Carg16335 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16335
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription factor
Location	Cucurbita_argyrosperma_scaffold_088 : 335828 .. 338886 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCATCTCACAGCCCCCACTGCAGAGGGAGAAGATCAATGGAGCTCTCTCAATGGAACCTTCACAGCCGATGAAGAAGAAGCGACGTTCGTGGCTCAGCTCTTCGCACCGCCCGACCCTTTCATGGCTAACCTTCATGATCTTCATCAACCTCCTTGTGAACCAGCTTCTTGTTCAAGCTTTTATAGGGTTTCACAAGAGAGTAGTGAATTCAGTGGTGGAAGTTATTGCAGCCAATTGTTGTTCTCTGGTTCTGAAAATAATGATCATTATTATTATTGCAATCCAATGGGTAATCATGATTTTAGCTTGGGAGAGCTTGGAAGCAATAACAATGGCGGATTCCACCTTGATGATCATGAGGACTCCATGAATATAGAGGCTGCTGTGGAAGAAGAGGGCCATAACCCACAAGGGAGAAGTTGCAAGAAGAGATCAAGGGGATTTGGGGATGTAAGTATTTTGTATTTTGATTCGTAATTTGATGAAATTGAAAGTTTATGAGTATAAATTATGTGCCGGTTTTATAATTGTTATGTTTCGTTCTCCTCTCTACTCGATGTGGGATTTCACAATCCACTTCTGTTCGGGGCCCAGCGTCCTCGTTGGTACTCGTTTCCTCCTCCAATCGATGTGGGCTCAGCGTCCTAGCTGGCACACCCCCTCGTGAACCCCCCTCCCCCCTTTAGGACTCAGCTTCCTCGCTGGCACATCGCTTGGTGTCTAGCTCTGATATCATTTGTAACGGCTCAAGCCCGCTGCTAGTGGATATTGTCGTCTTTTGGCTTTTCCTTTTGAGCTTCCTCTCAAGGGGTTTAAAACGTGTCCGTTAGTGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTTTCCTCTTCAACCGATGTGGGATCTCACAATTCACCCTTTTCTGGGTTCAGCGTCCTCGCTGGCACTCGTTCCTTTCTCCAATCGATGTGGGACTCCCAATCCACCACCTTTAGGGTTCAGCGTCCTTACTGGCACACCACCGTGTGTCCACTCCCCTTCAGGGCTCAGCCTCATGTTTCGTTCTCCTCTCCTACCGATATGGGATCTCACAATTCACCCCCTTCAAGGCCTAACATCCTTGCTGGCACTCGTTCCCTTCTTCAATCGATGTGGGACCCCCCAATTCATCCCCAAGGCCCAATGTCCTTGTTGGCACACCACCTTAGACTTCTGGGCTCATCCCCAAGGCCCAATGTCCTTATTGGCACATCGCCCGGTGTCCACCCCTTTAGGGCTCAGCCTTGCTGGCACATTGCCCGGTGTCTAGCTCTGATACCATTTGTCCTCCTTAGACTTTCCATTTCAGGCTTCCCCTCAGGGTATTTAAAACGCGTATGTTAGGGGAAGTATCCACACCCTTATAAAAAATGTTTCGTTCTCCTCTCCAATCGATGTGGTATCCCACAAATTCCGTCCCGTTTTTAGTGAGTTCAAGTATATACATTCTTTTATAATAGTCTAGGAGGTCTTGAATTCAGATTTGTTGTAGTTTTTGGCATCATAGTTATATTTGATTCAAGGAGAACTTGTGGGCTGATTCATTACTCTACTTGAACTTTAGTTACAGAAGAGGAGGAATGAGAAGTCAAAGAAAACTCAGAAGCTTATCACTGAAGAAGATGGCAATAATGCTGCCCATAACAGGCAAAGCACAAGCAGCTATTGCTCCGAAGACGAATCCAACGCCTCTCTCGAGCTAAATGGAGGAGTTAATAACTCGGGACCGAGTCCGAACGGGCCGACCAAATCCCGAGCCAGCAGAGGCTCAGCTACTGATCCACAGAGCCTCTATGCAAGGGTAAGACAATGGAAAAAACCTTAAGAAATAAAAACAACCATTGGAAATGAAAAGTACATTAATTTGTAATATTGTTTTGTTACAGAAAAGAAGAGAAAGAATCAATGAGAGGTTGAAAATCTTACAGACTCTTGTCCCAAATGGAACAAAGGTAAGACATAATATGAAAAGTACCTTAAAAAATACAAAGAAAAACGTTGATGTTTTGTGAGATTTCATATCGGTTAGGGAAGAGAACAAAGCATTATTCATAAGGGTGTGGAAACCTCTCCCTAGCAGATGCGTTTTAAAATTTTTTAGGGGAAGCCCGAAAGGGAAAGTCCAAGGAGGACAATATTTGCTAACGATGGGCTTGAGTTGTTACAAATAGTATCATAGCCAGACATCGGGCGATGTGGTAGCGAGGAGGCTGAGCCCCGAAGGGGGTGGATTGAGGGTCCCACATCGATTAGAGAAGGGAACGAATGCTAGCGAGAACGCTAGGCCCCAAAAGAGGTGGATTGTGAGATCTCACATCGATTGGGGAGGAGATTGAAACATTCTTTATAAGCGTGTGGAAACCTCTCTCTAGCAGACGAGTTTTAAAAACCTTGAGGGGAAGCCCAAAGGGAAAGCCGAAAGAGGACAATATCTGCTAAAGGTGAGTTTGGGCTGTCACAAAGTATTAGATCCAGACATCATGCGATGTGATAGTGAAGAGGCTGAGCCCCGAAAGGGATGGATTGGGGGTCCCACATCATTAGAGAAGAGAACGAGTGCCACCGAAAACGCTGGGTCCAAAAGGAGGGTGGATTGTGAGATCCCACATTGGATGGGGAGAAGAACGGAACATTTTTTTTTATAAGGGTGTGGAAACTGGTCTCCAAACCGATGCATTTTAAAAACTTTGAAGGAAAGTTCAAAAAAGACAATATTTGTTTTGGTGTTCAAAAAACATGTTTTAAATTATATTCTTGTCTGTTATGGGATATGTAGGTTGATATCAGCACAATGCTCGAGGAAGCTGTTCAATATGTGAAGTTTCTACAGCTTCAAATCAAGGTCATTTACAAACAAAACAAAAGCAAGAAAGTTTAGATTTTTTTTTTTGTTCTTTATTGACATCTTCATTATAAATTATTATTGCAGCTATTAAGCTCGGATGATTTATGGATGTACGCTCCGATCGCTTACAACGGAATGGATATCGGGCTGAATCCGACCCCGAACACACCGAAAGTGTTATGA

mRNA sequence

ATGGCTCATCTCACAGCCCCCACTGCAGAGGGAGAAGATCAATGGAGCTCTCTCAATGGAACCTTCACAGCCGATGAAGAAGAAGCGACGTTCGTGGCTCAGCTCTTCGCACCGCCCGACCCTTTCATGGCTAACCTTCATGATCTTCATCAACCTCCTTGTGAACCAGCTTCTTGTTCAAGCTTTTATAGGGTTTCACAAGAGAGTAGTGAATTCAGTGGTGGAAGTTATTGCAGCCAATTGTTGTTCTCTGGTTCTGAAAATAATGATCATTATTATTATTGCAATCCAATGGGTAATCATGATTTTAGCTTGGGAGAGCTTGGAAGCAATAACAATGGCGGATTCCACCTTGATGATCATGAGGACTCCATGAATATAGAGGCTGCTGTGGAAGAAGAGGGCCATAACCCACAAGGGAGAAGTTGCAAGAAGAGATCAAGGGGATTTGGGGATTTACAGAAGAGGAGGAATGAGAAGTCAAAGAAAACTCAGAAGCTTATCACTGAAGAAGATGGCAATAATGCTGCCCATAACAGGCAAAGCACAAGCAGCTATTGCTCCGAAGACGAATCCAACGCCTCTCTCGAGCTAAATGGAGGAGTTAATAACTCGGGACCGAGTCCGAACGGGCCGACCAAATCCCGAGCCAGCAGAGGCTCAGCTACTGATCCACAGAGCCTCTATGCAAGGCTATTAAGCTCGGATGATTTATGGATGTACGCTCCGATCGCTTACAACGGAATGGATATCGGGCTGAATCCGACCCCGAACACACCGAAAGTGTTATGA

Coding sequence (CDS)

ATGGCTCATCTCACAGCCCCCACTGCAGAGGGAGAAGATCAATGGAGCTCTCTCAATGGAACCTTCACAGCCGATGAAGAAGAAGCGACGTTCGTGGCTCAGCTCTTCGCACCGCCCGACCCTTTCATGGCTAACCTTCATGATCTTCATCAACCTCCTTGTGAACCAGCTTCTTGTTCAAGCTTTTATAGGGTTTCACAAGAGAGTAGTGAATTCAGTGGTGGAAGTTATTGCAGCCAATTGTTGTTCTCTGGTTCTGAAAATAATGATCATTATTATTATTGCAATCCAATGGGTAATCATGATTTTAGCTTGGGAGAGCTTGGAAGCAATAACAATGGCGGATTCCACCTTGATGATCATGAGGACTCCATGAATATAGAGGCTGCTGTGGAAGAAGAGGGCCATAACCCACAAGGGAGAAGTTGCAAGAAGAGATCAAGGGGATTTGGGGATTTACAGAAGAGGAGGAATGAGAAGTCAAAGAAAACTCAGAAGCTTATCACTGAAGAAGATGGCAATAATGCTGCCCATAACAGGCAAAGCACAAGCAGCTATTGCTCCGAAGACGAATCCAACGCCTCTCTCGAGCTAAATGGAGGAGTTAATAACTCGGGACCGAGTCCGAACGGGCCGACCAAATCCCGAGCCAGCAGAGGCTCAGCTACTGATCCACAGAGCCTCTATGCAAGGCTATTAAGCTCGGATGATTTATGGATGTACGCTCCGATCGCTTACAACGGAATGGATATCGGGCTGAATCCGACCCCGAACACACCGAAAGTGTTATGA

Protein sequence

MAHLTAPTAEGEDQWSSLNGTFTADEEEATFVAQLFAPPDPFMANLHDLHQPPCEPASCSSFYRVSQESSEFSGGSYCSQLLFSGSENNDHYYYCNPMGNHDFSLGELGSNNNGGFHLDDHEDSMNIEAAVEEEGHNPQGRSCKKRSRGFGDLQKRRNEKSKKTQKLITEEDGNNAAHNRQSTSSYCSEDESNASLELNGGVNNSGPSPNGPTKSRASRGSATDPQSLYARLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL

Homology

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BLAST of Carg16335 vs. NCBI nr
Match: XP_023511608.1 (transcription factor bHLH85-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 471.1 bits (1211), Expect = 2.5e-129
Identity = 248/307 (80.78%), Postives = 252/307 (82.08%), Query Frame = 0


Query: 1   MAHLTAPTAEGEDQWSSLNGTFTADEEEATFVAQLFAPPDPFMANLHDLHQPPCEPASCS 60
           MAHLTAP AEG+DQWSSLNG FTADEEEATFVAQLFAPPDPFMANLHDLHQPPCEPASCS
Sbjct: 1   MAHLTAPIAEGDDQWSSLNGAFTADEEEATFVAQLFAPPDPFMANLHDLHQPPCEPASCS 60

Query: 61  SFYRVSQESSEFSGGSYCSQLLFSGSENNDHYYYCNPMGNHDFSLGELGSNNNGGFHLDD 120
           SFYRVSQESSEFSGGSYCSQLLFSGSE+NDHYYYCNPM NHDFSLGELGSNNNGGFHL+D
Sbjct: 61  SFYRVSQESSEFSGGSYCSQLLFSGSESNDHYYYCNPMDNHDFSLGELGSNNNGGFHLED 120

Query: 121 HEDSMNIEAAVEEEGHNPQGRSCKKRSRGFGDLQKRRNEKSKKTQKLITEEDGNNAAHNR 180
           HEDSMNIEA V EEG NP   + KKRSRGFGDLQKRRNEKSKKTQKLITEEDGNNAAHNR
Sbjct: 121 HEDSMNIEAVVGEEGGNPLDINAKKRSRGFGDLQKRRNEKSKKTQKLITEEDGNNAAHNR 180

Query: 181 QSTSSYCSEDESNASLELNGGVNNSGPSPNGPTKSRASRGSATDPQSLYAR--------- 240
           QSTSSYCSEDESNASLELNGGVNNSGPSPN PTKSRASRGSATDPQSLYAR         
Sbjct: 181 QSTSSYCSEDESNASLELNGGVNNSGPSPNRPTKSRASRGSATDPQSLYARRRRERINER 240

Query: 241 -----------------------------------LLSSDDLWMYAPIAYNGMDIGLNPT 264
                                              LLSSDDLWMYAPIAYNGMDIGLNPT
Sbjct: 241 LKILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPT 300

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BLAST of Carg16335 vs. NCBI nr
Match: XP_022953029.1 (transcription factor bHLH85-like [Cucurbita moschata])

HSP 1 Score: 460.7 bits (1184), Expect = 3.4e-126
Identity = 245/307 (79.80%), Postives = 250/307 (81.43%), Query Frame = 0


Query: 1   MAHLTAPTAEGEDQWSSLNGTFTADEEEATFVAQLFAPPDPFMANLHDLHQPPCEPASCS 60
           MAHLTAPTAEG+DQWSSLNG FTADEEEATFVAQLFAPPDPFMANLHDLHQPPCEPASCS
Sbjct: 1   MAHLTAPTAEGDDQWSSLNGAFTADEEEATFVAQLFAPPDPFMANLHDLHQPPCEPASCS 60

Query: 61  SFYRVSQESSEFSGGSYCSQLLFSGSENNDHYYYCNPMGNHDFSLGELGSNNNGGFHLDD 120
           SFYRVSQESSEFSGGSYCSQLLFSGSENND+YYYCNPM NHDFSLGELG NNNGGF L+D
Sbjct: 61  SFYRVSQESSEFSGGSYCSQLLFSGSENNDNYYYCNPMDNHDFSLGELG-NNNGGFQLED 120

Query: 121 HEDSMNIEAAVEEEGHNPQGRSCKKRSRGFGDLQKRRNEKSKKTQKLITEEDGNNAAHNR 180
           HEDSMNIEA V EEG NP+  +CKKRSRGFGDLQKRRNEKSKKTQKLITE    NAAHNR
Sbjct: 121 HEDSMNIEAVVGEEGGNPRDINCKKRSRGFGDLQKRRNEKSKKTQKLITEXXXXNAAHNR 180

Query: 181 QSTSSYCSEDESNASLELNGGVNNSGPSPNGPTKSRASRGSATDPQSLYAR--------- 240
           QSTSSYCSEDESNASLELNGGVNNSGPSPNGPTKSRASRGSATDPQSLYAR         
Sbjct: 181 QSTSSYCSEDESNASLELNGGVNNSGPSPNGPTKSRASRGSATDPQSLYARKRRERINER 240

Query: 241 -----------------------------------LLSSDDLWMYAPIAYNGMDIGLNPT 264
                                              LLSSDDLWMYAPIAYNGMDIGLNPT
Sbjct: 241 LKILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPT 300

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BLAST of Carg16335 vs. NCBI nr
Match: XP_022972549.1 (transcription factor bHLH139-like [Cucurbita maxima])

HSP 1 Score: 351.7 bits (901), Expect = 2.2e-93
Identity = 193/267 (72.28%), Postives = 199/267 (74.53%), Query Frame = 0


Query: 43  MANLHDLHQPPCEPASCSSFYRVSQESSEFSGGSYCSQLLFSGSEN--NDHYYYCNPMGN 102
           MANLHDLHQPPCEPASCSSFYRVSQESSEFSGGSYCSQLLFSGSEN  ND+YYYCNPM N
Sbjct: 1   MANLHDLHQPPCEPASCSSFYRVSQESSEFSGGSYCSQLLFSGSENNDNDNYYYCNPMDN 60

Query: 103 HDFSLGELGSNNNGGFHLDDHEDSMNIEAAVEEEGHNPQGRSCKKRSRGFGDLQKRRNEK 162
           HDFSLGELG+NNNGGF L+DHEDSMNIEA + EEG NP+  +CKKRSRG GDLQKRRNEK
Sbjct: 61  HDFSLGELGNNNNGGFQLEDHEDSMNIEAVLGEEGGNPRDINCKKRSRGSGDLQKRRNEK 120

Query: 163 SKKTQKLITEEDGNNAAHNRQSTSSYCSEDESNASLELNGGVNNSGPSPNGPTKSRASRG 222
           S              AAHNRQSTSSYCSEDESNASLELNGGVNNSGPSPNGPTKSRASRG
Sbjct: 121 SXXXXXXXXXXXXXXAAHNRQSTSSYCSEDESNASLELNGGVNNSGPSPNGPTKSRASRG 180

Query: 223 SATDPQSLYAR--------------------------------------------LLSSD 264
           SATDPQSLYAR                                            LLSSD
Sbjct: 181 SATDPQSLYARRRRERINERLKILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSD 240

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BLAST of Carg16335 vs. NCBI nr
Match: XP_022148846.1 (transcription factor bHLH84 [Momordica charantia])

HSP 1 Score: 211.5 bits (537), Expect = 3.6e-51
Identity = 159/320 (49.69%), Postives = 179/320 (55.94%), Query Frame = 0


Query: 1   MAHLTAPTAEGEDQWSSLNGTFTADEEEATFVAQLFAPPDPFMANLHDLHQPPCEPASCS 60
           M  LT   AEGE  WSSL+GT TA EE A                        C P    
Sbjct: 1   MEQLTGAIAEGE--WSSLSGTCTA-EEAAXXXXXXXXXXXXXXXXXXXXXXXYCSP---- 60

Query: 61  SFYRVSQESSEFSGG--SYCSQLLFSGSENNDHYYYCNPMGNHDFSLGELGSNNNGGFHL 120
           SFYR+SQESSEFSGG  S CS LLF  +ENN +             +G+ G  NNGGFHL
Sbjct: 61  SFYRLSQESSEFSGGSQSQCSHLLFP-TENNCY-------------IGDFG--NNGGFHL 120

Query: 121 DDHEDSM---------NIEAAVEEEGHNP-QGRSCKKRSRGFGDLQKRRNEKSKKTQKLI 180
           +D + ++         N+EAA+EEE HN  Q  + KKRS G G++QKRRNE+SKKTQKL 
Sbjct: 121 EDEDCNLQGYCEPELTNLEAAMEEEEHNQLQLENSKKRSWGSGEVQKRRNERSKKTQKLT 180

Query: 181 T---EEDGNNAAHNRQSTSSYCSEDESNASLELNGGVNNSGPSPNGPTKSRASRGSATDP 240
           +    EDG NA  +RQSTS+YCSEDESNAS E NGG NNS  SP GPTKSRASRGSATDP
Sbjct: 181 SNSNSEDG-NAGPSRQSTSNYCSEDESNASQEPNGGANNSRSSPKGPTKSRASRGSATDP 240

Query: 241 QSLYAR--------------------------------------------LLSSDDLWMY 262
           QSLYAR                                            LLSSDDLWMY
Sbjct: 241 QSLYARKRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLRLQIKLLSSDDLWMY 296

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BLAST of Carg16335 vs. NCBI nr
Match: XP_023530173.1 (transcription factor bHLH54-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.1 bits (510), Expect = 4.8e-48
Identity = 150/326 (46.01%), Postives = 173/326 (53.07%), Query Frame = 0


Query: 1   MAHLTAPTAEGEDQWSSLNGTFTADEEEATFVAQLF--APPDPFMANLHDLHQPPCEPAS 60
           M  L  P  E  DQWSSLNG FTADEE ATF+AQLF    PDPFMA L DLH        
Sbjct: 1   MEQLRGPIVEDGDQWSSLNGVFTADEEAATFMAQLFNSTAPDPFMAAL-DLH-------- 60

Query: 61  CSSFYRVSQESSEFSGGSYCSQLLFSGSENNDHYYYCNPMGNHDFSLGELGSNNNGGFHL 120
                                        NN    YCNPM   +F LGELG+++NGGF+L
Sbjct: 61  -----------------------------NN----YCNPM---NFCLGELGNDHNGGFNL 120

Query: 121 DDHEDSMNI------------EAAVEEEGHNPQGRSCKKRSRGFGDLQ-KRRNEKSKKTQ 180
           ++ + ++              EAA+E++ H     +CKKRSRG  D+  ++ NE+SKKTQ
Sbjct: 121 EEEDYNLQACYEAEFMKLPEEEAAMEQKRHTQLEINCKKRSRGSRDVSVEKWNERSKKTQ 180

Query: 181 KLI----TEEDGNNAAHNRQSTSSYCSEDESNASLELNGGVNNSGPSPNGPTKSRASRGS 240
           KL     TEEDG NA H++QSTSSYCSEDESNAS EL    NNS  +P    K+RASRGS
Sbjct: 181 KLTSSNNTEEDG-NAVHSKQSTSSYCSEDESNASFEL----NNSRSNPKETAKTRASRGS 240

Query: 241 ATDPQSLYAR--------------------------------------------LLSSDD 264
           ATDPQSLYAR                                            LLSSDD
Sbjct: 241 ATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDD 276

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BLAST of Carg16335 vs. TAIR10
Match: AT2G14760.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-09
Identity = 97/345 (28.12%), Postives = 141/345 (40.87%), Query Frame = 0


Query: 10  EGEDQWSS-LNGTFTADEEEATFVAQLFA--------PPDPFMANLHDLHQPPCEPASCS 69
           E   +WS+ L G +T   EEA F+ QL A              A L   H    + +  +
Sbjct: 2   EAMGEWSTGLGGIYT---EEADFMNQLLASYEQPCGGSSSETTATLTAYHH---QGSQWN 61

Query: 70  SFYRVSQESSEFSGGSYCSQLLFSGSENNDHYYYCNPMGNHDFSLGELGSNNNGGFH--- 129
             +  SQESS +SG  YC+ +     +NN        +  + + +GE  S  +   +   
Sbjct: 62  GGFCFSQESSSYSG--YCAAMPRQEEDNNG--MEDATINTNLYLVGEETSECDATEYSGK 121

Query: 130 --------LDDHEDSM-----NIEAAVEEEGHNPQGRSCKKRSRGFGDLQKRRNEKSKKT 189
                    ++H+ SM     ++    +E+  N Q  S KKR+R     + +R  K++++
Sbjct: 122 SLLPLETVAENHDHSMLQPENSLTTTTDEKMFN-QCESSKKRTRATTTDKNKRANKARRS 181

Query: 190 QKLIT---------EEDGNNAAHNRQST------SSYCSEDESNAS---LELNGGVNNSG 249
           QK +          EE+    A  ++ T       + CS+DESN     L    G ++  
Sbjct: 182 QKCVEMSGENENSGEEEYTEKAAGKRKTKPLKPQKTCCSDDESNGGDTFLSKEDGEDSKA 241

Query: 250 PSPNGPTKSRASRGSATDPQSLYAR----------------------------------- 255
            + NG  K+RASRG+ATDPQSLYAR                                   
Sbjct: 242 LNLNG--KTRASRGAATDPQSLYARLKQLNKVHCMMVQKRRERINERLRILQHLVPNGTK 301

[Close]

BLAST of Carg16335 vs. TAIR10
Match: AT4G33880.1 (ROOT HAIR DEFECTIVE 6-LIKE 2)

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-09
Identity = 37/85 (43.53%), Postives = 41/85 (48.24%), Query Frame = 0


Query: 214 KSRASRGSATDPQSLYAR------------------------------------------ 255
           K+RASRG+ATDPQSLYAR                                          
Sbjct: 265 KTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQ 324

[Close]

BLAST of Carg16335 vs. TAIR10
Match: AT5G43175.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-06
Identity = 48/146 (32.88%), Postives = 67/146 (45.89%), Query Frame = 0


Query: 153 LQKRRNEKSKKTQKLITEEDGNNAAHNRQSTSSYCSEDESNASLELNGGVNNSGPSPNGP 212
           L+ R+ +K      L+TE     A  + QS SSY S D+  A     G V+N+  S    
Sbjct: 78  LKPRKKQKLSSESNLVTEP--KTAWRDGQSLSSYNSSDDEKAL----GLVSNTSKSLK-- 137

Query: 213 TKSRASRGSATDPQSLYAR----------------------------------------- 255
            K++A+RG A+DPQSLYAR                                         
Sbjct: 138 RKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQL 197

[Close]

BLAST of Carg16335 vs. TAIR10
Match: AT1G27740.1 (root hair defective 6-like 4)

HSP 1 Score: 49.3 bits (116), Expect = 4.2e-06
Identity = 51/160 (31.87%), Postives = 71/160 (44.38%), Query Frame = 0


Query: 143 CKKRSRGFGDLQKRRNEKSKKTQKLITE----EDGNNAAHNRQSTSSYCSEDESNASLEL 202
           CK  S    D+ ++   KSKK Q++ +E    ++ N    + QS S+  S D+  AS+  
Sbjct: 107 CKTNSN--CDVTRQELAKSKKKQRVSSESNTVDESNTNWVDGQSLSN--SSDDEKASVTS 166

Query: 203 NGGVNNSGPSPNGPTKSRASRGSATDPQSLYAR--------------------------- 255
             G            K+RA++G+ATDPQSLYAR                           
Sbjct: 167 VKG------------KTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDIST 226

[Close]

BLAST of Carg16335 vs. Swiss-Prot
Match: sp|Q7XHI9|BH084_ARATH (Transcription factor bHLH84 OS=Arabidopsis thaliana OX=3702 GN=BHLH84 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-09
Identity = 97/332 (29.22%), Postives = 141/332 (42.47%), Query Frame = 0


Query: 10  EGEDQWSS-LNGTFTADEEEATFVAQLFA--------PPDPFMANLHDLHQPPCEPASCS 69
           E   +WS+ L G +T   EEA F+ QL A              A L   H    + +  +
Sbjct: 2   EAMGEWSTGLGGIYT---EEADFMNQLLASYEQPCGGSSSETTATLTAYHH---QGSQWN 61

Query: 70  SFYRVSQESSEFSGGSYCSQLLFSGSENNDHYYYCNPMGNHDFSLGELGSNNNGGFH--- 129
             +  SQESS +SG  YC+ +     +NN        +  + + +GE  S  +   +   
Sbjct: 62  GGFCFSQESSSYSG--YCAAMPRQEEDNNG--MEDATINTNLYLVGEETSECDATEYSGK 121

Query: 130 --------LDDHEDSM-----NIEAAVEEEGHNPQGRSCKKRSRGFGDLQKRRNEKSKKT 189
                    ++H+ SM     ++    +E+  N Q  S KKR+R     + +R  K++++
Sbjct: 122 SLLPLETVAENHDHSMLQPENSLTTTTDEKMFN-QCESSKKRTRATTTDKNKRANKARRS 181

Query: 190 QKLIT---------EEDGNNAAHNRQST------SSYCSEDESNAS---LELNGGVNNSG 249
           QK +          EE+    A  ++ T       + CS+DESN     L    G ++  
Sbjct: 182 QKCVEMSGENENSGEEEYTEKAAGKRKTKPLKPQKTCCSDDESNGGDTFLSKEDGEDSKA 241

Query: 250 PSPNGPTKSRASRGSATDPQSLYAR----------------------------------- 255
            + NG  K+RASRG+ATDPQSLYAR                                   
Sbjct: 242 LNLNG--KTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQY 301

[Close]

BLAST of Carg16335 vs. Swiss-Prot
Match: sp|Q84WK0|BH085_ARATH (Transcription factor bHLH85 OS=Arabidopsis thaliana OX=3702 GN=BHLH85 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.4e-08
Identity = 37/85 (43.53%), Postives = 41/85 (48.24%), Query Frame = 0


Query: 214 KSRASRGSATDPQSLYAR------------------------------------------ 255
           K+RASRG+ATDPQSLYAR                                          
Sbjct: 265 KTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQ 324

[Close]

BLAST of Carg16335 vs. Swiss-Prot
Match: sp|Q3E7L7|BH139_ARATH (Transcription factor bHLH139 OS=Arabidopsis thaliana OX=3702 GN=BHLH139 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.5e-05
Identity = 48/146 (32.88%), Postives = 67/146 (45.89%), Query Frame = 0


Query: 153 LQKRRNEKSKKTQKLITEEDGNNAAHNRQSTSSYCSEDESNASLELNGGVNNSGPSPNGP 212
           L+ R+ +K      L+TE     A  + QS SSY S D+  A     G V+N+  S    
Sbjct: 78  LKPRKKQKLSSESNLVTEP--KTAWRDGQSLSSYNSSDDEKAL----GLVSNTSKSLK-- 137

Query: 213 TKSRASRGSATDPQSLYAR----------------------------------------- 255
            K++A+RG A+DPQSLYAR                                         
Sbjct: 138 RKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQL 197

[Close]

BLAST of Carg16335 vs. Swiss-Prot
Match: sp|Q8LEG1|BH054_ARATH (Transcription factor bHLH54 OS=Arabidopsis thaliana OX=3702 GN=BHLH54 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 7.6e-05
Identity = 51/160 (31.87%), Postives = 71/160 (44.38%), Query Frame = 0


Query: 143 CKKRSRGFGDLQKRRNEKSKKTQKLITE----EDGNNAAHNRQSTSSYCSEDESNASLEL 202
           CK  S    D+ ++   KSKK Q++ +E    ++ N    + QS S+  S D+  AS+  
Sbjct: 107 CKTNSN--CDVTRQELAKSKKKQRVSSESNTVDESNTNWVDGQSLSN--SSDDEKASVTS 166

Query: 203 NGGVNNSGPSPNGPTKSRASRGSATDPQSLYAR--------------------------- 255
             G            K+RA++G+ATDPQSLYAR                           
Sbjct: 167 VKG------------KTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDIST 226

[Close]

BLAST of Carg16335 vs. TrEMBL
Match: tr|A0A0A0K6C1|A0A0A0K6C1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071410 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 126/330 (38.18%), Postives = 146/330 (44.24%), Query Frame = 0


Query: 18  LNGTFTADEE-------EATFVAQLF------APPDPFMANLHDLHQPPCEPASCSSFYR 77
           +NG+F A+ E         TF+AQL       +PPDPFMA L         P+S +  Y 
Sbjct: 5   INGSFIANHEXXXXXXXXXTFMAQLLFNTKANSPPDPFMATL----SYDQTPSSSTFNYS 64

Query: 78  VSQESSEFSGGSYCSQLLFSGSENNDHYYYCNPMGNHDFSLGELG---SNNNGG-FHLDD 137
           +SQE                                  FSLGELG   SN+NG  FH+  
Sbjct: 65  LSQE-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSLGELGTYYSNDNGSDFHVQV 124

Query: 138 HEDSMNIEAA----------------VEEEG--HNPQGRSCKKRSRG-FGD-LQKRRNEK 197
            EDSMN+E +                 EEE   ++    +CKKRSRG FGD +QK RNE+
Sbjct: 125 PEDSMNVEVSENNLQPCFEEAELIKLPEEEAAHYHIDQINCKKRSRGEFGDHVQKGRNER 184

Query: 198 SKKTQKL-----ITEEDGNNAAHNRQSTSSYCSEDESNASLELNGGVNNSGPSPNGPTKS 257
           SKK QKL      TEEDG NA  +RQSTS+YCSEDE    L+ NGG              
Sbjct: 185 SKKAQKLTSSTNTTEEDG-NAGLSRQSTSTYCSEDEXXXXLDQNGGXXXXXXXXXXXXXX 244

Query: 258 RASRGSATDPQSLYAR-------------------------------------------- 262
                  TDPQSLYAR                                            
Sbjct: 245 XXXXXXXTDPQSLYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIK 304

[Close]

BLAST of Carg16335 vs. TrEMBL
Match: tr|A0A2C9V4L6|A0A2C9V4L6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G083200 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.9e-22
Identity = 123/345 (35.65%), Postives = 160/345 (46.38%), Query Frame = 0


Query: 12  EDQWSSLNGTFTADEEEATFVAQL---------FAPPDPFMANLHDLHQPPC---EPASC 71
           E +WSSL+G + +  EEA F+AQL         F  P  F ++ HD         E +  
Sbjct: 9   EGEWSSLSGMYRS--EEAVFLAQLLGNNDSSSCFGVPSSFWSS-HDSEMNMAAVNEDSVD 68

Query: 72  SSFYRVSQESSEFSGGSYCSQLLFSGSENNDHY--------YYCNPMGNHDFSLGELGSN 131
           ++FY  SQ SS +SGG   S  LF+ S    ++           N   + DF +G++   
Sbjct: 69  TNFYNFSQGSSCYSGG---SNFLFATSSQESYFLNDSHAVLVSNNSSMSMDFCVGDV--- 128

Query: 132 NNGGFHLDDHEDSMNIEAA---VEEEGHNPQGRSC------------------------- 191
            N   +L + +D +N E +   VEE G N Q  +                          
Sbjct: 129 INTVSYLVEGDDCLNQEISNGNVEEYGGNQQPEAADFPDKQEMLVPEQLTEDKSGKPPEI 188

Query: 192 -KKRSRGFGDLQK-RRNEKSKKTQKLITEEDGN---NAAHNRQSTSSYCSEDESNASLEL 251
            KKRSR  GD QK +RN +SKK+QKL +  +     NA  N  +TSS CSED+SN S EL
Sbjct: 189 SKKRSRNAGDAQKNKRNARSKKSQKLASGNNNAEECNAGVNVPATSSCCSEDDSNGSHEL 248

Query: 252 NGGVNNS-----GPSPNGPTKSRASRGSATDPQSLYAR---------------------- 255
           NGG N+S      P+ N   ++RASRG+ATDPQSLYAR                      
Sbjct: 249 NGGANSSLSLKGTPALNLNGRTRASRGAATDPQSLYARKRRERINERLKILQNLVPNGTK 308

[Close]

BLAST of Carg16335 vs. TrEMBL
Match: tr|A0A1S3C161|A0A1S3C161_CUCME (transcription factor bHLH54 OS=Cucumis melo OX=3656 GN=LOC103495305 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.5e-17
Identity = 87/216 (40.28%), Postives = 92/216 (42.59%), Query Frame = 0


Query: 116 FHLDDHEDSMNIEAA-------------------VEEEGHNPQGRSCKKRSRG-FGD--L 175
           FHL   EDSMN+E +                    EE  H     +CKKRSRG FGD  +
Sbjct: 117 FHLQVPEDSMNVEVSENNSLQPCFEEADQLIKLPEEEAAHYQTEINCKKRSRGEFGDHHV 176

Query: 176 QKRRNEKSKKTQKLI----TEEDGNNAAHNRQSTSSYCSEDESNASLELNGGVNNSGPSP 235
           QK RNE+ KKTQKL     TEEDGN                                   
Sbjct: 177 QKGRNERGKKTQKLTSSTNTEEDGNGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 236

Query: 236 NGPTKSRASRGSATDPQSLYAR-------------------------------------- 262
            GP KSRASRGSATDPQSLYAR                                      
Sbjct: 237 XGPNKSRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKF 296

[Close]

BLAST of Carg16335 vs. TrEMBL
Match: tr|A0A200R314|A0A200R314_9MAGN (Myc-type OS=Macleaya cordata OX=56857 GN=BVC80_9047g65 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.1e-16
Identity = 70/159 (44.03%), Postives = 86/159 (54.09%), Query Frame = 0


Query: 152 DLQK-RRNEKSKKTQKLITEEDGNNAAHNRQSTSSYCSEDESNASLELNGGVNNSGPSPN 211
           D+Q+ ++N + KK Q+L  +E+  NA  NRQS+ SY SEDESNAS ELNGG  ++    +
Sbjct: 215 DVQRNKKNLQMKKNQQLGKDEEETNAGLNRQSSCSYSSEDESNASQELNGGSTSTNSKKS 274

Query: 212 GPT----KSRASRGSATDPQSLYAR----------------------------------- 262
           G      K+RASRGSATDPQSLYAR                                   
Sbjct: 275 GALNLNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVEY 334

[Close]

BLAST of Carg16335 vs. TrEMBL
Match: tr|A0A067L7P3|A0A067L7P3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16319 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-16
Identity = 88/234 (37.61%), Postives = 114/234 (48.72%), Query Frame = 0


Query: 84  SGSENNDHYYYCNPMGNHDFSLGELGSNNNGGFHLDD------HEDSMNIEAAVEEEGHN 143
           SG   N+   +   M  +D S  E+ + N   F L D       E  M +    +E+  N
Sbjct: 16  SGIYTNEEADFLAQMLGYDCSNQEISNGNLDDFILSDQNLQPKREREMLVIEPSKEDKSN 75

Query: 144 PQGRSCKKRSRGFGDLQK-RRNEKSKKTQKLITEEDGNNAAHNRQSTSSYCSEDESNASL 203
                 +KRS+  GD QK +RN + KK++KL   ++ +NA  +  ++SS  SED+SNAS 
Sbjct: 76  SLSEVPRKRSQSAGDTQKSKRNARFKKSKKLSNNDEESNAGLSGPASSSCWSEDDSNASH 135

Query: 204 ELNGGVNNSGPS-----PNGPTKSRASRGSATDPQSLYAR-------------------- 262
           ELNGGV +S  S      N   K+RASRGSATDPQSLYAR                    
Sbjct: 136 ELNGGVISSMSSKGTEAANLNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNG 195

The following BLAST results are available for this feature:

BLAST of Carg16335 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511608.1	2.5e-129	80.78	transcription factor bHLH85-like [Cucurbita pepo subsp. pepo]	[more]
XP_022953029.1	3.4e-126	79.80	transcription factor bHLH85-like [Cucurbita moschata]	[more]
XP_022972549.1	2.2e-93	72.28	transcription factor bHLH139-like [Cucurbita maxima]	[more]
XP_022148846.1	3.6e-51	49.69	transcription factor bHLH84 [Momordica charantia]	[more]
XP_023530173.1	4.8e-48	46.01	transcription factor bHLH54-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg16335 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14760.3	3.1e-09	28.12	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G33880.1	4.1e-09	43.53	ROOT HAIR DEFECTIVE 6-LIKE 2	[more]
AT5G43175.1	2.5e-06	32.88	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G27740.1	4.2e-06	31.88	root hair defective 6-like 4	[more]

BLAST of Carg16335 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q7XHI9\|BH084_ARATH	1.8e-09	29.22	Transcription factor bHLH84 OS=Arabidopsis thaliana OX=3702 GN=BHLH84 PE=1 SV=1	[more]
sp\|Q84WK0\|BH085_ARATH	7.4e-08	43.53	Transcription factor bHLH85 OS=Arabidopsis thaliana OX=3702 GN=BHLH85 PE=2 SV=1	[more]
sp\|Q3E7L7\|BH139_ARATH	4.5e-05	32.88	Transcription factor bHLH139 OS=Arabidopsis thaliana OX=3702 GN=BHLH139 PE=3 SV=...	[more]
sp\|Q8LEG1\|BH054_ARATH	7.6e-05	31.88	Transcription factor bHLH54 OS=Arabidopsis thaliana OX=3702 GN=BHLH54 PE=2 SV=1	[more]

BLAST of Carg16335 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K6C1\|A0A0A0K6C1_CUCSA	1.6e-23	38.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071410 PE=4 SV=1	[more]
tr\|A0A2C9V4L6\|A0A2C9V4L6_MANES	3.9e-22	35.65	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G083200 PE=4 SV=...	[more]
tr\|A0A1S3C161\|A0A1S3C161_CUCME	6.5e-17	40.28	transcription factor bHLH54 OS=Cucumis melo OX=3656 GN=LOC103495305 PE=4 SV=1	[more]
tr\|A0A200R314\|A0A200R314_9MAGN	1.1e-16	44.03	Myc-type OS=Macleaya cordata OX=56857 GN=BVC80_9047g65 PE=4 SV=1	[more]
tr\|A0A067L7P3\|A0A067L7P3_JATCU	1.4e-16	37.61	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16319 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16335-RA	Carg16335-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..224
None	No IPR available	PANTHER	PTHR16223	FAMILY NOT NAMED	coord: 134..231
None	No IPR available	PANTHER	PTHR16223:SF105	TRANSCRIPTION FACTOR BHLH84-RELATED	coord: 134..231
None	No IPR available	PANTHER	PTHR16223:SF105	TRANSCRIPTION FACTOR BHLH84-RELATED	coord: 231..254
None	No IPR available	PANTHER	PTHR16223	FAMILY NOT NAMED	coord: 231..254

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16335	Cla016091	Watermelon (97103) v1	carwmB0455
Carg16335	Csa7G071410	Cucumber (Chinese Long) v2	carcuB0487
Carg16335	MELO3C018516	Melon (DHL92) v3.5.1	carmeB0460
Carg16335	ClCG02G006780	Watermelon (Charleston Gray)	carwcgB0445
Carg16335	CSPI07G06880	Wild cucumber (PI 183967)	carcpiB0493
Carg16335	Cucsa.219180	Cucumber (Gy14) v1	carcgyB0524
Carg16335	CmaCh19G005540	Cucurbita maxima (Rimu)	carcmaB0632
Carg16335	CmaCh11G017010	Cucurbita maxima (Rimu)	carcmaB0630
Carg16335	CmoCh11G014190	Cucurbita moschata (Rifu)	carcmoB0612
Carg16335	Lsi03G005730	Bottle gourd (USVL1VR-Ls)	carlsiB411
Carg16335	Cp4.1LG15g04440	Cucurbita pepo (Zucchini)	carcpeB0637
Carg16335	Cp4.1LG04g07620	Cucurbita pepo (Zucchini)	carcpeB0639
Carg16335	CsGy7G006420	Cucumber (Gy14) v2	carcgybB0464
Carg16335	MELO3C018516.2	Melon (DHL92) v3.6.1	carmedB0463
Carg16335	Cla97C02G033780	Watermelon (97103) v2	carwmbB0477
Carg16335	Bhi05G000897	Wax gourd	carwgoB0550
Carg16335	Bhi04G000389	Wax gourd	carwgoB0552

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16335	Carg23036	Silver-seed gourd	carcarB456

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16335	Watermelon (97103) v2	carwmbB0478
Carg16335	Watermelon (97103) v2	carwmbB0480
Carg16335	Wax gourd	carwgoB0548
Carg16335	Wax gourd	carwgoB0555
Carg16335	Silver-seed gourd	carcarB402
Carg16335	Cucurbita maxima (Rimu)	carcmaB0634
Carg16335	Cucurbita moschata (Rifu)	carcmoB0615
Carg16335	Cucurbita moschata (Rifu)	carcmoB0616
Carg16335	Cucumber (Chinese Long) v3	carcucB0490
Carg16335	Bottle gourd (USVL1VR-Ls)	carlsiB414