Cp4.1LG04g07610 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g07610
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionLIM transcription factor
LocationCp4.1LG04 : 4048868 .. 4050209 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGTTAGCGTTGAATTAGTATTGTTATCTTCTAATTTAAGCCAAAAATTAGTTTAATATCCATTGGCTTATCGTTAATTAAGGTTTGAATCACTAATCTCCACCTTCCATCTCTTCATCTCTTTCATTATTTATACACACATCCCTTCAACACATTCTCACAACACAAAATAAAACAAGAGAGTGGCATTCACATTGGCATTTGCATAGCCACATAGCCACTCTCCCGGTCTCTGTCTCCGTGTCGGTTTTGTTCGTTCGGTCGATCGATTGTGTTTCAAGGGGACGGTGTAGGGAACCCGTGTGAGGTACACTAAAGGAAGCCATGGCTAGCTTTTCAGGAACCACACAGAAGTGCATGGCTTGTGACAAGACCGTTTATCTTGTCGATAAGCTTACCGCCGATAATAGGGTCTTCCATAAGGCTTGCTTCCGATGCTACCATTGCAAGGGCACTCTCAAGGTAATTACACGTTCTCGTCAGAGTCATGAGGTTCAAATCTTCATATTTCATTTTAACGTCTTTCGAACATGTTGGTTTTGCAGCTTAGCAACTACTGTTCGTTCGAGGGAGTGTTGTACTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAAAGCTTCGAAGGCAATATTTCTTTATTTGTTTATAGTCGTTAAAATGTATTTTCTCGCTACTTTTTCTTCCAACATGATTCAAGACTCGAACATATGGCAAGGTTATCCATAACGTTGAGTTGCTCACGGCTCACTTGTTCAATTGGTTAGAATAAGTGCCGCACAATTGTTGTCCCACTATCGCAGAGTGTGATTGTGACCCACTTTCAATGAATATTCGAGTTCTAAAATTTAATTTCCTTTTTGTCAGGAACTCCGAAAATCGTGAAGGTAGAAAAACCCACCGACAACGAGGTATAATTTCTTCGTTTTGTAATCTACTTTTTCGACATGCTTTGTAACTATTACGGATGGATTGAGTTGGGTTGGATTGGATTATCGAACAGAAAGCGAGTGCGAAGTCAAACCTATTTGCTGGAACCCGAGACAAATGTGCAGGGTGTACGAAGACGGTTTATCCCCTTGAAAAGGTAACGGTGAACGGGACGGCGTACCATAAGAGCTGCTTCAAGTGCAGCCATGGAGGGTGCACAATAAGCCCATCAAACTACATAGCACATGAGGGGAAGCTATACTGCAAGCACCACCACATTCAACTGTTCAAGGAGAAGGGCAATTACAGCCAGCTTGAAACTGAGCGCCAAAAGAGCAATGCAGTGGCAATGAAATTAGGTGCTTCACTGGAAATTGCAGCTGAATCATAG

mRNA sequence

ATGGGAACCACACAGAAGTGCATGGCTTGTGACAAGACCGTTTATCTTGTCGATAAGCTTACCGCCGATAATAGGGTCTTCCATAAGGCTTGCTTCCGATGCTACCATTGCAAGGGCACTCTCAAGGTAATTACACGTTCTCGTCAGAGTCATGAGGTTCAAATCTTCATATTTCATTTTAACAAAGCGAGTGCGAAGTCAAACCTATTTGCTGGAACCCGAGACAAATGTGCAGGGTGTACGAAGACGGTTTATCCCCTTGAAAAGGTAACGGTGAACGGGACGGCGTACCATAAGAGCTGCTTCAAGTGCAGCCATGGAGGGTGCACAATAAGCCCATCAAACTACATAGCACATGAGGGGAAGCTATACTGCAAGCACCACCACATTCAACTGTTCAAGGAGAAGGGCAATTACAGCCAGCTTGAAACTGAGCGCCAAAAGAGCAATGCAGTGGCAATGAAATTAGGTGCTTCACTGGAAATTGCAGCTGAATCATAG

Coding sequence (CDS)

ATGGGAACCACACAGAAGTGCATGGCTTGTGACAAGACCGTTTATCTTGTCGATAAGCTTACCGCCGATAATAGGGTCTTCCATAAGGCTTGCTTCCGATGCTACCATTGCAAGGGCACTCTCAAGGTAATTACACGTTCTCGTCAGAGTCATGAGGTTCAAATCTTCATATTTCATTTTAACAAAGCGAGTGCGAAGTCAAACCTATTTGCTGGAACCCGAGACAAATGTGCAGGGTGTACGAAGACGGTTTATCCCCTTGAAAAGGTAACGGTGAACGGGACGGCGTACCATAAGAGCTGCTTCAAGTGCAGCCATGGAGGGTGCACAATAAGCCCATCAAACTACATAGCACATGAGGGGAAGCTATACTGCAAGCACCACCACATTCAACTGTTCAAGGAGAAGGGCAATTACAGCCAGCTTGAAACTGAGCGCCAAAAGAGCAATGCAGTGGCAATGAAATTAGGTGCTTCACTGGAAATTGCAGCTGAATCATAG

Protein sequence

MGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSRQSHEVQIFIFHFNKASAKSNLFAGTRDKCAGCTKTVYPLEKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES
Homology
[Close]
BLAST of Cp4.1LG04g07610 vs. Swiss-Prot
Match: WLIM1_ARATH (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.6e-56
Identity = 110/172 (63.95%), Postives = 120/172 (69.77%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GTTQKCMACDKTVYLVDKLTADNRV+HKACFRC+HCKGTLK+   +        + H  Q
Sbjct: 5   GTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQ 64

Query: 62  IF--------IFHFNKASAK---------------SNLFAGTRDKCAGCTKTVYPLEKVT 121
            F         F       K               SN+F GTR+KC GC KTVYP+EKV+
Sbjct: 65  NFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIEKVS 124

Query: 122 VNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE 144
           VNGT YHKSCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE
Sbjct: 125 VNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

[Close]
BLAST of Cp4.1LG04g07610 vs. Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.7e-47
Identity = 93/173 (53.76%), Postives = 110/173 (63.58%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCY------------------HCKGTLKV 61
           GTTQKC  C+KTVYLVDKL A+ RV+HKACFRC+                  +C+     
Sbjct: 6   GTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQ 65

Query: 62  ITRSRQSHEVQI-----------FIFHFNKASAKSNLFAGTRDKCAGCTKTVYPLEKVTV 121
           + +   S E              F      A+  S+ F GTRDKC  C K VYP+E+V V
Sbjct: 66  LFKRTGSLEKSFDGTPKFKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVKV 125

Query: 122 NGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETE 146
           +GTAYH++CFKC HGGCTISPSNYIAHEG+LYCKHHHIQLFK+KGNYSQLE E
Sbjct: 126 DGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVE 178

[Close]
BLAST of Cp4.1LG04g07610 vs. Swiss-Prot
Match: WLI2A_ARATH (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.3e-42
Identity = 94/192 (48.96%), Postives = 113/192 (58.85%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L++   S        + H  Q
Sbjct: 5   GTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQ 64

Query: 62  IF----IFHFN----------KASAKSN--------LFAGTRDKCAGCTKTVYPLEKVTV 121
           +F     F  N          K + + N        +F+GT+DKCA CTKTVYP+EKVTV
Sbjct: 65  LFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIEKVTV 124

Query: 122 NGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAV 165
               YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L        A 
Sbjct: 125 ESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRAT 184

[Close]
BLAST of Cp4.1LG04g07610 vs. Swiss-Prot
Match: WLI2B_ARATH (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-40
Identity = 94/195 (48.21%), Postives = 115/195 (58.97%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSRQS-------HEVQ 61
           GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L++ + S          H  Q
Sbjct: 5   GTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQ 64

Query: 62  IF--IFHFNK---ASAKS----------------NLFAGTRDKCAGCTKTVYPLEKVTVN 121
           +F     FNK   + AKS                  F+GT++KCA C+KTVYP+EKVTV 
Sbjct: 65  LFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKVTVE 124

Query: 122 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL--ETERQKSNA 167
              YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L      ++S A
Sbjct: 125 SQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAA 184

[Close]
BLAST of Cp4.1LG04g07610 vs. Swiss-Prot
Match: PLI2B_ARATH (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-37
Identity = 75/165 (45.45%), Postives = 104/165 (63.03%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GT  KC  CDKTVY+VD L+ +   +HK+CFRC HCKGTL++   S        ++H  Q
Sbjct: 5   GTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQ 64

Query: 62  IF--IFHFNK---------------ASAKSNLFAGTRDKCAGCTKTVYPLEKVTVNGTAY 121
           +F    +F+K                S  S++F GT+DKCA C KTVYPLEK+ + G  +
Sbjct: 65  LFKESGNFSKNFQPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQMEGECF 124

Query: 122 HKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL 143
           HK+CF+C+HGGCT++ S+Y + +  LYC+HH  QLF EKGNY+ +
Sbjct: 125 HKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHV 169

[Close]
BLAST of Cp4.1LG04g07610 vs. TrEMBL
Match: A0A0D2NHB4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G230900 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.0e-59
Identity = 121/190 (63.68%), Postives = 137/190 (72.11%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GT QKCMACDKTVYLVDKLTADNRVFHKACFRC+HCKGTLK+   +        + H  Q
Sbjct: 6   GTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHYDQ 65

Query: 62  IF--------IFHFNKASAKS----------NLFAGTRDKCAGCTKTVYPLEKVTVNGTA 121
           +F         F      AK           NLF GT++KC GC KTVYP+EKVTV+GT+
Sbjct: 66  LFKRTGSLDKSFEGTPKIAKPEKHIENEKVVNLFGGTKEKCVGCNKTVYPIEKVTVDGTS 125

Query: 122 YHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKL 167
           YH+ CFKCSHGGCTISPSNYIAHEGKLYCKHHH+QLFKEKGNYSQLE +RQ+   +  KL
Sbjct: 126 YHRGCFKCSHGGCTISPSNYIAHEGKLYCKHHHVQLFKEKGNYSQLEGDRQE-EPITEKL 185

[Close]
BLAST of Cp4.1LG04g07610 vs. TrEMBL
Match: A0SVL3_POPCN (LIM domain protein GLIM1b OS=Populus canescens GN=GLIM1b PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.2e-58
Identity = 120/194 (61.86%), Postives = 138/194 (71.13%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTL--------KVITRSRQSHEV 61
           GT QKCMACDKTVYLVDKLTADNR++HKACFRC+HC+GTL        + +   R  ++ 
Sbjct: 6   GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCRGTLKLSNYSSFEGVLYCRPHYD- 65

Query: 62  QIFI---------------------FHFNKASAKSNLFAGTRDKCAGCTKTVYPLEKVTV 121
           Q+F                           AS  SNLFAGTR+KC GC KTVYP+EKVTV
Sbjct: 66  QLFKRTGSLDKSFEGTPKIAKPEKPVDNENASKVSNLFAGTREKCVGCNKTVYPIEKVTV 125

Query: 122 NGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAV 167
           NGT YH+ CFKC+HGGCT+SPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE ER+K N V
Sbjct: 126 NGTPYHRRCFKCTHGGCTVSPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENEREK-NPV 185

[Close]
BLAST of Cp4.1LG04g07610 vs. TrEMBL
Match: A0A0D2RRV8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G230900 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.7e-57
Identity = 119/194 (61.34%), Postives = 138/194 (71.13%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTL--------KVITRSRQSHEV 61
           GT QKCMACDKTVYLVDKLTADNRVFHKACFRC+HCKGTL        + +   R  ++ 
Sbjct: 6   GTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHYD- 65

Query: 62  QIFIF-------------------HFNKASAKS--NLFAGTRDKCAGCTKTVYPLEKVTV 121
           Q+F                     H    +A+   NLF GT++KC GC KTVYP+EKVTV
Sbjct: 66  QLFKRTGSLDKSFEGTPKIAKPEKHIENENAQKVVNLFGGTKEKCVGCNKTVYPIEKVTV 125

Query: 122 NGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAV 167
           +GT+YH+ CFKCSHGGCTISPSNYIAHEGKLYCKHHH+QLFKEKGNYSQLE +RQ+   +
Sbjct: 126 DGTSYHRGCFKCSHGGCTISPSNYIAHEGKLYCKHHHVQLFKEKGNYSQLEGDRQE-EPI 185

[Close]
BLAST of Cp4.1LG04g07610 vs. TrEMBL
Match: Q9ZTN6_PETHY (PGPS/D1 OS=Petunia hybrida GN=PGPS/D1 PE=2 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-57
Identity = 117/195 (60.00%), Postives = 137/195 (70.26%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GTTQKC ACDKTVYLVD+L ADNRV+HKACFRCYHCK TLK+   +        + H  Q
Sbjct: 5   GTTQKCSACDKTVYLVDRLAADNRVYHKACFRCYHCKSTLKLSNFNSFEGVIYCRHHFDQ 64

Query: 62  IF----------------------IFHFNKASAK-SNLFAGTRDKCAGCTKTVYPLEKVT 121
           +F                      + + N +  K S+LF GTRDKC GC+KTVYP+EKV+
Sbjct: 65  LFKRTGSLDKSFEGTPKFTKPEKPVDNENGSGNKVSSLFGGTRDKCVGCSKTVYPIEKVS 124

Query: 122 VNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNA 167
           VNG AYHK+CFKC+HGGCTISPSNYIAHEG+LYCKHHHIQLFKEKGNYSQLE+E +  +A
Sbjct: 125 VNGAAYHKACFKCTHGGCTISPSNYIAHEGRLYCKHHHIQLFKEKGNYSQLESENEPESA 184

[Close]
BLAST of Cp4.1LG04g07610 vs. TrEMBL
Match: T1RK44_GOSHI (Lim protein 6 OS=Gossypium hirsutum GN=LIM6 PE=2 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-57
Identity = 118/194 (60.82%), Postives = 138/194 (71.13%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTL--------KVITRSRQSHEV 61
           GT QKCMACDKTVYLVDKLTADNRVFHKACFRC+HCKGTL        + +   R  ++ 
Sbjct: 6   GTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHYD- 65

Query: 62  QIFIF-------------------HFNKASAKS--NLFAGTRDKCAGCTKTVYPLEKVTV 121
           Q+F                     H    +A+   NLF GT++KC GC KTVYP+EKVTV
Sbjct: 66  QLFKRTGSLDKSFEGTPKIAKPEKHIENENAQKVVNLFGGTKEKCVGCNKTVYPIEKVTV 125

Query: 122 NGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAV 167
           +GT+YH+ CFKCSHGGCTISPSNY+AHEGKLYCKHHH+QLFKEKGNYSQLE +RQ+   +
Sbjct: 126 DGTSYHRGCFKCSHGGCTISPSNYVAHEGKLYCKHHHVQLFKEKGNYSQLEGDRQE-EPI 185

[Close]
BLAST of Cp4.1LG04g07610 vs. TAIR10
Match: AT1G10200.1 (AT1G10200.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 220.3 bits (560), Expect = 8.8e-58
Identity = 110/172 (63.95%), Postives = 120/172 (69.77%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GTTQKCMACDKTVYLVDKLTADNRV+HKACFRC+HCKGTLK+   +        + H  Q
Sbjct: 5   GTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQ 64

Query: 62  IF--------IFHFNKASAK---------------SNLFAGTRDKCAGCTKTVYPLEKVT 121
            F         F       K               SN+F GTR+KC GC KTVYP+EKV+
Sbjct: 65  NFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIEKVS 124

Query: 122 VNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE 144
           VNGT YHKSCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE
Sbjct: 125 VNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

[Close]
BLAST of Cp4.1LG04g07610 vs. TAIR10
Match: AT2G39900.1 (AT2G39900.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 171.4 bits (433), Expect = 4.7e-43
Identity = 94/192 (48.96%), Postives = 113/192 (58.85%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L++   S        + H  Q
Sbjct: 5   GTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQ 64

Query: 62  IF----IFHFN----------KASAKSN--------LFAGTRDKCAGCTKTVYPLEKVTV 121
           +F     F  N          K + + N        +F+GT+DKCA CTKTVYP+EKVTV
Sbjct: 65  LFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIEKVTV 124

Query: 122 NGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAV 165
               YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L        A 
Sbjct: 125 ESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRAT 184

[Close]
BLAST of Cp4.1LG04g07610 vs. TAIR10
Match: AT1G01780.1 (AT1G01780.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 157.1 bits (396), Expect = 9.1e-39
Identity = 75/165 (45.45%), Postives = 104/165 (63.03%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GT  KC  CDKTVY+VD L+ +   +HK+CFRC HCKGTL++   S        ++H  Q
Sbjct: 5   GTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQ 64

Query: 62  IF--IFHFNK---------------ASAKSNLFAGTRDKCAGCTKTVYPLEKVTVNGTAY 121
           +F    +F+K                S  S++F GT+DKCA C KTVYPLEK+ + G  +
Sbjct: 65  LFKESGNFSKNFQPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQMEGECF 124

Query: 122 HKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL 143
           HK+CF+C+HGGCT++ S+Y + +  LYC+HH  QLF EKGNY+ +
Sbjct: 125 HKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHV 169

[Close]
BLAST of Cp4.1LG04g07610 vs. TAIR10
Match: AT3G61230.1 (AT3G61230.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 156.4 bits (394), Expect = 1.6e-38
Identity = 77/167 (46.11%), Postives = 102/167 (61.08%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GTT KC ACDKTVY++D +T +   +HK+CFRC HC GTL +   S        ++H  Q
Sbjct: 6   GTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTHFEQ 65

Query: 62  IFI--------FHFNKASAKSN-----------LFAGTRDKCAGCTKTVYPLEKVTVNGT 121
           +F         F     + KSN            F+GT+DKCA C KTVYPLEK+T+ G 
Sbjct: 66  LFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKMTMEGE 125

Query: 122 AYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL 143
           +YHK+CF+C+H GC ++ S+Y A +G LYCK H  QLF EKGNY+ +
Sbjct: 126 SYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHV 172

[Close]
BLAST of Cp4.1LG04g07610 vs. TAIR10
Match: AT2G45800.1 (AT2G45800.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 155.2 bits (391), Expect = 3.5e-38
Identity = 80/184 (43.48%), Postives = 104/184 (56.52%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSRQS-------HEVQ 61
           GT  KC ACDKTVY++D LT +   +HK+CFRC HCKGTL +   S          H  Q
Sbjct: 5   GTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPHFEQ 64

Query: 62  IFIF------------------HFNKASAK-SNLFAGTRDKCAGCTKTVYPLEKVTVNGT 121
           +F                    H  +  +K S+ F+GT+DKCA C KTVYPLEKVT+ G 
Sbjct: 65  LFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVTMEGE 124

Query: 122 AYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMK 160
           +YHK+CF+C+H GC ++ S+Y +  G LYCK H  QLF EKG+Y+ +          A  
Sbjct: 125 SYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANHRRSASS 184

[Close]
BLAST of Cp4.1LG04g07610 vs. NCBI nr
Match: gi|823160570|ref|XP_012480131.1| (PREDICTED: LIM domain-containing protein WLIM1-like isoform X2 [Gossypium raimondii])

HSP 1 Score: 236.1 bits (601), Expect = 4.4e-59
Identity = 121/190 (63.68%), Postives = 137/190 (72.11%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GT QKCMACDKTVYLVDKLTADNRVFHKACFRC+HCKGTLK+   +        + H  Q
Sbjct: 6   GTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHYDQ 65

Query: 62  IF--------IFHFNKASAKS----------NLFAGTRDKCAGCTKTVYPLEKVTVNGTA 121
           +F         F      AK           NLF GT++KC GC KTVYP+EKVTV+GT+
Sbjct: 66  LFKRTGSLDKSFEGTPKIAKPEKHIENEKVVNLFGGTKEKCVGCNKTVYPIEKVTVDGTS 125

Query: 122 YHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKL 167
           YH+ CFKCSHGGCTISPSNYIAHEGKLYCKHHH+QLFKEKGNYSQLE +RQ+   +  KL
Sbjct: 126 YHRGCFKCSHGGCTISPSNYIAHEGKLYCKHHHVQLFKEKGNYSQLEGDRQE-EPITEKL 185

[Close]
BLAST of Cp4.1LG04g07610 vs. NCBI nr
Match: gi|117950163|gb|ABK58465.1| (LIM domain protein GLIM1b [Populus tremula x Populus alba])

HSP 1 Score: 234.2 bits (596), Expect = 1.7e-58
Identity = 120/194 (61.86%), Postives = 138/194 (71.13%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTL--------KVITRSRQSHEV 61
           GT QKCMACDKTVYLVDKLTADNR++HKACFRC+HC+GTL        + +   R  ++ 
Sbjct: 6   GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCRGTLKLSNYSSFEGVLYCRPHYD- 65

Query: 62  QIFI---------------------FHFNKASAKSNLFAGTRDKCAGCTKTVYPLEKVTV 121
           Q+F                           AS  SNLFAGTR+KC GC KTVYP+EKVTV
Sbjct: 66  QLFKRTGSLDKSFEGTPKIAKPEKPVDNENASKVSNLFAGTREKCVGCNKTVYPIEKVTV 125

Query: 122 NGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAV 167
           NGT YH+ CFKC+HGGCT+SPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE ER+K N V
Sbjct: 126 NGTPYHRRCFKCTHGGCTVSPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENEREK-NPV 185

[Close]
BLAST of Cp4.1LG04g07610 vs. NCBI nr
Match: gi|823160568|ref|XP_012480128.1| (PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Gossypium raimondii])

HSP 1 Score: 230.3 bits (586), Expect = 2.4e-57
Identity = 119/194 (61.34%), Postives = 138/194 (71.13%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTL--------KVITRSRQSHEV 61
           GT QKCMACDKTVYLVDKLTADNRVFHKACFRC+HCKGTL        + +   R  ++ 
Sbjct: 6   GTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHYD- 65

Query: 62  QIFIF-------------------HFNKASAKS--NLFAGTRDKCAGCTKTVYPLEKVTV 121
           Q+F                     H    +A+   NLF GT++KC GC KTVYP+EKVTV
Sbjct: 66  QLFKRTGSLDKSFEGTPKIAKPEKHIENENAQKVVNLFGGTKEKCVGCNKTVYPIEKVTV 125

Query: 122 NGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAV 167
           +GT+YH+ CFKCSHGGCTISPSNYIAHEGKLYCKHHH+QLFKEKGNYSQLE +RQ+   +
Sbjct: 126 DGTSYHRGCFKCSHGGCTISPSNYIAHEGKLYCKHHHVQLFKEKGNYSQLEGDRQE-EPI 185

[Close]
BLAST of Cp4.1LG04g07610 vs. NCBI nr
Match: gi|4105772|gb|AAD02543.1| (PGPS/D1 [Petunia x hybrida])

HSP 1 Score: 229.9 bits (585), Expect = 3.1e-57
Identity = 117/195 (60.00%), Postives = 137/195 (70.26%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GTTQKC ACDKTVYLVD+L ADNRV+HKACFRCYHCK TLK+   +        + H  Q
Sbjct: 5   GTTQKCSACDKTVYLVDRLAADNRVYHKACFRCYHCKSTLKLSNFNSFEGVIYCRHHFDQ 64

Query: 62  IF----------------------IFHFNKASAK-SNLFAGTRDKCAGCTKTVYPLEKVT 121
           +F                      + + N +  K S+LF GTRDKC GC+KTVYP+EKV+
Sbjct: 65  LFKRTGSLDKSFEGTPKFTKPEKPVDNENGSGNKVSSLFGGTRDKCVGCSKTVYPIEKVS 124

Query: 122 VNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNA 167
           VNG AYHK+CFKC+HGGCTISPSNYIAHEG+LYCKHHHIQLFKEKGNYSQLE+E +  +A
Sbjct: 125 VNGAAYHKACFKCTHGGCTISPSNYIAHEGRLYCKHHHIQLFKEKGNYSQLESENEPESA 184

[Close]
BLAST of Cp4.1LG04g07610 vs. NCBI nr
Match: gi|480355463|gb|AGJ83946.1| (lim protein 6 [Gossypium hirsutum])

HSP 1 Score: 229.9 bits (585), Expect = 3.1e-57
Identity = 118/194 (60.82%), Postives = 138/194 (71.13%), Query Frame = 1 

Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTL--------KVITRSRQSHEV 61
           GT QKCMACDKTVYLVDKLTADNRVFHKACFRC+HCKGTL        + +   R  ++ 
Sbjct: 6   GTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHYD- 65

Query: 62  QIFIF-------------------HFNKASAKS--NLFAGTRDKCAGCTKTVYPLEKVTV 121
           Q+F                     H    +A+   NLF GT++KC GC KTVYP+EKVTV
Sbjct: 66  QLFKRTGSLDKSFEGTPKIAKPEKHIENENAQKVVNLFGGTKEKCVGCNKTVYPIEKVTV 125

Query: 122 NGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAV 167
           +GT+YH+ CFKCSHGGCTISPSNY+AHEGKLYCKHHH+QLFKEKGNYSQLE +RQ+   +
Sbjct: 126 DGTSYHRGCFKCSHGGCTISPSNYVAHEGKLYCKHHHVQLFKEKGNYSQLEGDRQE-EPI 185

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g07610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
WLIM1_ARATH1.6e-5663.95LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana GN=WLIM1 PE=1 SV=1[more]
SF3_HELAN1.7e-4753.76Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1[more]
WLI2A_ARATH8.3e-4248.96LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana GN=WLIN2A PE=1 SV=1[more]
WLI2B_ARATH1.2e-4048.21LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1[more]
PLI2B_ARATH1.6e-3745.45LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana GN=PLIM2B PE=1 SV=1[more]
BLAST of Cp4.1LG04g07610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2NHB4_GOSRA3.0e-5963.68Uncharacterized protein OS=Gossypium raimondii GN=B456_005G230900 PE=4 SV=1[more]
A0SVL3_POPCN1.2e-5861.86LIM domain protein GLIM1b OS=Populus canescens GN=GLIM1b PE=2 SV=1[more]
A0A0D2RRV8_GOSRA1.7e-5761.34Uncharacterized protein OS=Gossypium raimondii GN=B456_005G230900 PE=4 SV=1[more]
Q9ZTN6_PETHY2.2e-5760.00PGPS/D1 OS=Petunia hybrida GN=PGPS/D1 PE=2 SV=1[more]
T1RK44_GOSHI2.2e-5760.82Lim protein 6 OS=Gossypium hirsutum GN=LIM6 PE=2 SV=1[more]
BLAST of Cp4.1LG04g07610 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G10200.18.8e-5863.95 GATA type zinc finger transcription factor family protein[more]
AT2G39900.14.7e-4348.96 GATA type zinc finger transcription factor family protein[more]
AT1G01780.19.1e-3945.45 GATA type zinc finger transcription factor family protein[more]
AT3G61230.11.6e-3846.11 GATA type zinc finger transcription factor family protein[more]
AT2G45800.13.5e-3843.48 GATA type zinc finger transcription factor family protein[more]
BLAST of Cp4.1LG04g07610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|823160570|ref|XP_012480131.1|4.4e-5963.68PREDICTED: LIM domain-containing protein WLIM1-like isoform X2 [Gossypium raimon... [more]
gi|117950163|gb|ABK58465.1|1.7e-5861.86LIM domain protein GLIM1b [Populus tremula x Populus alba][more]
gi|823160568|ref|XP_012480128.1|2.4e-5761.34PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Gossypium raimon... [more]
gi|4105772|gb|AAD02543.1|3.1e-5760.00PGPS/D1 [Petunia x hybrida][more]
gi|480355463|gb|AGJ83946.1|3.1e-5760.82lim protein 6 [Gossypium hirsutum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0051017 actin filament bundle assembly
biological_process GO:0016310 phosphorylation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005886 plasma membrane
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0051015 actin filament binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g07610.1Cp4.1LG04g07610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeGENE3DG3DSA:2.10.110.10coord: 70..139
score: 3.4E-25coord: 2..42
score: 7.7
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 7..43
score: 6.8E-7coord: 77..132
score: 7.2
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 76..128
score: 3.2E-15coord: 6..62
score: 0.
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 7..41
scor
IPR001781Zinc finger, LIM-typePROFILEPS50023LIM_DOMAIN_2coord: 75..135
score: 12.939coord: 5..66
score: 9
NoneNo IPR availablePANTHERPTHR24206FAMILY NOT NAMEDcoord: 2..154
score: 1.3
NoneNo IPR availablePANTHERPTHR24206:SF29SUBFAMILY NOT NAMEDcoord: 2..154
score: 1.3
NoneNo IPR availableunknownSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 69..102
score: 1.74E-9coord: 103..142
score: 9.45E-15coord: 2..32
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g07610CmaCh11G016970Cucurbita maxima (Rimu)cmacpeB154
Cp4.1LG04g07610CmoCh11G014220Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g07610Cla001608Watermelon (97103) v1cpewmB665
Cp4.1LG04g07610MELO3C018524Melon (DHL92) v3.5.1cpemeB604
Cp4.1LG04g07610ClCG02G007060Watermelon (Charleston Gray)cpewcgB590
Cp4.1LG04g07610Lsi03G005830Bottle gourd (USVL1VR-Ls)cpelsiB543
Cp4.1LG04g07610MELO3C016823.2Melon (DHL92) v3.6.1cpemedB771
Cp4.1LG04g07610MELO3C018524.2Melon (DHL92) v3.6.1cpemedB715
Cp4.1LG04g07610CsaV3_4G035090Cucumber (Chinese Long) v3cpecucB0847
Cp4.1LG04g07610CsaV3_7G007780Cucumber (Chinese Long) v3cpecucB0868
Cp4.1LG04g07610Bhi09G002655Wax gourdcpewgoB0879
Cp4.1LG04g07610Bhi05G000881Wax gourdcpewgoB0856
Cp4.1LG04g07610Bhi04G000400Wax gourdcpewgoB0860
Cp4.1LG04g07610CsGy7G006330Cucumber (Gy14) v2cgybcpeB969
Cp4.1LG04g07610CsGy2G018380Cucumber (Gy14) v2cgybcpeB237
Cp4.1LG04g07610Carg11889Silver-seed gourdcarcpeB0266
Cp4.1LG04g07610Carg16325Silver-seed gourdcarcpeB0639
Cp4.1LG04g07610Carg23040Silver-seed gourdcarcpeB1033
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g07610Cp4.1LG11g01190Cucurbita pepo (Zucchini)cpecpeB133
Cp4.1LG04g07610Cp4.1LG15g04410Cucurbita pepo (Zucchini)cpecpeB269
Cp4.1LG04g07610Cp4.1LG06g02100Cucurbita pepo (Zucchini)cpecpeB497
Cp4.1LG04g07610Cp4.1LG07g04900Cucurbita pepo (Zucchini)cpecpeB500
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g07610Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG04g07610Cucumber (Gy14) v1cgycpeB0602
Cp4.1LG04g07610Cucurbita maxima (Rimu)cmacpeB539
Cp4.1LG04g07610Cucurbita maxima (Rimu)cmacpeB749
Cp4.1LG04g07610Cucurbita moschata (Rifu)cmocpeB321
Cp4.1LG04g07610Cucurbita moschata (Rifu)cmocpeB494
Cp4.1LG04g07610Cucurbita moschata (Rifu)cmocpeB703
Cp4.1LG04g07610Wild cucumber (PI 183967)cpecpiB697
Cp4.1LG04g07610Cucumber (Chinese Long) v2cpecuB695
Cp4.1LG04g07610Bottle gourd (USVL1VR-Ls)cpelsiB548
Cp4.1LG04g07610Silver-seed gourdcarcpeB0409
Cp4.1LG04g07610Silver-seed gourdcarcpeB0529