MELO3C018444.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018444.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	pentatricopeptide repeat-containing protein At2g15690
Location	chr01 : 326486 .. 327183 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTCCAAATACTTTTGTCTTACTTTTTGTCTTCCGCTCACAAGCTCTCGGTAACTGAGGTTTCTCTCAACCTTTCCTTAGGGTTTAGGCCTTTTCTCATCAAGAAATGGCGTCTCTAATGGCTGTCCGGCGTGTTCGAACCCCCATTACTGTCTCCTCCTTCTTCAAGGTACGGTATCCTCTCTCTTCTTCTTTCACTTTCACTTTTCGAAACCAGACGGAGACACTAATCAAAACCCTAAGCACCTCGGCAATTCCTAGCGATTTCTCTAACTTTCCTTCTTCGCCGCAACAACCTTCTTCGTCTAGCCCTCCATATCGTCAGCCGCAGTGGGGCTCGCCGAGCCAGGTTAATCCTCCAAGTGAAAATTTTAATCGCCAGTCGTTCTCGGAGTTTCAGAATCACGATTATGCTCAACAGGGAACTCCTAGTAATCAATTGAATTATCGGAGTCAGCATCAGAGTCCTCAACCCAATCCTGGATTTTCCCGGGAGGGTCAGAGCTATACTCAAGTCGGCAAAACTAATTCGTGGAACCCTCCAAATCAAAGCTACCCTCAATATCAAAATCCTTCGCAGCCGAACCCTCCAAATCAAAGCTACCCTCAATATCAAAATCCTTCGCAGCCAAACCCTCCAAATCAAAGCTACCCTCAATATCAAAATCCTTCGCAGCCGAACCCTCCAAATTTCAA

mRNA sequence

AATTTTCCAAATACTTTTGTCTTACTTTTTGTCTTCCGCTCACAAGCTCTCGGTAACTGAGGTTTCTCTCAACCTTTCCTTAGGGTTTAGGCCTTTTCTCATCAAGAAATGGCGTCTCTAATGGCTGTCCGGCGTGTTCGAACCCCCATTACTGTCTCCTCCTTCTTCAAGGTACGGTATCCTCTCTCTTCTTCTTTCACTTTCACTTTTCGAAACCAGACGGAGACACTAATCAAAACCCTAAGCACCTCGGCAATTCCTAGCGATTTCTCTAACTTTCCTTCTTCGCCGCAACAACCTTCTTCGTCTAGCCCTCCATATCGTCAGCCGCAGTGGGGCTCGCCGAGCCAGGTTAATCCTCCAAGTGAAAATTTTAATCGCCAGTCGTTCTCGGAGTTTCAGAATCACGATTATGCTCAACAGGGAACTCCTAGTAATCAATTGAATTATCGGAGTCAGCATCAGAGTCCTCAACCCAATCCTGGATTTTCCCGGGAGGGTCAGAGCTATACTCAAGTCGGCAAAACTAATTCGTGGAACCCTCCAAATCAAAGCTACCCTCAATATCAAAATCCTTCGCAGCCGAACCCTCCAAATCAAAGCTACCCTCAATATCAAAATCCTTCGCAGCCAAACCCTCCAAATCAAAGCTACCCTCAATATCAAAATCCTTCGCAGCCGAACCCTCCAAATTTCAA

Coding sequence (CDS)

ATGGCGTCTCTAATGGCTGTCCGGCGTGTTCGAACCCCCATTACTGTCTCCTCCTTCTTCAAGGTACGGTATCCTCTCTCTTCTTCTTTCACTTTCACTTTTCGAAACCAGACGGAGACACTAATCAAAACCCTAAGCACCTCGGCAATTCCTAGCGATTTCTCTAACTTTCCTTCTTCGCCGCAACAACCTTCTTCGTCTAGCCCTCCATATCGTCAGCCGCAGTGGGGCTCGCCGAGCCAGGTTAATCCTCCAAGTGAAAATTTTAATCGCCAGTCGTTCTCGGAGTTTCAGAATCACGATTATGCTCAACAGGGAACTCCTAGTAATCAATTGAATTATCGGAGTCAGCATCAGAGTCCTCAACCCAATCCTGGATTTTCCCGGGAGGGTCAGAGCTATACTCAAGTCGGCAAAACTAATTCGTGGAACCCTCCAAATCAAAGCTACCCTCAATATCAAAATCCTTCGCAGCCGAACCCTCCAAATCAAAGCTACCCTCAATATCAAAATCCTTCGCAGCCAAACCCTCCAAATCAAAGCTACCCTCAATATCAAAATCCTTCGCAGCCGAACCCTCCAAATTTC

Protein sequence

MASLMAVRRVRTPITVSSFFKVRYPLSSSFTFTFRNQTETLIKTLSTSAIPSDFSNFPSSPQQPSSSSPPYRQPQWGSPSQVNPPSENFNRQSFSEFQNHDYAQQGTPSNQLNYRSQHQSPQPNPGFSREGQSYTQVGKTNSWNPPNQSYPQYQNPSQPNPPNQSYPQYQNPSQPNPPNQSYPQYQNPSQPNPPNF

Homology

[Close]

BLAST of MELO3C018444.2 vs. NCBI nr
Match: XP_008454941.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g15690 [Cucumis melo])

HSP 1 Score: 278.5 bits (711), Expect = 1.8e-71
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MASLMAVRRVRTPITVSSFFKVRYPLSSSFTFTFRNQTETLIKTLSTSAIPSDFSNFPSS 60
           MASLMAVRRVRTPITVSSFFKVRYPLSSSFTFTFRNQTETLIKTLSTSAIPSDFSNFPSS
Sbjct: 1   MASLMAVRRVRTPITVSSFFKVRYPLSSSFTFTFRNQTETLIKTLSTSAIPSDFSNFPSS 60

Query: 61  PQQPSSSSPPYRQPQWGSPSQVNPPSENFNRQSFSEFQNHDYAQQGTPSNQLNYRSQHQS 120
           PQQPSSSSPPYRQPQWGSPSQVNPPSENFNRQSFSEFQNHDYAQQGTPSNQLNYRSQHQS
Sbjct: 61  PQQPSSSSPPYRQPQWGSPSQVNPPSENFNRQSFSEFQNHDYAQQGTPSNQLNYRSQHQS 120

Query: 121 PQPNPGFSREGQSYTQVGKTNSWN 145
           PQPNPGFSREGQSYTQVGKTNSWN
Sbjct: 121 PQPNPGFSREGQSYTQVGKTNSWN 144

[Close]

BLAST of MELO3C018444.2 vs. NCBI nr
Match: XP_022952757.1 (pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 203.4 bits (516), Expect = 7.2e-49
Identity = 109/144 (75.69%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 1   MASLMAVRRVRTPITVSSFFKVRYPLSSSFTFTFRNQTETLIKTLSTSAIPSDFSNFPSS 60
           MASLMAVRRVRTPI +SSF KVR PL S+FTF+  N+TETLIK LSTSA P DFSNFP+ 
Sbjct: 1   MASLMAVRRVRTPIHISSFIKVRSPLPSTFTFSCGNRTETLIKALSTSAFPDDFSNFPTP 60

Query: 61  PQQPSSSSPPYRQPQWGSPSQVNPPSENFNRQSFSEFQNHDYAQQGTPSNQLNYRSQHQS 120
           PQQPSSS P Y Q QWGSPSQV+ PS NFN QSFSEFQN DY QQG+PSNQ+NYRSQ+QS
Sbjct: 61  PQQPSSSDPRYLQGQWGSPSQVHRPSGNFNNQSFSEFQNRDYVQQGSPSNQMNYRSQNQS 120

Query: 121 PQPNPGFSREGQSYTQVGKTNSWN 145
             PNPGF R+GQSYTQ G  NSWN
Sbjct: 121 SYPNPGFPRQGQSYTQGGNPNSWN 144

[Close]

BLAST of MELO3C018444.2 vs. NCBI nr
Match: KGN43937.1 (hypothetical protein Csa_7G073730 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 3.0e-47
Identity = 112/144 (77.78%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MASLMAVRRVRTPITVSSFFKVRYPLSSSFTFTFRNQTETLIKTLSTSAIPSDFSNFPSS 60
           MASLMAVRR RTPI VSS FKVRYPLSS FTFTFRNQTETLIKTLSTSAIP+DFSNFPSS
Sbjct: 1   MASLMAVRRARTPIIVSS-FKVRYPLSSCFTFTFRNQTETLIKTLSTSAIPNDFSNFPSS 60

Query: 61  PQQPSSSSPPYRQPQWGSPSQVNPPSENFNRQSFSEFQNHDYAQQGTPSNQLNYRSQHQS 120
           PQQPS                    SENFN QSFSEFQN DYAQQG+  NQLNYRSQHQS
Sbjct: 61  PQQPSXXXXXXXXXXXXXXXXXXXXSENFNHQSFSEFQNRDYAQQGSHGNQLNYRSQHQS 120

Query: 121 PQPNPGFSREGQSYTQVGKTNSWN 145
           PQPNPGFSR+GQSY+QVGKTNSWN
Sbjct: 121 PQPNPGFSRQGQSYSQVGKTNSWN 143

[Close]

BLAST of MELO3C018444.2 vs. NCBI nr
Match: XP_011658903.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 3.0e-47
Identity = 112/144 (77.78%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MASLMAVRRVRTPITVSSFFKVRYPLSSSFTFTFRNQTETLIKTLSTSAIPSDFSNFPSS 60
           MASLMAVRR RTPI VSS FKVRYPLSS FTFTFRNQTETLIKTLSTSAIP+DFSNFPSS
Sbjct: 1   MASLMAVRRARTPIIVSS-FKVRYPLSSCFTFTFRNQTETLIKTLSTSAIPNDFSNFPSS 60

Query: 61  PQQPSSSSPPYRQPQWGSPSQVNPPSENFNRQSFSEFQNHDYAQQGTPSNQLNYRSQHQS 120
           PQQPS                    SENFN QSFSEFQN DYAQQG+  NQLNYRSQHQS
Sbjct: 61  PQQPSXXXXXXXXXXXXXXXXXXXXSENFNHQSFSEFQNRDYAQQGSHGNQLNYRSQHQS 120

Query: 121 PQPNPGFSREGQSYTQVGKTNSWN 145
           PQPNPGFSR+GQSY+QVGKTNSWN
Sbjct: 121 PQPNPGFSRQGQSYSQVGKTNSWN 143

[Close]

BLAST of MELO3C018444.2 vs. NCBI nr
Match: XP_022972422.1 (pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 193.0 bits (489), Expect = 9.8e-46
Identity = 107/144 (74.31%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MASLMAVRRVRTPITVSSFFKVRYPLSSSFTFTFRNQTETLIKTLSTSAIPSDFSNFPSS 60
           MASLMAVRRVRTPI +SSF KVR PL S+FTF+  NQTETLIK LSTSA P DFSNFP+ 
Sbjct: 1   MASLMAVRRVRTPIHISSFIKVRSPLPSTFTFSCGNQTETLIKALSTSAFPDDFSNFPTP 60

Query: 61  PQQPSSSSPPYRQPQWGSPSQVNPPSENFNRQSFSEFQNHDYAQQGTPSNQLNYRSQHQS 120
           PQQPSSS P Y Q Q GSPSQV+ PS NFN QSFSEFQN DY Q G+PSNQ+N RSQ+QS
Sbjct: 61  PQQPSSSHPRYLQGQRGSPSQVHRPSGNFNNQSFSEFQNRDYVQLGSPSNQMNNRSQNQS 120

Query: 121 PQPNPGFSREGQSYTQVGKTNSWN 145
             PNPGF R+GQSYTQ G  NSWN
Sbjct: 121 SYPNPGFPRQGQSYTQGGNPNSWN 144

[Close]

BLAST of MELO3C018444.2 vs. TrEMBL
Match: tr|A0A1S3BZP9|A0A1S3BZP9_CUCME (pentatricopeptide repeat-containing protein At2g15690 OS=Cucumis melo OX=3656 GN=LOC103495231 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.2e-71
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MASLMAVRRVRTPITVSSFFKVRYPLSSSFTFTFRNQTETLIKTLSTSAIPSDFSNFPSS 60
           MASLMAVRRVRTPITVSSFFKVRYPLSSSFTFTFRNQTETLIKTLSTSAIPSDFSNFPSS
Sbjct: 1   MASLMAVRRVRTPITVSSFFKVRYPLSSSFTFTFRNQTETLIKTLSTSAIPSDFSNFPSS 60

Query: 61  PQQPSSSSPPYRQPQWGSPSQVNPPSENFNRQSFSEFQNHDYAQQGTPSNQLNYRSQHQS 120
           PQQPSSSSPPYRQPQWGSPSQVNPPSENFNRQSFSEFQNHDYAQQGTPSNQLNYRSQHQS
Sbjct: 61  PQQPSSSSPPYRQPQWGSPSQVNPPSENFNRQSFSEFQNHDYAQQGTPSNQLNYRSQHQS 120

Query: 121 PQPNPGFSREGQSYTQVGKTNSWN 145
           PQPNPGFSREGQSYTQVGKTNSWN
Sbjct: 121 PQPNPGFSREGQSYTQVGKTNSWN 144

[Close]

BLAST of MELO3C018444.2 vs. TrEMBL
Match: tr|A0A0A0K6L3|A0A0A0K6L3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073730 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.0e-47
Identity = 112/144 (77.78%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MASLMAVRRVRTPITVSSFFKVRYPLSSSFTFTFRNQTETLIKTLSTSAIPSDFSNFPSS 60
           MASLMAVRR RTPI VSS FKVRYPLSS FTFTFRNQTETLIKTLSTSAIP+DFSNFPSS
Sbjct: 1   MASLMAVRRARTPIIVSS-FKVRYPLSSCFTFTFRNQTETLIKTLSTSAIPNDFSNFPSS 60

Query: 61  PQQPSSSSPPYRQPQWGSPSQVNPPSENFNRQSFSEFQNHDYAQQGTPSNQLNYRSQHQS 120
           PQQPS                    SENFN QSFSEFQN DYAQQG+  NQLNYRSQHQS
Sbjct: 61  PQQPSXXXXXXXXXXXXXXXXXXXXSENFNHQSFSEFQNRDYAQQGSHGNQLNYRSQHQS 120

Query: 121 PQPNPGFSREGQSYTQVGKTNSWN 145
           PQPNPGFSR+GQSY+QVGKTNSWN
Sbjct: 121 PQPNPGFSRQGQSYSQVGKTNSWN 143

The following BLAST results are available for this feature:

BLAST of MELO3C018444.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454941.1	1.8e-71	100.00	PREDICTED: pentatricopeptide repeat-containing protein At2g15690 [Cucumis melo]	[more]
XP_022952757.1	7.2e-49	75.69	pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Cucur...	[more]
KGN43937.1	3.0e-47	77.78	hypothetical protein Csa_7G073730 [Cucumis sativus]	[more]
XP_011658903.1	3.0e-47	77.78	PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Cucumis s...	[more]
XP_022972422.1	9.8e-46	74.31	pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Cucur...	[more]

BLAST of MELO3C018444.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C018444.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C018444.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BZP9\|A0A1S3BZP9_CUCME	1.2e-71	100.00	pentatricopeptide repeat-containing protein At2g15690 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0K6L3\|A0A0A0K6L3_CUCSA	2.0e-47	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073730 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018444.2.1	MELO3C018444.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..196

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018444.2	Cp4.1LG04g08140	Cucurbita pepo (Zucchini)	cpemedB715
MELO3C018444.2	Cla97C02G032850	Watermelon (97103) v2	medwmbB166
MELO3C018444.2	Bhi05G000997	Wax gourd	medwgoB222
MELO3C018444.2	Carg22062	Silver-seed gourd	carmedB0218
MELO3C018444.2	Carg20368	Silver-seed gourd	carmedB0548
MELO3C018444.2	CsaV3_7G008660	Cucumber (Chinese Long) v3	cucmedB536

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018444.2	Cucumber (Gy14) v1	cgymedB377
MELO3C018444.2	Cucumber (Gy14) v1	cgymedB411
MELO3C018444.2	Cucurbita maxima (Rimu)	cmamedB106
MELO3C018444.2	Cucurbita maxima (Rimu)	cmamedB464
MELO3C018444.2	Cucurbita maxima (Rimu)	cmamedB535
MELO3C018444.2	Cucurbita maxima (Rimu)	cmamedB754
MELO3C018444.2	Cucurbita moschata (Rifu)	cmomedB091
MELO3C018444.2	Cucurbita moschata (Rifu)	cmomedB452
MELO3C018444.2	Cucurbita moschata (Rifu)	cmomedB523
MELO3C018444.2	Cucurbita moschata (Rifu)	cmomedB751
MELO3C018444.2	Cucurbita pepo (Zucchini)	cpemedB263
MELO3C018444.2	Cucurbita pepo (Zucchini)	cpemedB457
MELO3C018444.2	Cucurbita pepo (Zucchini)	cpemedB883
MELO3C018444.2	Wild cucumber (PI 183967)	cpimedB100
MELO3C018444.2	Wild cucumber (PI 183967)	cpimedB523
MELO3C018444.2	Cucumber (Chinese Long) v2	cumedB100
MELO3C018444.2	Cucumber (Chinese Long) v2	cumedB181
MELO3C018444.2	Cucumber (Chinese Long) v2	cumedB266
MELO3C018444.2	Cucumber (Chinese Long) v2	cumedB509
MELO3C018444.2	Melon (DHL92) v3.6.1	medmedB080
MELO3C018444.2	Melon (DHL92) v3.6.1	medmedB098
MELO3C018444.2	Bottle gourd (USVL1VR-Ls)	lsimedB260
MELO3C018444.2	Bottle gourd (USVL1VR-Ls)	lsimedB363
MELO3C018444.2	Bottle gourd (USVL1VR-Ls)	lsimedB485
MELO3C018444.2	Watermelon (Charleston Gray)	medwcgB214
MELO3C018444.2	Watermelon (Charleston Gray)	medwcgB192
MELO3C018444.2	Watermelon (Charleston Gray)	medwcgB203
MELO3C018444.2	Watermelon (97103) v1	medwmB215
MELO3C018444.2	Watermelon (97103) v1	medwmB226
MELO3C018444.2	Watermelon (97103) v1	medwmB232
MELO3C018444.2	Cucumber (Chinese Long) v3	cucmedB181
MELO3C018444.2	Cucumber (Chinese Long) v3	cucmedB269
MELO3C018444.2	Watermelon (97103) v2	medwmbB178
MELO3C018444.2	Watermelon (97103) v2	medwmbB190
MELO3C018444.2	Wax gourd	medwgoB208
MELO3C018444.2	Wax gourd	medwgoB228
MELO3C018444.2	Cucumber (Gy14) v2	cgybmedB087
MELO3C018444.2	Cucumber (Gy14) v2	cgybmedB160
MELO3C018444.2	Cucumber (Gy14) v2	cgybmedB465