Cla001608 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001608
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	LIM domain protein (AHRD V1 **-- Q306K1_BRANA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type
Location	Chr2 : 7996672 .. 7998106 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGCTTTTCAGGAACCACACAAAAGTGCATGGCTTGTGACAAGACAGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGGATTTTCCATAAGGCTTGTTTCCGATGCTACCATTGTAGGGGCACTCTTAAGGTATAAATAATATCCATATTTTATCCCTCTCTTCAAAAATAATAATAATAATAATCTTTTTGCTTTTTTTGTTTTTATGTTTGGAATTGGAATTGATTTCAGGGCGAGTATCACGAACATGCATTTGATGATGCCTGTTTGATGATAACAATCTCGTTTACAATTTCTTATTCTAGTAATAACTTCGAAACATGAAACCTGAAACTGTTAAGACGTTTTCAAAATAATACTTTGTTAAATAATTATTATTAGACCAAACTTGATTAATTTAACCGTCTATTTTTTGTATTTTCAACTAAGATAATACTAATTATTATTATTTATTTATTCTTTTTTTTTTTTTTGGTTTTGCAGCTTAGCAACTATTGTTCCTTTGAGGGAGTGCTTTACTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAGAGTTTTGAAGGCAATTATTATTATTATTATTATTATTATTATTTACTATGTTAATTACAAATCACAACTCTATAATTTTCCTATTTTGCAAAACCATACCCTCCTATTTTTCAAAATTATTCAAACACCCACATTGTCCAAAATCCATACCCTTAAATTTTACAAGGAGTACACTTGCAAAATAGGACATGATTTACAAAATTCATTAAAAAAAAAAAATTCCCAAAATAATTCTAAAATTGAATATTTTCTTTTCTCCAGGAACTCCAAAAGTCATGAAAGCAGAAAAGCCCACCGAAAATGAGGTATTACCCATTTGAAAAACCAAATTATTATCCAACAGGGAGCTCAATTTCATTTTTTTTTTTTTTGACTATTTACTAATGATTTATATTGGAATTTGCAATTGAATAGAATGTAAAGTCAGTCTCCAACATGTTTGCTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTACTAATTGCAATCAAAATATGAAAAAAAAAAAAAAAAAAACTAATTAATCATCTATTAAAATTTTTGTAATTACTTCGTTTTGGAGCATAATAATAAAGTTTATACTATCGATTCTAAGGTTACGGTGAACGGGACGCCATACCACAAAAGCTGCTTCAAATGTAGCCATGGAGGATGCACAATAAGCCCATCAAATTACATAGCACATGAGGGAAAACTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAGGGAAATTACAGCCAACTTGAAACTGAGCGACAAAAGAACAATTCATCAGTGGCAATGAAATTAACCACTCCAATGGAAATTGCAGCTGAATCATAG

mRNA sequence

ATGGCTAGCTTTTCAGGAACCACACAAAAGTGCATGGCTTGTGACAAGACAGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGGATTTTCCATAAGGCTTGTTTCCGATGCTACCATTGTAGGGGCACTCTTAAGCTTAGCAACTATTGTTCCTTTGAGGGAGTGCTTTACTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAGAGAACTCCAAAAGTCATGAAAGCAGAAAAGCCCACCGAAAATGAGAATGTAAAGTCAGTCTCCAACATGTTTGCTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTTACGGTGAACGGGACGCCATACCACAAAAGCTGCTTCAAATGTAGCCATGGAGGATGCACAATAAGCCCATCAAATTACATAGCACATGAGGGAAAACTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAGGGAAATTACAGCCAACTTGAAACTGAGCGACAAAAGAACAATTCATCAGTGGCAATGAAATTAACCACTCCAATGGAAATTGCAGCTGAATCATAG

Coding sequence (CDS)

ATGGCTAGCTTTTCAGGAACCACACAAAAGTGCATGGCTTGTGACAAGACAGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGGATTTTCCATAAGGCTTGTTTCCGATGCTACCATTGTAGGGGCACTCTTAAGCTTAGCAACTATTGTTCCTTTGAGGGAGTGCTTTACTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAGAGAACTCCAAAAGTCATGAAAGCAGAAAAGCCCACCGAAAATGAGAATGTAAAGTCAGTCTCCAACATGTTTGCTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTTACGGTGAACGGGACGCCATACCACAAAAGCTGCTTCAAATGTAGCCATGGAGGATGCACAATAAGCCCATCAAATTACATAGCACATGAGGGAAAACTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAGGGAAATTACAGCCAACTTGAAACTGAGCGACAAAAGAACAATTCATCAGTGGCAATGAAATTAACCACTCCAATGGAAATTGCAGCTGAATCATAG

Protein sequence

MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKRTPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIEKVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNNSSVAMKLTTPMEIAAES

Homology

[Close]

BLAST of Cla001608 vs. Swiss-Prot
Match: WLIM1_ARATH (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.4e-80
Identity = 139/175 (79.43%), Postives = 151/175 (86.29%), Query Frame = 1


Query: 3   SFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCRPH 62
           +F+GTTQKCMACDKTVYLVDKLTADNR++HKACFRC+HC+GTLKLSNY SFEGVLYCRPH
Sbjct: 2   AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61

Query: 63  YDQLFKRTGSLDKR---TPKVMKAEKPTENENVKS--VSNMFAGTRDKCSGCTKTVYPIE 122
           +DQ FKRTGSL+K    TPK+ K ++P E E      VSNMF GTR+KC GC KTVYPIE
Sbjct: 62  FDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIE 121

Query: 123 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE 173
           KV+VNGT YHKSCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE
Sbjct: 122 KVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

[Close]

BLAST of Cla001608 vs. Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 4.5e-71
Identity = 123/179 (68.72%), Postives = 144/179 (80.45%), Query Frame = 1


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           M SF+GTTQKC  C+KTVYLVDKL A+ R++HKACFRC+HC  TLKLSN+ SF+GV+YCR
Sbjct: 1   MKSFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKP--TENENVKSVSNMFAGTRDKCSGCTKTVYP 120
            H+DQLFKRTGSL+K    TPK  K E+    E ++   +S+ F GTRDKC+ C K VYP
Sbjct: 61  HHFDQLFKRTGSLEKSFDGTPK-FKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYP 120

Query: 121 IEKVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETE 175
           IE+V V+GT YH++CFKC HGGCTISPSNYIAHEG+LYCKHHHIQLFK+KGNYSQLE E
Sbjct: 121 IERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVE 178

HSP 2 Score: 82.4 bits (202), Expect = 6.0e-15
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 1


Query: 4   FSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCRPHY 63
           F GT  KC AC K VY ++++  D   +H+ACF+C H   T+  SNY + EG LYC+ H+
Sbjct: 103 FEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHH 162

Query: 64  DQLFKRTGS---LDKRTPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKT 113
            QLFK+ G+   L+        AE  T+N   ++     A T++  +  T+T
Sbjct: 163 IQLFKKKGNYSQLEVEETVAAPAESETQNTETQNAETQNADTQNADTQNTET 214

[Close]

BLAST of Cla001608 vs. Swiss-Prot
Match: WLI2A_ARATH (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.1e-60
Identity = 108/173 (62.43%), Postives = 128/173 (73.99%), Query Frame = 1


Query: 3   SFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCRPH 62
           SF+GT QKC AC+KTVY V+ L+AD   +HKACF+C HC+  L+LSNY S EGV+YCRPH
Sbjct: 2   SFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPH 61

Query: 63  YDQLFKRTGSLDK--RTPKVMKAEKPTE--NENVKSVSNMFAGTRDKCSGCTKTVYPIEK 122
           ++QLFK +GS  K  ++P     +KPT   N     ++ MF+GT+DKC+ CTKTVYPIEK
Sbjct: 62  FEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIEK 121

Query: 123 VTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL 172
           VTV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L
Sbjct: 122 VTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

HSP 2 Score: 89.4 bits (220), Expect = 4.9e-17
Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 1


Query: 99  FAGTRDKCSGCTKTVYPIEKVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHH 158
           F GT+ KC  C KTVYP+E ++ +G  YHK+CFKCSH    +  SNY + EG +YC+ H 
Sbjct: 3   FTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHF 62

Query: 159 IQLFKEKGNYSQLETERQKNNSSVAMKLT 188
            QLFKE G++S       KN  S A  LT
Sbjct: 63  EQLFKESGSFS-------KNFQSPAKPLT 84

[Close]

BLAST of Cla001608 vs. Swiss-Prot
Match: WLI2B_ARATH (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.2e-57
Identity = 106/198 (53.54%), Postives = 137/198 (69.19%), Query Frame = 1


Query: 3   SFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCRPH 62
           SF+GT QKC AC+KTVY V+ L+AD   +HK+CF+C HC+  L+LS+Y S EGVLYC+PH
Sbjct: 2   SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61

Query: 63  YDQLFKRTGSLDKRTPKVMKAEKPTENENVKS---VSNMFAGTRDKCSGCTKTVYPIEKV 122
           ++QLFK +GS +K      K+   +  E  ++   V+  F+GT++KC+ C+KTVYPIEKV
Sbjct: 62  FEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKV 121

Query: 123 TVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL-ETERQKN 182
           TV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L ++   K 
Sbjct: 122 TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKR 181

Query: 183 NSSVAMKLTTPMEIAAES 197
           +++ A+    P     ES
Sbjct: 182 SAAAAVAAGVPAASVPES 199

[Close]

BLAST of Cla001608 vs. Swiss-Prot
Match: PLI2C_ARATH (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana GN=PLIM2C PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 7.2e-53
Identity = 94/193 (48.70%), Postives = 128/193 (66.32%), Query Frame = 1


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+F+GTT KC ACDKTVY++D +T +   +HK+CFRC HC GTL + NY S +GVLYC+
Sbjct: 1   MAAFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCK 60

Query: 61  PHYDQLFKRTGSLDKRTPKVMKAEKPTENENVKS-VSNMFAGTRDKCSGCTKTVYPIEKV 120
            H++QLFK +G+  K      K EK  +     + +S+ F+GT+DKC+ C KTVYP+EK+
Sbjct: 61  THFEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKM 120

Query: 121 TVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQ-LETERQKN 180
           T+ G  YHK+CF+C+H GC ++ S+Y A +G LYCK H  QLF EKGNY+  L+      
Sbjct: 121 TMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHR 180

Query: 181 NSSVAMKLTTPME 192
            S+     T P E
Sbjct: 181 RSTAEEDKTEPKE 193

[Close]

BLAST of Cla001608 vs. TrEMBL
Match: A0A0A0K2E5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071340 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.0e-102
Identity = 179/201 (89.05%), Postives = 189/201 (94.03%), Query Frame = 1


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MASFSGTTQKCMAC+KTVYLVDKLTADNR+FHKACFRCYHC+GTLKLSNYCSFEGVLYCR
Sbjct: 1   MASFSGTTQKCMACEKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPKVM++EKP+ENEN KSVSNMF GTRDKCSGCTKTVY IE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKVMRSEKPSENENAKSVSNMFGGTRDKCSGCTKTVYLIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNG  YHKSCFKCSHGGCTISPS+YIAHEGKLYCKHHHIQLF EKGNYSQLETERQK
Sbjct: 121 KVTVNGNAYHKSCFKCSHGGCTISPSSYIAHEGKLYCKHHHIQLFMEKGNYSQLETERQK 180

Query: 181 NNSSV--AMKLTTPMEIAAES 197
           NNS++  A+KLTTPMEIAAES
Sbjct: 181 NNSAIAAAIKLTTPMEIAAES 201

[Close]

BLAST of Cla001608 vs. TrEMBL
Match: A0SVL2_POPCN (LIM domain protein GLIM1a OS=Populus canescens GN=GLIM1a PE=2 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 3.4e-94
Identity = 164/199 (82.41%), Postives = 177/199 (88.94%), Query Frame = 1


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+FSGT QKCMACDKTVYLVDKLTADNR+FHKACFRC+HCRGTLKLSNYCSFEGVLYCR
Sbjct: 1   MAAFSGTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCDKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N     +   T +EIAAES
Sbjct: 181 N----PVVSITAVEIAAES 195

[Close]

BLAST of Cla001608 vs. TrEMBL
Match: A9PB06_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09040g PE=2 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 7.7e-94
Identity = 163/199 (81.91%), Postives = 177/199 (88.94%), Query Frame = 1


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+F+GT QKCMACDKTVYLVDKLTADNR+FHKACFRC+HCRGTLKLSNYCSFEGVLYCR
Sbjct: 1   MAAFAGTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCDKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N     +   T +EIAAES
Sbjct: 181 N----PVVSITAVEIAAES 195

[Close]

BLAST of Cla001608 vs. TrEMBL
Match: A9PG33_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 2.9e-93
Identity = 162/199 (81.41%), Postives = 177/199 (88.94%), Query Frame = 1


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+F+GT QKCMACDKTVYLVDKLTADNR+FHKACFRC+HCRGTLKLSNYCSFEGVLYCR
Sbjct: 1   MAAFAGTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCDKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKL+CKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLHCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N     +   T +EIAAES
Sbjct: 181 N----PVVSITAVEIAAES 195

[Close]

BLAST of Cla001608 vs. TrEMBL
Match: B9GIA5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30020g PE=4 SV=2)

HSP 1 Score: 349.4 bits (895), Expect = 2.9e-93
Identity = 163/199 (81.91%), Postives = 178/199 (89.45%), Query Frame = 1


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+F+GT QKCMACDKTVYLVDKLTADNRI+HKACFRC+HCRGTLKLSNY SFEGVLYCR
Sbjct: 1   MAAFAGTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCRGTLKLSNYSSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCNKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N  +V +   T +EIAAES
Sbjct: 181 NPVTVNI---TAVEIAAES 196

[Close]

BLAST of Cla001608 vs. NCBI nr
Match: gi|449438317|ref|XP_004136935.1| (PREDICTED: LIM domain-containing protein WLIM1-like [Cucumis sativus])

HSP 1 Score: 379.8 bits (974), Expect = 2.9e-102
Identity = 179/201 (89.05%), Postives = 189/201 (94.03%), Query Frame = 1


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MASFSGTTQKCMAC+KTVYLVDKLTADNR+FHKACFRCYHC+GTLKLSNYCSFEGVLYCR
Sbjct: 1   MASFSGTTQKCMACEKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPKVM++EKP+ENEN KSVSNMF GTRDKCSGCTKTVY IE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKVMRSEKPSENENAKSVSNMFGGTRDKCSGCTKTVYLIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNG  YHKSCFKCSHGGCTISPS+YIAHEGKLYCKHHHIQLF EKGNYSQLETERQK
Sbjct: 121 KVTVNGNAYHKSCFKCSHGGCTISPSSYIAHEGKLYCKHHHIQLFMEKGNYSQLETERQK 180

Query: 181 NNSSV--AMKLTTPMEIAAES 197
           NNS++  A+KLTTPMEIAAES
Sbjct: 181 NNSAIAAAIKLTTPMEIAAES 201

[Close]

BLAST of Cla001608 vs. NCBI nr
Match: gi|117950161|gb|ABK58464.1| (LIM domain protein GLIM1a [Populus tremula x Populus alba])

HSP 1 Score: 352.4 bits (903), Expect = 4.9e-94
Identity = 164/199 (82.41%), Postives = 177/199 (88.94%), Query Frame = 1


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+FSGT QKCMACDKTVYLVDKLTADNR+FHKACFRC+HCRGTLKLSNYCSFEGVLYCR
Sbjct: 1   MAAFSGTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCDKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N     +   T +EIAAES
Sbjct: 181 N----PVVSITAVEIAAES 195

[Close]

BLAST of Cla001608 vs. NCBI nr
Match: gi|566187089|ref|XP_002313186.2| (hypothetical protein POPTR_0009s09040g [Populus trichocarpa])

HSP 1 Score: 351.3 bits (900), Expect = 1.1e-93
Identity = 163/199 (81.91%), Postives = 177/199 (88.94%), Query Frame = 1


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+F+GT QKCMACDKTVYLVDKLTADNR+FHKACFRC+HCRGTLKLSNYCSFEGVLYCR
Sbjct: 1   MAAFAGTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCDKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N     +   T +EIAAES
Sbjct: 181 N----PVVSITAVEIAAES 195

[Close]

BLAST of Cla001608 vs. NCBI nr
Match: gi|566151782|ref|XP_002298780.2| (hypothetical protein POPTR_0001s30020g [Populus trichocarpa])

HSP 1 Score: 349.4 bits (895), Expect = 4.2e-93
Identity = 163/199 (81.91%), Postives = 178/199 (89.45%), Query Frame = 1


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+F+GT QKCMACDKTVYLVDKLTADNRI+HKACFRC+HCRGTLKLSNY SFEGVLYCR
Sbjct: 1   MAAFAGTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCRGTLKLSNYSSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCNKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N  +V +   T +EIAAES
Sbjct: 181 NPVTVNI---TAVEIAAES 196

[Close]

BLAST of Cla001608 vs. NCBI nr
Match: gi|118487010|gb|ABK95336.1| (unknown [Populus trichocarpa])

HSP 1 Score: 349.4 bits (895), Expect = 4.2e-93
Identity = 162/199 (81.41%), Postives = 177/199 (88.94%), Query Frame = 1


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+F+GT QKCMACDKTVYLVDKLTADNR+FHKACFRC+HCRGTLKLSNYCSFEGVLYCR
Sbjct: 1   MAAFAGTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCDKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKL+CKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLHCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N     +   T +EIAAES
Sbjct: 181 N----PVVSITAVEIAAES 195

The following BLAST results are available for this feature:

BLAST of Cla001608 vs. Swiss-Prot


Match Name	E-value	Identity	Description
WLIM1_ARATH	1.4e-80	79.43	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana GN=WLIM1 PE=1 SV=1	[more]
SF3_HELAN	4.5e-71	68.72	Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1	[more]
WLI2A_ARATH	6.1e-60	62.43	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana GN=WLIN2A PE=1 SV=1	[more]
WLI2B_ARATH	2.2e-57	53.54	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1	[more]
PLI2C_ARATH	7.2e-53	48.70	LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana GN=PLIM2C PE=1 SV=1	[more]

BLAST of Cla001608 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2E5_CUCSA	2.0e-102	89.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071340 PE=4 SV=1	[more]
A0SVL2_POPCN	3.4e-94	82.41	LIM domain protein GLIM1a OS=Populus canescens GN=GLIM1a PE=2 SV=1	[more]
A9PB06_POPTR	7.7e-94	81.91	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09040g PE=2 SV=1	[more]
A9PG33_POPTR	2.9e-93	81.41	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
B9GIA5_POPTR	2.9e-93	81.91	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30020g PE=4 SV=2	[more]

BLAST of Cla001608 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438317\|ref\|XP_004136935.1\|	2.9e-102	89.05	PREDICTED: LIM domain-containing protein WLIM1-like [Cucumis sativus]	[more]
gi\|117950161\|gb\|ABK58464.1\|	4.9e-94	82.41	LIM domain protein GLIM1a [Populus tremula x Populus alba]	[more]
gi\|566187089\|ref\|XP_002313186.2\|	1.1e-93	81.91	hypothetical protein POPTR_0009s09040g [Populus trichocarpa]	[more]
gi\|566151782\|ref\|XP_002298780.2\|	4.2e-93	81.91	hypothetical protein POPTR_0001s30020g [Populus trichocarpa]	[more]
gi\|118487010\|gb\|ABK95336.1\|	4.2e-93	81.41	unknown [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001781	Znf_LIM

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001608	Cla001608.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	GENE3D	G3DSA:2.10.110.10		coord: 98..168 score: 9.7E-25coord: 4..71 score: 8.0
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 106..161 score: 6.0E-13coord: 11..65 score: 1.
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 105..157 score: 5.7E-15coord: 10..62 score: 5.3
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 11..45 scor
IPR001781	Zinc finger, LIM-type	PROFILE	PS50023	LIM_DOMAIN_2	coord: 104..164 score: 12.702coord: 9..69 score: 13
None	No IPR available	PANTHER	PTHR24206	FAMILY NOT NAMED	coord: 1..195 score: 7.9E
None	No IPR available	PANTHER	PTHR24206:SF29	SUBFAMILY NOT NAMED	coord: 1..195 score: 7.9E
None	No IPR available	unknown	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 37..76 score: 1.22E-13coord: 4..36 score: 6.63E-10coord: 98..131 score: 2.06E-9coord: 132..171 score: 1.16

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001608	Cla97C02G033890	Watermelon (97103) v2	wmwmbB317
Cla001608	Csa7G071340	Cucumber (Chinese Long) v2	cuwmB605
Cla001608	MELO3C018524	Melon (DHL92) v3.5.1	mewmB240
Cla001608	ClCG02G007060	Watermelon (Charleston Gray)	wcgwmB198
Cla001608	CSPI07G06810	Wild cucumber (PI 183967)	cpiwmB623
Cla001608	Cucsa.219100	Cucumber (Gy14) v1	cgywmB427
Cla001608	CmaCh19G005470	Cucurbita maxima (Rimu)	cmawmB503
Cla001608	CmaCh11G016970	Cucurbita maxima (Rimu)	cmawmB127
Cla001608	CmoCh19G005610	Cucurbita moschata (Rifu)	cmowmB496
Cla001608	CmoCh11G014220	Cucurbita moschata (Rifu)	cmowmB109
Cla001608	Lsi03G005830	Bottle gourd (USVL1VR-Ls)	lsiwmB268
Cla001608	Cp4.1LG15g04410	Cucurbita pepo (Zucchini)	cpewmB268
Cla001608	Cp4.1LG04g07610	Cucurbita pepo (Zucchini)	cpewmB665
Cla001608	CsGy7G006330	Cucumber (Gy14) v2	cgybwmB567
Cla001608	MELO3C018524.2	Melon (DHL92) v3.6.1	medwmB232
Cla001608	Carg16325	Silver-seed gourd	carwmB0455
Cla001608	Carg23040	Silver-seed gourd	carwmB0733
Cla001608	CsaV3_7G007780	Cucumber (Chinese Long) v3	cucwmB635

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001608	Melon (DHL92) v3.6.1	medwmB522
Cla001608	Wax gourd	wgowmB279
Cla001608	Watermelon (97103) v1	wmwmB054
Cla001608	Cucurbita moschata (Rifu)	cmowmB721
Cla001608	Melon (DHL92) v3.5.1	mewmB537