Cp4.1LG04g07620 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g07620
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBasic helix-loop-helix transcription factor
LocationCp4.1LG04 : 4005182 .. 4008111 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTATGTGCTTGCATCTAACCACAGTAGCGGGGTCACTTACTGAGTATTTTTTACAATACTCAAGTCATGTGCTACTTTTATATTCCAGACAAGACAAAGACAAAGCTCCCATGTACGACTAACGGTAGCATTGTAACTCAGAAGACCATGGCATATACATAGGGTAGTTTACATTTAATTTCGTAGACTATAGGTTAGTATCTGGTATTTTTGTTTTATTATAGTTTTTGTTAAATTGTTTTAAAGATTTTTAAGTAAACATGTAAGTCCACGACAATGTTTTTTTCTTATATCAAATGATTATTTTCGCAGAAAATTATTACGTTAGGTATACAATAGCGACTTTAGGTTAAGTAGAAATCTAGGATCATTACATTTAGGGTGTCTGAACTCTCCACTAGTTTCTCTAATTAATGTGTAACATATACACTCAAATTTTGTATATACGACACTCACATGGCCAAATACAACTCACCTATTATGCGCACTTGCGGGCCTAACAAAGCACACACCACGACAGTTAGACACTCTCGCTGGCCAAATAAACTAAAAGGTTAGACGTTGTCGCGGTTTAACAGACTACCAACTTGTAAGTTTCACAAGTTGACTCCTGCTTATTAGAGTCAAGTTCACGGATAAGAGTTAGTTGACGAAACGGCCATACACACAACCAAGCATAAACTTAAATAATGAACCCAACCCAATTGCTTATTCTAACAAGTATTTAAACTCCAATCACACAATTACTTATTCTACTCTACAAGCATAAAATTACACGGAAACACCAAACAACTACTTATTTCTGTCGGTATTCTTTTTACGCTTGATTTCATTGAGGACACTGGCCTCAAAGGATGGTGGATTGAGGGTCAGTGAGGACACTGAGCCCCGAAGGAGGGTGGATTGTGAGATCCCACATCAGTTGAAGAGGGGAATGAAGCATTCTTCATAAGGATGTGAAAACCTCTCCCTAGTAGACACGTTTTAAGAACCTTGAAGAAAAACTCGAACGAGAAAGCTCAAAGAGAACAATGGTAGATTGAGCTGATCATCTCATATCCAAACATTAAATCATAAACAATATATATATTATTAACAAAATGGAAAACTAGACCATTTCAACAAAGCAATAATTGGGAAAACTCAATCTCTCAATTTGTTAAATATCCAAAAAGTCAACTCCATCACAAAAACTCACTATAAATACATCCCACAAGGCCAACATAAAATTAAAAATGGAGCAACTAAGAGGCCCCATTGTTGAAGATGGAGATCAATGGAGCTCTCTCAATGGAGTTTTCACAGCTGATGAAGAAGCTGCAACATTCATGGCTCAACTTTTCAACTCCACAGCTCCTGACCCTTTCATGGCTGCCCTTGATCTTCATAATAATTATTGCAACCCCATGAACTTTTGCTTGGGAGAGCTTGGAAATGATCACAATGGTGGTTTCAATCTTGAAGAGGAGGACTACAATTTGCAGGCTTGTTATGAAGCTGAGTTCATGAAATTACCTGAAGAAGAAGCTGCCATGGAACAAAAGAGGCATACCCAACTTGAGATCAATTGCAAGAAACGATCGAGGGGATCTCGCGATGTAAGTGTAAGTGACGCTCAAATTGAAATCGATAAAATTGAATGAATTAACCAATAGGGGAGTTCCATTAAGTATTTTTTATATGAGTGTGGAAACTTCTCCCTAGTAGACGTGTTTTAAAATCGTGAGACTAACAACGATACGTAATGGACCAAAACAGACAATATATGCTAGCGGTGGACTTGGGCGGTTACAAATGGTATCAAAGCCAAACACTGAGCGGTGTGCCAGCGAGGACGCTGGGCCTCTAAAGGGGTGGATTGTGTGATCCCACATTGGTTGGAGAGGGGAGCGAAGCGTTCCTTATAAGAGTGTGGAAACCTCTCCCTAGCATATACGTTTTAAAACCGCGAGGCTAACAGCGATATGTAACAGGTCAAAGCGGATAGTATTTGCTAACAGTGGACTTCGGTTTTTACAAATGGTATCAAAGCCAGACATTGGACGGTGTGCCAGTGAGTACGTTGGCCCCCCCAAAGGGTTGGATTGTAAGATCCTACATTGGTTGGAGAAGGGAACAAAGCATTCCTTACAAGAGTGTGGAAACCTCACCCTAACAGAAGCGTTTTAAAACTATGAGGCTGACAAAACTATTACATCGATAGGTAGAGAAGTGGAATGAAAGGTCAAAGAAAACTCAGAAGCTTACCTCAAGCAACAACACTGAAGAAGATGGAAATGCTGTTCATAGCAAGCAAAGCACAAGCAGCTATTGCTCGGAAGACGAATCCAACGCCTCGTTCGAGCTGAATAACTCGAGATCAAATCCGAAAGAGACGGCCAAAACCAGGGCTAGTAGAGGCTCAGCTACAGATCCACAGAGCCTCTATGCAAGGGTAAGAAGAAAAAAAACAAAAACAAAAACAAAAACTTCCATTCGAAAATGAAAAGTCCATTCATTTGTTATGTTGTTTATTGCAGAGAAGAAGAGAAAGAATCAATGAGAGGTTGAAAATCTTACAAAATCTTGTCCCAAATGGAACAAAGGTAAGACAATCAAAACTACCTTAAACAAAACAAAACAAAACAAAACATGATGATTGTGTTGGAAAATAATGTCTTGAGTTATTGCTTGTAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTTCAAATCAAGGTAATCATTACTAAAAACAAAATTTTGCATCATTTTACACAATTTTTTTTGACATTTATGTTCATTTTAAATGATTATTGTAGCTATTAAGCTCCGATGATTTATGGATGTACGCTCCGATCGCCTACAACGGAATGGATATCGGGCTTAATCGAACCCCGAACACGTCGAAAGAATTATGA

mRNA sequence

ATGATTTCAACTCCATCACAAAAACTCACTATAAATACATCCCACAAGGCCAACATAAAATTAAAAATGGAGCAACTAAGAGGCCCCATTGTTGAAGATGGAGATCAATGGAGCTCTCTCAATGGAGTTTTCACAGCTGATGAAGAAGCTGCAACATTCATGGCTCAACTTTTCAACTCCACAGCTCCTGACCCTTTCATGGCTGCCCTTGATCTTCATAATAATTATTGCAACCCCATGAACTTTTGCTTGGGAGAGCTTGGAAATGATCACAATGGTGGTTTCAATCTTGAAGAGGAGGACTACAATTTGCAGGCTTGTTATGAAGCTGAGTTCATGAAATTACCTGAAGAAGAAGCTGCCATGGAACAAAAGAGGCATACCCAACTTGAGATCAATTGCAAGAAACGATCGAGGGGATCTCGCGATGTAGAGAAGTGGAATGAAAGGTCAAAGAAAACTCAGAAGCTTACCTCAAGCAACAACACTGAAGAAGATGGAAATGCTGTTCATAGCAAGCAAAGCACAAGCAGCTATTGCTCGGAAGACGAATCCAACGCCTCGTTCGAGCTGAATAACTCGAGATCAAATCCGAAAGAGACGGCCAAAACCAGGGCTAGTAGAGGCTCAGCTACAGATCCACAGAGCCTCTATGCAAGGAGAAGAAGAGAAAGAATCAATGAGAGGTTGAAAATCTTACAAAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTTCAAATCAAGCTATTAAGCTCCGATGATTTATGGATGTACGCTCCGATCGCCTACAACGGAATGGATATCGGGCTTAATCGAACCCCGAACACGTCGAAAGAATTATGA

Coding sequence (CDS)

ATGATTTCAACTCCATCACAAAAACTCACTATAAATACATCCCACAAGGCCAACATAAAATTAAAAATGGAGCAACTAAGAGGCCCCATTGTTGAAGATGGAGATCAATGGAGCTCTCTCAATGGAGTTTTCACAGCTGATGAAGAAGCTGCAACATTCATGGCTCAACTTTTCAACTCCACAGCTCCTGACCCTTTCATGGCTGCCCTTGATCTTCATAATAATTATTGCAACCCCATGAACTTTTGCTTGGGAGAGCTTGGAAATGATCACAATGGTGGTTTCAATCTTGAAGAGGAGGACTACAATTTGCAGGCTTGTTATGAAGCTGAGTTCATGAAATTACCTGAAGAAGAAGCTGCCATGGAACAAAAGAGGCATACCCAACTTGAGATCAATTGCAAGAAACGATCGAGGGGATCTCGCGATGTAGAGAAGTGGAATGAAAGGTCAAAGAAAACTCAGAAGCTTACCTCAAGCAACAACACTGAAGAAGATGGAAATGCTGTTCATAGCAAGCAAAGCACAAGCAGCTATTGCTCGGAAGACGAATCCAACGCCTCGTTCGAGCTGAATAACTCGAGATCAAATCCGAAAGAGACGGCCAAAACCAGGGCTAGTAGAGGCTCAGCTACAGATCCACAGAGCCTCTATGCAAGGAGAAGAAGAGAAAGAATCAATGAGAGGTTGAAAATCTTACAAAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTTCAAATCAAGCTATTAAGCTCCGATGATTTATGGATGTACGCTCCGATCGCCTACAACGGAATGGATATCGGGCTTAATCGAACCCCGAACACGTCGAAAGAATTATGA

Protein sequence

MISTPSQKLTINTSHKANIKLKMEQLRGPIVEDGDQWSSLNGVFTADEEAATFMAQLFNSTAPDPFMAALDLHNNYCNPMNFCLGELGNDHNGGFNLEEEDYNLQACYEAEFMKLPEEEAAMEQKRHTQLEINCKKRSRGSRDVEKWNERSKKTQKLTSSNNTEEDGNAVHSKQSTSSYCSEDESNASFELNNSRSNPKETAKTRASRGSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNRTPNTSKEL
Homology
[Close]
BLAST of Cp4.1LG04g07620 vs. Swiss-Prot
Match: BH085_ARATH (Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 9.9e-38
Identity = 108/179 (60.34%), Postives = 130/179 (72.63%), Query Frame = 1 

Query: 135 KKRSRG-SRDVEKW---NERSKKTQKLTSSNNT--EEDGN---------AVHSKQSTSS- 194
           KKRSR  S D  K    N+R++K  +++  NN   EE+G          A+ S+Q++S+ 
Sbjct: 171 KKRSRATSTDKNKRARVNKRAQKNVEMSGDNNEGEEEEGETKLKKRKNGAMMSRQNSSTT 230

Query: 195 YCSEDESN-ASFELNNSRSNPKE---------TAKTRASRGSATDPQSLYARRRRERINE 254
           +C+E+ESN A  +     S+ KE           KTRASRG+ATDPQSLYAR+RRERINE
Sbjct: 231 FCTEEESNCADQDGGGEDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYARKRRERINE 290

Query: 255 RLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLN 288
           RL+ILQNLVPNGTKVDISTMLEEAV YVKFLQLQIKLLSSDDLWMYAPIA+NGMDIGL+
Sbjct: 291 RLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAFNGMDIGLS 349

[Close]
BLAST of Cp4.1LG04g07620 vs. Swiss-Prot
Match: BH084_ARATH (Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.2e-36
Identity = 98/182 (53.85%), Postives = 121/182 (66.48%), Query Frame = 1 

Query: 123 EQKRHTQLEINCKKRSRGSRDVEKWNERSKKTQKLTS-SNNTEEDGNAVHSKQSTS---- 182
           ++K   Q E + K+    + D  K   +++++QK    S   E  G   +++++      
Sbjct: 139 DEKMFNQCESSKKRTRATTTDKNKRANKARRSQKCVEMSGENENSGEEEYTEKAAGKRKT 198

Query: 183 -------SYCSEDESNASFELNNSRSNPKETA-----KTRASRGSATDPQSLYARRRRER 242
                  + CS+DESN      +        A     KTRASRG+ATDPQSLYAR+RRER
Sbjct: 199 KPLKPQKTCCSDDESNGGDTFLSKEDGEDSKALNLNGKTRASRGAATDPQSLYARKRRER 258

Query: 243 INERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIG 288
           INERL+ILQ+LVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIG
Sbjct: 259 INERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIG 318

[Close]
BLAST of Cp4.1LG04g07620 vs. Swiss-Prot
Match: BH054_ARATH (Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.9e-34
Identity = 93/183 (50.82%), Postives = 120/183 (65.57%), Query Frame = 1 

Query: 115 LPEEEAAMEQKRHTQLEINCKKRSRGSRDVEKWNE----------RSKKTQKLTSSNNTE 174
           LP    + +Q  H Q   + K++     ++ K N           +SKK Q+++S +NT 
Sbjct: 77  LPAMLDSWDQSHHLQETSSLKRKLLDVENLCKTNSNCDVTRQELAKSKKKQRVSSESNTV 136

Query: 175 EDGNAVHSKQSTSSYCSEDESNASFELNNSRSNPKETAKTRASRGSATDPQSLYARRRRE 234
           ++ N       + S  S+DE  +   +           KTRA++G+ATDPQSLYAR+RRE
Sbjct: 137 DESNTNWVDGQSLSNSSDDEKASVTSVKG---------KTRATKGTATDPQSLYARKRRE 196

Query: 235 RINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDI 288
           +INERLK LQNLVPNGTKVDISTMLEEAV YVKFLQLQIKLLSSDDLWMYAP+AYNG+D+
Sbjct: 197 KINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPLAYNGLDM 250

[Close]
BLAST of Cp4.1LG04g07620 vs. Swiss-Prot
Match: BH139_ARATH (Transcription factor bHLH139 OS=Arabidopsis thaliana GN=BHLH139 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-33
Identity = 86/139 (61.87%), Postives = 108/139 (77.70%), Query Frame = 1 

Query: 150 RSKKTQKLTSSNN-TEEDGNAVHSKQSTSSYCSEDESNASFELNNSRSNPKETAKTRASR 209
           + +K QKL+S +N   E   A    QS SSY S D+  A   ++N+  + K  AK  A+R
Sbjct: 79  KPRKKQKLSSESNLVTEPKTAWRDGQSLSSYNSSDDEKALGLVSNTSKSLKRKAK--ANR 138

Query: 210 GSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSS 269
           G A+DPQSLYAR+RRERIN+RLK LQ+LVPNGTKVDISTMLE+AV YVKFLQLQIKLLSS
Sbjct: 139 GIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQLQIKLLSS 198

Query: 270 DDLWMYAPIAYNGMDIGLN 288
           +DLWMYAP+A+NG+++GL+
Sbjct: 199 EDLWMYAPLAHNGLNMGLH 215

[Close]
BLAST of Cp4.1LG04g07620 vs. Swiss-Prot
Match: BH086_ARATH (Putative transcription factor bHLH086 OS=Arabidopsis thaliana GN=BHLH86 PE=3 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 5.7e-17
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 1 

Query: 193 NSRSNPKETAKTRASRGSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEA 252
           N +  PK T        S  DPQSL A+ RRERI+ERLK+LQ LVPNGTKVD+ TMLE+A
Sbjct: 197 NGKIKPKATT-------SPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKA 256

Query: 253 VQYVKFLQLQIKLLSSDDLW 273
           + YVKFLQ+Q+K+L++D+ W
Sbjct: 257 IGYVKFLQVQVKVLAADEFW 269

[Close]
BLAST of Cp4.1LG04g07620 vs. TrEMBL
Match: A0A0A0K6C1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071410 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 3.4e-69
Identity = 193/327 (59.02%), Postives = 212/327 (64.83%), Query Frame = 1 

Query: 40  LNGVFTA-------DEEAATFMAQL-FNSTA---PDPFMAALDL---------------- 99
           +NG F A       +EE ATFMAQL FN+ A   PDPFMA L                  
Sbjct: 5   INGSFIANHEDQEEEEEEATFMAQLLFNTKANSPPDPFMATLSYDQTPSSSTFNYSLSQE 64

Query: 100 -----------HNNYCNPMN---------FCLGELG----NDHNGGF---------NLEE 159
                      H  Y NPMN         F LGELG    ND+   F         N+E 
Sbjct: 65  SSDEILFPNNNHYYYSNPMNNNNSNSSNYFSLGELGTYYSNDNGSDFHVQVPEDSMNVEV 124

Query: 160 EDYNLQACYE-AEFMKLPEEEAAMEQKRHTQLE-INCKKRSRGS--RDVEKW-NERSKKT 219
            + NLQ C+E AE +KLPEEEAA     H  ++ INCKKRSRG     V+K  NERSKK 
Sbjct: 125 SENNLQPCFEEAELIKLPEEEAA-----HYHIDQINCKKRSRGEFGDHVQKGRNERSKKA 184

Query: 220 QKLTSSNNT-EEDGNAVHSKQSTSSYCSEDESNASFE----LNNSRSNPKETAKTRASRG 279
           QKLTSS NT EEDGNA  S+QSTS+YCSEDESNAS +     NNSRS+     K+RASRG
Sbjct: 185 QKLTSSTNTTEEDGNAGLSRQSTSTYCSEDESNASLDQNGGANNSRSSLNGANKSRASRG 244

Query: 280 SATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSD 296
           SATDPQSLYAR+RRERINERL+ILQ LVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSD
Sbjct: 245 SATDPQSLYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSD 304

[Close]
BLAST of Cp4.1LG04g07620 vs. TrEMBL
Match: A5CAE3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021999 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 6.7e-49
Identity = 139/232 (59.91%), Postives = 165/232 (71.12%), Query Frame = 1 

Query: 74  NNYCNPMNFCLGELGNDHNGGFN--------LEEEDY--NLQACYEAEFMKLPEEEAAME 133
           NN    M+FC+G+   D N            +E ++Y  N++ C    F ++PE  +A E
Sbjct: 114 NNSAMSMDFCIGD---DKNNSLAVQVFADSLMEGDEYCLNVEEC-RRNFPEMPELPSATE 173

Query: 134 QKRHTQLEINCKKRSRGSRDVEKWNERS--KKTQKLTSSNNTEEDGNAVHSKQSTSSYCS 193
            K +   E N KKR R S DV+K N+R+  KK+QK  SSNN E++   V + QS+SS  S
Sbjct: 174 DKNNKMPE-NSKKRMRDSGDVQK-NKRNVKKKSQKSVSSNNEEDNNGGVVNGQSSSSCSS 233

Query: 194 EDESNASFELNNSRSNPKETA------KTRASRGSATDPQSLYARRRRERINERLKILQN 253
           EDES AS ELN S S+PK +A      K RASRGSATDPQSLYAR+RRERINERLKILQN
Sbjct: 234 EDESIASQELNGS-SSPKGSAALNSKDKARASRGSATDPQSLYARKRRERINERLKILQN 293

Query: 254 LVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLN 288
           LVPNGTKVDISTMLEEAV+YVKFLQLQIKLLSSDDLWMYAP+AYNGMDIGL+
Sbjct: 294 LVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPLAYNGMDIGLD 338

[Close]
BLAST of Cp4.1LG04g07620 vs. TrEMBL
Match: A0A061E855_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma cacao GN=TCM_007220 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.3e-47
Identity = 130/212 (61.32%), Postives = 153/212 (72.17%), Query Frame = 1 

Query: 88  GNDHNGGFNLEEE---DYNLQACYEAEFMKLPEEEAAMEQKRHTQLEINCKKRSRGSRDV 147
           GN    G + +E    + NL+   E+E   +P+ E   E K +   E N KKRSR S DV
Sbjct: 149 GNVEQAGKSHQEPALPNKNLEPKRESE---IPQPEPVTEIKSNNISE-NSKKRSRSSGDV 208

Query: 148 EK--WNERSKKTQKLTSSNNTEEDGNAVHSKQSTSSYCSEDESNASFELNNSRSNPKETA 207
           +K   N RSKK Q   S+ N ++DGNA  + QS++S  S+D+SNAS ELN  ++      
Sbjct: 209 QKNRQNARSKKNQGSASTTNNDKDGNAGLNGQSSASCSSDDDSNASQELNGGQAALNLNG 268

Query: 208 KTRASRGSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQ 267
           KTRASRG+ATDPQSLYAR+RRERINERL+ILQNLVPNGTKVDISTMLEEAVQYVKFLQLQ
Sbjct: 269 KTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQ 328

Query: 268 IKLLSSDDLWMYAPIAYNGMDIGLNRTPNTSK 295
           IKLLSSDDLWMYAPIAYNGMDIGL+    T K
Sbjct: 329 IKLLSSDDLWMYAPIAYNGMDIGLDLKVATPK 356

[Close]
BLAST of Cp4.1LG04g07620 vs. TrEMBL
Match: B9GI92_POPTR (Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0001s30150g PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.4e-46
Identity = 131/227 (57.71%), Postives = 155/227 (68.28%), Query Frame = 1 

Query: 85  GELGN---DHNGGFN----LEEEDYNLQACYEAEFMKLPEEEAAMEQKRHTQLEINCKKR 144
           GEL N   + +GG      L E + NLQ   E+   K+P  E  +E K     E N KKR
Sbjct: 91  GELSNGNVEESGGNQTVAALPEPESNLQPKRES---KMPASELPLEDKSRKPPE-NSKKR 150

Query: 145 SRGSRDVEK--WNERSKKTQKLTSSNNTEEDGNAVHSKQSTSSYCSEDESNASFELNNSR 204
           SR + D +K   N RSKK+QK+ S+ N +E+ N   +   +S  CSEDESNAS ELN   
Sbjct: 151 SRRTGDAQKNKRNVRSKKSQKVASTGNNDEESNGGLNGPVSSGCCSEDESNASQELNGGA 210

Query: 205 SNP---------KETAKTRASRGSATDPQSLYARRRRERINERLKILQNLVPNGTKVDIS 264
           S+            + KTRAS+G+ATDPQSLYAR+RRERINERL+ILQNLVPNGTKVDIS
Sbjct: 211 SSSLSSKGTTTLNSSGKTRASKGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDIS 270

Query: 265 TMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNRTPNTS 294
           TMLEEAVQYVKFLQLQIKLLSS+DLWMYAPIAYNGMDIGL+    T+
Sbjct: 271 TMLEEAVQYVKFLQLQIKLLSSEDLWMYAPIAYNGMDIGLDHLKLTT 313

[Close]
BLAST of Cp4.1LG04g07620 vs. TrEMBL
Match: A5B2R9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007899 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.0e-46
Identity = 132/258 (51.16%), Postives = 163/258 (63.18%), Query Frame = 1 

Query: 38  SSLNGVFTADEEAATFMAQLFNSTAPDPFMAALDLHNNYCNPMNFCLGELGNDHNGGFNL 97
           S+   +  ADE+  +    +F  +A +  +   +      N  N  LG L +    G  +
Sbjct: 123 STAMDICMADEKDTSSFVPVFPDSASEETVLVGE------NISNGKLGNLDDGQIAGIAV 182

Query: 98  EEEDYNLQACYEAEFMKLPEEEAAMEQKRHTQLEINCKKRSRGSRDV--EKWNERSKKTQ 157
            E +  L+   +     +PE     E+K ++ L    KK+ R SRDV   K N +S++  
Sbjct: 183 PENELQLKRKSD-----VPERLRGGEEKINSDLSETAKKKPRVSRDVCGSKKNVKSRRGL 242

Query: 158 KLTSSNNTEEDGNAVHSKQSTSSYCSEDESNASFELNNSRSNPKE-------TAKTRASR 217
           K T + N EED NAV   QS+SS  SED+SNAS ELN   ++  +         KTRASR
Sbjct: 243 KPTPNGNNEEDTNAVSEGQSSSSISSEDDSNASQELNGGXTSESKGSAALNSNGKTRASR 302

Query: 218 GSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSS 277
           GSATDPQSLYAR+RRERINERL+ILQNLVPNGTKVDISTMLEEAV YVKFLQLQIKLLSS
Sbjct: 303 GSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSS 362

Query: 278 DDLWMYAPIAYNGMDIGL 287
           DD+WMYAPIAYNGMDIGL
Sbjct: 363 DDMWMYAPIAYNGMDIGL 369

[Close]
BLAST of Cp4.1LG04g07620 vs. TAIR10
Match: AT4G33880.1 (AT4G33880.1 ROOT HAIR DEFECTIVE 6-LIKE 2)

HSP 1 Score: 158.7 bits (400), Expect = 5.6e-39
Identity = 108/179 (60.34%), Postives = 130/179 (72.63%), Query Frame = 1 

Query: 135 KKRSRG-SRDVEKW---NERSKKTQKLTSSNNT--EEDGN---------AVHSKQSTSS- 194
           KKRSR  S D  K    N+R++K  +++  NN   EE+G          A+ S+Q++S+ 
Sbjct: 171 KKRSRATSTDKNKRARVNKRAQKNVEMSGDNNEGEEEEGETKLKKRKNGAMMSRQNSSTT 230

Query: 195 YCSEDESN-ASFELNNSRSNPKE---------TAKTRASRGSATDPQSLYARRRRERINE 254
           +C+E+ESN A  +     S+ KE           KTRASRG+ATDPQSLYAR+RRERINE
Sbjct: 231 FCTEEESNCADQDGGGEDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYARKRRERINE 290

Query: 255 RLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLN 288
           RL+ILQNLVPNGTKVDISTMLEEAV YVKFLQLQIKLLSSDDLWMYAPIA+NGMDIGL+
Sbjct: 291 RLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAFNGMDIGLS 349

[Close]
BLAST of Cp4.1LG04g07620 vs. TAIR10
Match: AT1G27740.1 (AT1G27740.1 root hair defective 6-like 4)

HSP 1 Score: 146.7 bits (369), Expect = 2.2e-35
Identity = 93/183 (50.82%), Postives = 120/183 (65.57%), Query Frame = 1 

Query: 115 LPEEEAAMEQKRHTQLEINCKKRSRGSRDVEKWNE----------RSKKTQKLTSSNNTE 174
           LP    + +Q  H Q   + K++     ++ K N           +SKK Q+++S +NT 
Sbjct: 77  LPAMLDSWDQSHHLQETSSLKRKLLDVENLCKTNSNCDVTRQELAKSKKKQRVSSESNTV 136

Query: 175 EDGNAVHSKQSTSSYCSEDESNASFELNNSRSNPKETAKTRASRGSATDPQSLYARRRRE 234
           ++ N       + S  S+DE  +   +           KTRA++G+ATDPQSLYAR+RRE
Sbjct: 137 DESNTNWVDGQSLSNSSDDEKASVTSVKG---------KTRATKGTATDPQSLYARKRRE 196

Query: 235 RINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDI 288
           +INERLK LQNLVPNGTKVDISTMLEEAV YVKFLQLQIKLLSSDDLWMYAP+AYNG+D+
Sbjct: 197 KINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPLAYNGLDM 250

[Close]
BLAST of Cp4.1LG04g07620 vs. TAIR10
Match: AT5G43175.1 (AT5G43175.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-34
Identity = 86/139 (61.87%), Postives = 108/139 (77.70%), Query Frame = 1 

Query: 150 RSKKTQKLTSSNN-TEEDGNAVHSKQSTSSYCSEDESNASFELNNSRSNPKETAKTRASR 209
           + +K QKL+S +N   E   A    QS SSY S D+  A   ++N+  + K  AK  A+R
Sbjct: 79  KPRKKQKLSSESNLVTEPKTAWRDGQSLSSYNSSDDEKALGLVSNTSKSLKRKAK--ANR 138

Query: 210 GSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSS 269
           G A+DPQSLYAR+RRERIN+RLK LQ+LVPNGTKVDISTMLE+AV YVKFLQLQIKLLSS
Sbjct: 139 GIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQLQIKLLSS 198

Query: 270 DDLWMYAPIAYNGMDIGLN 288
           +DLWMYAP+A+NG+++GL+
Sbjct: 199 EDLWMYAPLAHNGLNMGLH 215

[Close]
BLAST of Cp4.1LG04g07620 vs. TAIR10
Match: AT2G14760.3 (AT2G14760.3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-34
Identity = 98/195 (50.26%), Postives = 121/195 (62.05%), Query Frame = 1 

Query: 123 EQKRHTQLEINCKKRSRGSRDVEKWNERSKKTQKLTS-SNNTEEDGNAVHSKQSTS---- 182
           ++K   Q E + K+    + D  K   +++++QK    S   E  G   +++++      
Sbjct: 139 DEKMFNQCESSKKRTRATTTDKNKRANKARRSQKCVEMSGENENSGEEEYTEKAAGKRKT 198

Query: 183 -------SYCSEDESNASFELNNSRSNPKETA-----KTRASRGSATDPQSLYAR----- 242
                  + CS+DESN      +        A     KTRASRG+ATDPQSLYAR     
Sbjct: 199 KPLKPQKTCCSDDESNGGDTFLSKEDGEDSKALNLNGKTRASRGAATDPQSLYARLKQLN 258

Query: 243 --------RRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLW 288
                   +RRERINERL+ILQ+LVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLW
Sbjct: 259 KVHCMMVQKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLW 318

[Close]
BLAST of Cp4.1LG04g07620 vs. TAIR10
Match: AT5G37800.1 (AT5G37800.1 RHD SIX-LIKE 1)

HSP 1 Score: 89.7 bits (221), Expect = 3.2e-18
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 1 

Query: 193 NSRSNPKETAKTRASRGSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEA 252
           N +  PK T        S  DPQSL A+ RRERI+ERLK+LQ LVPNGTKVD+ TMLE+A
Sbjct: 197 NGKIKPKATT-------SPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKA 256

Query: 253 VQYVKFLQLQIKLLSSDDLW 273
           + YVKFLQ+Q+K+L++D+ W
Sbjct: 257 IGYVKFLQVQVKVLAADEFW 269

[Close]
BLAST of Cp4.1LG04g07620 vs. NCBI nr
Match: gi|659110067|ref|XP_008455031.1| (PREDICTED: transcription factor bHLH54 [Cucumis melo])

HSP 1 Score: 276.2 bits (705), Expect = 6.8e-71
Identity = 193/345 (55.94%), Postives = 216/345 (62.61%), Query Frame = 1 

Query: 23  MEQLRGPIVEDGDQWSSLNGVFTADEEAATFMAQL-FNSTA---PDPFMAALDL------ 82
           MEQL G  + + ++          +EE ATFMAQL FN+ A   PDPFMA L        
Sbjct: 1   MEQLNGSFIANHEEEDH------EEEEEATFMAQLLFNTKANSPPDPFMATLSYDQTPSS 60

Query: 83  ---------------------------HNNYCNPMN---------FCLGELGNDHNGG-- 142
                                      H  YCNPMN         F LGELGN +N    
Sbjct: 61  STFYSLSQESSDELLFPTNENNNNHHHHYYYCNPMNNNNDNSSNYFSLGELGNYYNNNNG 120

Query: 143 --FNLE----------EEDYNLQACYEA--EFMKLPEEEAAMEQKRHTQLEINCKKRSRG 202
             F+L+           E+ +LQ C+E   + +KLPEEEAA     H Q EINCKKRSRG
Sbjct: 121 SNFHLQVPEDSMNVEVSENNSLQPCFEEADQLIKLPEEEAA-----HYQTEINCKKRSRG 180

Query: 203 S---RDVEKW-NERSKKTQKLTSSNNTEEDGNAVHSKQSTSSYCSEDESNASFELN---- 262
                 V+K  NER KKTQKLTSS NTEEDGN   S+QSTS+YCSEDESNAS + N    
Sbjct: 181 EFGDHHVQKGRNERGKKTQKLTSSTNTEEDGNGGLSRQSTSTYCSEDESNASLDRNGGAN 240

Query: 263 -NSRSNPKETAKTRASRGSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEE 296
            NS S+     K+RASRGSATDPQSLYAR+RRERINERL+ILQNLVPNGTKVDISTMLEE
Sbjct: 241 YNSGSSLNGPNKSRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEE 300

[Close]
BLAST of Cp4.1LG04g07620 vs. NCBI nr
Match: gi|700188619|gb|KGN43852.1| (hypothetical protein Csa_7G071410 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 4.9e-69
Identity = 193/327 (59.02%), Postives = 212/327 (64.83%), Query Frame = 1 

Query: 40  LNGVFTA-------DEEAATFMAQL-FNSTA---PDPFMAALDL---------------- 99
           +NG F A       +EE ATFMAQL FN+ A   PDPFMA L                  
Sbjct: 5   INGSFIANHEDQEEEEEEATFMAQLLFNTKANSPPDPFMATLSYDQTPSSSTFNYSLSQE 64

Query: 100 -----------HNNYCNPMN---------FCLGELG----NDHNGGF---------NLEE 159
                      H  Y NPMN         F LGELG    ND+   F         N+E 
Sbjct: 65  SSDEILFPNNNHYYYSNPMNNNNSNSSNYFSLGELGTYYSNDNGSDFHVQVPEDSMNVEV 124

Query: 160 EDYNLQACYE-AEFMKLPEEEAAMEQKRHTQLE-INCKKRSRGS--RDVEKW-NERSKKT 219
            + NLQ C+E AE +KLPEEEAA     H  ++ INCKKRSRG     V+K  NERSKK 
Sbjct: 125 SENNLQPCFEEAELIKLPEEEAA-----HYHIDQINCKKRSRGEFGDHVQKGRNERSKKA 184

Query: 220 QKLTSSNNT-EEDGNAVHSKQSTSSYCSEDESNASFE----LNNSRSNPKETAKTRASRG 279
           QKLTSS NT EEDGNA  S+QSTS+YCSEDESNAS +     NNSRS+     K+RASRG
Sbjct: 185 QKLTSSTNTTEEDGNAGLSRQSTSTYCSEDESNASLDQNGGANNSRSSLNGANKSRASRG 244

Query: 280 SATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSD 296
           SATDPQSLYAR+RRERINERL+ILQ LVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSD
Sbjct: 245 SATDPQSLYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSD 304

[Close]
BLAST of Cp4.1LG04g07620 vs. NCBI nr
Match: gi|147866312|emb|CAN79863.1| (hypothetical protein VITISV_021999 [Vitis vinifera])

HSP 1 Score: 202.6 bits (514), Expect = 9.6e-49
Identity = 139/232 (59.91%), Postives = 165/232 (71.12%), Query Frame = 1 

Query: 74  NNYCNPMNFCLGELGNDHNGGFN--------LEEEDY--NLQACYEAEFMKLPEEEAAME 133
           NN    M+FC+G+   D N            +E ++Y  N++ C    F ++PE  +A E
Sbjct: 114 NNSAMSMDFCIGD---DKNNSLAVQVFADSLMEGDEYCLNVEEC-RRNFPEMPELPSATE 173

Query: 134 QKRHTQLEINCKKRSRGSRDVEKWNERS--KKTQKLTSSNNTEEDGNAVHSKQSTSSYCS 193
            K +   E N KKR R S DV+K N+R+  KK+QK  SSNN E++   V + QS+SS  S
Sbjct: 174 DKNNKMPE-NSKKRMRDSGDVQK-NKRNVKKKSQKSVSSNNEEDNNGGVVNGQSSSSCSS 233

Query: 194 EDESNASFELNNSRSNPKETA------KTRASRGSATDPQSLYARRRRERINERLKILQN 253
           EDES AS ELN S S+PK +A      K RASRGSATDPQSLYAR+RRERINERLKILQN
Sbjct: 234 EDESIASQELNGS-SSPKGSAALNSKDKARASRGSATDPQSLYARKRRERINERLKILQN 293

Query: 254 LVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLN 288
           LVPNGTKVDISTMLEEAV+YVKFLQLQIKLLSSDDLWMYAP+AYNGMDIGL+
Sbjct: 294 LVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPLAYNGMDIGLD 338

[Close]
BLAST of Cp4.1LG04g07620 vs. NCBI nr
Match: gi|225428979|ref|XP_002264083.1| (PREDICTED: transcription factor bHLH139 [Vitis vinifera])

HSP 1 Score: 202.6 bits (514), Expect = 9.6e-49
Identity = 139/232 (59.91%), Postives = 165/232 (71.12%), Query Frame = 1 

Query: 74  NNYCNPMNFCLGELGNDHNGGFN--------LEEEDY--NLQACYEAEFMKLPEEEAAME 133
           NN    M+FC+G+   D N            +E ++Y  N++ C    F ++PE  +A E
Sbjct: 113 NNSAMSMDFCIGD---DKNNSLAVQVFADSLMEGDEYCLNVEEC-RRNFPEMPELPSATE 172

Query: 134 QKRHTQLEINCKKRSRGSRDVEKWNERS--KKTQKLTSSNNTEEDGNAVHSKQSTSSYCS 193
            K +   E N KKR R S DV+K N+R+  KK+QK  SSNN E++   V + QS+SS  S
Sbjct: 173 DKNNKMPE-NSKKRMRDSGDVQK-NKRNVKKKSQKSVSSNNEEDNNGGVVNGQSSSSCSS 232

Query: 194 EDESNASFELNNSRSNPKETA------KTRASRGSATDPQSLYARRRRERINERLKILQN 253
           EDES AS ELN S S+PK +A      K RASRGSATDPQSLYAR+RRERINERLKILQN
Sbjct: 233 EDESIASQELNGS-SSPKGSAALNSKDKARASRGSATDPQSLYARKRRERINERLKILQN 292

Query: 254 LVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLN 288
           LVPNGTKVDISTMLEEAV+YVKFLQLQIKLLSSDDLWMYAP+AYNGMDIGL+
Sbjct: 293 LVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPLAYNGMDIGLD 337

[Close]
BLAST of Cp4.1LG04g07620 vs. NCBI nr
Match: gi|590687323|ref|XP_007042632.1| (Basic helix-loop-helix DNA-binding superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 198.4 bits (503), Expect = 1.8e-47
Identity = 130/212 (61.32%), Postives = 153/212 (72.17%), Query Frame = 1 

Query: 88  GNDHNGGFNLEEE---DYNLQACYEAEFMKLPEEEAAMEQKRHTQLEINCKKRSRGSRDV 147
           GN    G + +E    + NL+   E+E   +P+ E   E K +   E N KKRSR S DV
Sbjct: 149 GNVEQAGKSHQEPALPNKNLEPKRESE---IPQPEPVTEIKSNNISE-NSKKRSRSSGDV 208

Query: 148 EK--WNERSKKTQKLTSSNNTEEDGNAVHSKQSTSSYCSEDESNASFELNNSRSNPKETA 207
           +K   N RSKK Q   S+ N ++DGNA  + QS++S  S+D+SNAS ELN  ++      
Sbjct: 209 QKNRQNARSKKNQGSASTTNNDKDGNAGLNGQSSASCSSDDDSNASQELNGGQAALNLNG 268

Query: 208 KTRASRGSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQ 267
           KTRASRG+ATDPQSLYAR+RRERINERL+ILQNLVPNGTKVDISTMLEEAVQYVKFLQLQ
Sbjct: 269 KTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQ 328

Query: 268 IKLLSSDDLWMYAPIAYNGMDIGLNRTPNTSK 295
           IKLLSSDDLWMYAPIAYNGMDIGL+    T K
Sbjct: 329 IKLLSSDDLWMYAPIAYNGMDIGLDLKVATPK 356

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g07620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH085_ARATH9.9e-3860.34Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2 SV=1[more]
BH084_ARATH3.2e-3653.85Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2 SV=1[more]
BH054_ARATH3.9e-3450.82Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2 SV=1[more]
BH139_ARATH1.9e-3361.87Transcription factor bHLH139 OS=Arabidopsis thaliana GN=BHLH139 PE=3 SV=1[more]
BH086_ARATH5.7e-1758.75Putative transcription factor bHLH086 OS=Arabidopsis thaliana GN=BHLH86 PE=3 SV=... [more]
BLAST of Cp4.1LG04g07620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6C1_CUCSA3.4e-6959.02Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071410 PE=4 SV=1[more]
A5CAE3_VITVI6.7e-4959.91Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021999 PE=4 SV=1[more]
A0A061E855_THECC1.3e-4761.32Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma ca... [more]
B9GI92_POPTR1.4e-4657.71Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0001s30150... [more]
A5B2R9_VITVI4.0e-4651.16Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007899 PE=4 SV=1[more]
BLAST of Cp4.1LG04g07620 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G33880.15.6e-3960.34 ROOT HAIR DEFECTIVE 6-LIKE 2[more]
AT1G27740.12.2e-3550.82 root hair defective 6-like 4[more]
AT5G43175.11.1e-3461.87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT2G14760.31.1e-3450.26 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT5G37800.13.2e-1858.75 RHD SIX-LIKE 1[more]
BLAST of Cp4.1LG04g07620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110067|ref|XP_008455031.1|6.8e-7155.94PREDICTED: transcription factor bHLH54 [Cucumis melo][more]
gi|700188619|gb|KGN43852.1|4.9e-6959.02hypothetical protein Csa_7G071410 [Cucumis sativus][more]
gi|147866312|emb|CAN79863.1|9.6e-4959.91hypothetical protein VITISV_021999 [Vitis vinifera][more]
gi|225428979|ref|XP_002264083.1|9.6e-4959.91PREDICTED: transcription factor bHLH139 [Vitis vinifera][more]
gi|590687323|ref|XP_007042632.1|1.8e-4761.32Basic helix-loop-helix DNA-binding superfamily protein, putative [Theobroma caca... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005488 binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g07620.1Cp4.1LG04g07620.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 215..269
score: 3.3
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 220..260
score: 2.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 216..265
score: 7.2
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 210..259
score: 15
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 210..276
score: 1.44
NoneNo IPR availablePANTHERPTHR16223FAMILY NOT NAMEDcoord: 98..287
score: 2.4
NoneNo IPR availablePANTHERPTHR16223:SF9TRANSCRIPTION FACTOR BHLH139-RELATEDcoord: 98..287
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g07620Cucsa.219180Cucumber (Gy14) v1cgycpeB0602
Cp4.1LG04g07620CmaCh11G017010Cucurbita maxima (Rimu)cmacpeB154
Cp4.1LG04g07620CmaCh19G005540Cucurbita maxima (Rimu)cmacpeB539
Cp4.1LG04g07620CmoCh11G014190Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g07620CmoCh16G003420Cucurbita moschata (Rifu)cmocpeB321
Cp4.1LG04g07620Cla016091Watermelon (97103) v1cpewmB665
Cp4.1LG04g07620Csa7G071410Cucumber (Chinese Long) v2cpecuB695
Cp4.1LG04g07620MELO3C018516Melon (DHL92) v3.5.1cpemeB604
Cp4.1LG04g07620ClCG02G006780Watermelon (Charleston Gray)cpewcgB590
Cp4.1LG04g07620CSPI07G06880Wild cucumber (PI 183967)cpecpiB697
Cp4.1LG04g07620Lsi03G005730Bottle gourd (USVL1VR-Ls)cpelsiB543
Cp4.1LG04g07620Lsi03G010260Bottle gourd (USVL1VR-Ls)cpelsiB548
Cp4.1LG04g07620Lsi04G014920Bottle gourd (USVL1VR-Ls)cpelsiB552
Cp4.1LG04g07620MELO3C018516.2Melon (DHL92) v3.6.1cpemedB715
Cp4.1LG04g07620MELO3C016810.2Melon (DHL92) v3.6.1cpemedB771
Cp4.1LG04g07620MELO3C010811.2Melon (DHL92) v3.6.1cpemedB746
Cp4.1LG04g07620CsaV3_4G034980Cucumber (Chinese Long) v3cpecucB0847
Cp4.1LG04g07620CsaV3_7G007860Cucumber (Chinese Long) v3cpecucB0868
Cp4.1LG04g07620CsaV3_2G026190Cucumber (Chinese Long) v3cpecucB0834
Cp4.1LG04g07620Bhi09G002669Wax gourdcpewgoB0879
Cp4.1LG04g07620Bhi05G000898Wax gourdcpewgoB0847
Cp4.1LG04g07620Bhi04G000389Wax gourdcpewgoB0860
Cp4.1LG04g07620CsGy7G006420Cucumber (Gy14) v2cgybcpeB969
Cp4.1LG04g07620CsGy2G018480Cucumber (Gy14) v2cgybcpeB237
Cp4.1LG04g07620Carg11879Silver-seed gourdcarcpeB0266
Cp4.1LG04g07620Carg23036Silver-seed gourdcarcpeB1033
Cp4.1LG04g07620Carg16335Silver-seed gourdcarcpeB0639
Cp4.1LG04g07620Carg08121Silver-seed gourdcarcpeB0529
Cp4.1LG04g07620Carg19683Silver-seed gourdcarcpeB0409
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g07620Cp4.1LG11g01150Cucurbita pepo (Zucchini)cpecpeB133
Cp4.1LG04g07620Cp4.1LG15g04440Cucurbita pepo (Zucchini)cpecpeB269
Cp4.1LG04g07620Cp4.1LG06g01870Cucurbita pepo (Zucchini)cpecpeB497
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g07620Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG04g07620Cucurbita pepo (Zucchini)cpecpeB500
Cp4.1LG04g07620Cucurbita maxima (Rimu)cmacpeB749
Cp4.1LG04g07620Cucurbita moschata (Rifu)cmocpeB494
Cp4.1LG04g07620Cucurbita moschata (Rifu)cmocpeB703