDICTED: pentatricopeptide repeat-containing protein At2g15690 isoform X1 [Ziz... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G004860.1Lsi03G004860.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 316..363
score: 2.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 319..351
score: 9.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 285..315
score: 7.991coord: 250..284
score: 6.259coord: 387..417
score: 5.075coord: 351..381
score: 6.785coord: 316..350
score: 1
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 233..360
score: 4.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 25..493
score: 2.1E
NoneNo IPR availablePANTHERPTHR24015:SF363SUBFAMILY NOT NAMEDcoord: 25..493
score: 2.1E

The following gene(s) are paralogous to this gene:

None