Cla001608.1 (mRNA) Watermelon (97103) v1

NameCla001608
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionLIM domain protein (AHRD V1 **-- Q306K1_BRANA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type
LocationChr2 : 7996672 .. 7998106 (+)
Sequence length591
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGCTTTTCAGGAACCACACAAAAGTGCATGGCTTGTGACAAGACAGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGGATTTTCCATAAGGCTTGTTTCCGATGCTACCATTGTAGGGGCACTCTTAAGGTATAAATAATATCCATATTTTATCCCTCTCTTCAAAAATAATAATAATAATAATCTTTTTGCTTTTTTTGTTTTTATGTTTGGAATTGGAATTGATTTCAGGGCGAGTATCACGAACATGCATTTGATGATGCCTGTTTGATGATAACAATCTCGTTTACAATTTCTTATTCTAGTAATAACTTCGAAACATGAAACCTGAAACTGTTAAGACGTTTTCAAAATAATACTTTGTTAAATAATTATTATTAGACCAAACTTGATTAATTTAACCGTCTATTTTTTGTATTTTCAACTAAGATAATACTAATTATTATTATTTATTTATTCTTTTTTTTTTTTTTGGTTTTGCAGCTTAGCAACTATTGTTCCTTTGAGGGAGTGCTTTACTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAGAGTTTTGAAGGCAATTATTATTATTATTATTATTATTATTATTTACTATGTTAATTACAAATCACAACTCTATAATTTTCCTATTTTGCAAAACCATACCCTCCTATTTTTCAAAATTATTCAAACACCCACATTGTCCAAAATCCATACCCTTAAATTTTACAAGGAGTACACTTGCAAAATAGGACATGATTTACAAAATTCATTAAAAAAAAAAAATTCCCAAAATAATTCTAAAATTGAATATTTTCTTTTCTCCAGGAACTCCAAAAGTCATGAAAGCAGAAAAGCCCACCGAAAATGAGGTATTACCCATTTGAAAAACCAAATTATTATCCAACAGGGAGCTCAATTTCATTTTTTTTTTTTTTGACTATTTACTAATGATTTATATTGGAATTTGCAATTGAATAGAATGTAAAGTCAGTCTCCAACATGTTTGCTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTACTAATTGCAATCAAAATATGAAAAAAAAAAAAAAAAAAACTAATTAATCATCTATTAAAATTTTTGTAATTACTTCGTTTTGGAGCATAATAATAAAGTTTATACTATCGATTCTAAGGTTACGGTGAACGGGACGCCATACCACAAAAGCTGCTTCAAATGTAGCCATGGAGGATGCACAATAAGCCCATCAAATTACATAGCACATGAGGGAAAACTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAGGGAAATTACAGCCAACTTGAAACTGAGCGACAAAAGAACAATTCATCAGTGGCAATGAAATTAACCACTCCAATGGAAATTGCAGCTGAATCATAG

mRNA sequence

ATGGCTAGCTTTTCAGGAACCACACAAAAGTGCATGGCTTGTGACAAGACAGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGGATTTTCCATAAGGCTTGTTTCCGATGCTACCATTGTAGGGGCACTCTTAAGCTTAGCAACTATTGTTCCTTTGAGGGAGTGCTTTACTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAGAGAACTCCAAAAGTCATGAAAGCAGAAAAGCCCACCGAAAATGAGAATGTAAAGTCAGTCTCCAACATGTTTGCTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTTACGGTGAACGGGACGCCATACCACAAAAGCTGCTTCAAATGTAGCCATGGAGGATGCACAATAAGCCCATCAAATTACATAGCACATGAGGGAAAACTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAGGGAAATTACAGCCAACTTGAAACTGAGCGACAAAAGAACAATTCATCAGTGGCAATGAAATTAACCACTCCAATGGAAATTGCAGCTGAATCATAG

Coding sequence (CDS)

ATGGCTAGCTTTTCAGGAACCACACAAAAGTGCATGGCTTGTGACAAGACAGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGGATTTTCCATAAGGCTTGTTTCCGATGCTACCATTGTAGGGGCACTCTTAAGCTTAGCAACTATTGTTCCTTTGAGGGAGTGCTTTACTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAGAGAACTCCAAAAGTCATGAAAGCAGAAAAGCCCACCGAAAATGAGAATGTAAAGTCAGTCTCCAACATGTTTGCTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTTACGGTGAACGGGACGCCATACCACAAAAGCTGCTTCAAATGTAGCCATGGAGGATGCACAATAAGCCCATCAAATTACATAGCACATGAGGGAAAACTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAGGGAAATTACAGCCAACTTGAAACTGAGCGACAAAAGAACAATTCATCAGTGGCAATGAAATTAACCACTCCAATGGAAATTGCAGCTGAATCATAG

Protein sequence

MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKRTPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIEKVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNNSSVAMKLTTPMEIAAES
BLAST of Cla001608 vs. Swiss-Prot
Match: WLIM1_ARATH (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.4e-80
Identity = 139/175 (79.43%), Postives = 151/175 (86.29%), Query Frame = 1

Query: 3   SFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCRPH 62
           +F+GTTQKCMACDKTVYLVDKLTADNR++HKACFRC+HC+GTLKLSNY SFEGVLYCRPH
Sbjct: 2   AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61

Query: 63  YDQLFKRTGSLDKR---TPKVMKAEKPTENENVKS--VSNMFAGTRDKCSGCTKTVYPIE 122
           +DQ FKRTGSL+K    TPK+ K ++P E E      VSNMF GTR+KC GC KTVYPIE
Sbjct: 62  FDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIE 121

Query: 123 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE 173
           KV+VNGT YHKSCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE
Sbjct: 122 KVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

BLAST of Cla001608 vs. Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 4.5e-71
Identity = 123/179 (68.72%), Postives = 144/179 (80.45%), Query Frame = 1

Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           M SF+GTTQKC  C+KTVYLVDKL A+ R++HKACFRC+HC  TLKLSN+ SF+GV+YCR
Sbjct: 1   MKSFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKP--TENENVKSVSNMFAGTRDKCSGCTKTVYP 120
            H+DQLFKRTGSL+K    TPK  K E+    E ++   +S+ F GTRDKC+ C K VYP
Sbjct: 61  HHFDQLFKRTGSLEKSFDGTPK-FKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYP 120

Query: 121 IEKVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETE 175
           IE+V V+GT YH++CFKC HGGCTISPSNYIAHEG+LYCKHHHIQLFK+KGNYSQLE E
Sbjct: 121 IERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVE 178


HSP 2 Score: 82.4 bits (202), Expect = 6.0e-15
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 1

Query: 4   FSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCRPHY 63
           F GT  KC AC K VY ++++  D   +H+ACF+C H   T+  SNY + EG LYC+ H+
Sbjct: 103 FEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHH 162

Query: 64  DQLFKRTGS---LDKRTPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKT 113
            QLFK+ G+   L+        AE  T+N   ++     A T++  +  T+T
Sbjct: 163 IQLFKKKGNYSQLEVEETVAAPAESETQNTETQNAETQNADTQNADTQNTET 214

BLAST of Cla001608 vs. Swiss-Prot
Match: WLI2A_ARATH (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.1e-60
Identity = 108/173 (62.43%), Postives = 128/173 (73.99%), Query Frame = 1

Query: 3   SFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCRPH 62
           SF+GT QKC AC+KTVY V+ L+AD   +HKACF+C HC+  L+LSNY S EGV+YCRPH
Sbjct: 2   SFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPH 61

Query: 63  YDQLFKRTGSLDK--RTPKVMKAEKPTE--NENVKSVSNMFAGTRDKCSGCTKTVYPIEK 122
           ++QLFK +GS  K  ++P     +KPT   N     ++ MF+GT+DKC+ CTKTVYPIEK
Sbjct: 62  FEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIEK 121

Query: 123 VTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL 172
           VTV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L
Sbjct: 122 VTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174


HSP 2 Score: 89.4 bits (220), Expect = 4.9e-17
Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 1

Query: 99  FAGTRDKCSGCTKTVYPIEKVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHH 158
           F GT+ KC  C KTVYP+E ++ +G  YHK+CFKCSH    +  SNY + EG +YC+ H 
Sbjct: 3   FTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHF 62

Query: 159 IQLFKEKGNYSQLETERQKNNSSVAMKLT 188
            QLFKE G++S       KN  S A  LT
Sbjct: 63  EQLFKESGSFS-------KNFQSPAKPLT 84

BLAST of Cla001608 vs. Swiss-Prot
Match: WLI2B_ARATH (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.2e-57
Identity = 106/198 (53.54%), Postives = 137/198 (69.19%), Query Frame = 1

Query: 3   SFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCRPH 62
           SF+GT QKC AC+KTVY V+ L+AD   +HK+CF+C HC+  L+LS+Y S EGVLYC+PH
Sbjct: 2   SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61

Query: 63  YDQLFKRTGSLDKRTPKVMKAEKPTENENVKS---VSNMFAGTRDKCSGCTKTVYPIEKV 122
           ++QLFK +GS +K      K+   +  E  ++   V+  F+GT++KC+ C+KTVYPIEKV
Sbjct: 62  FEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKV 121

Query: 123 TVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL-ETERQKN 182
           TV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L ++   K 
Sbjct: 122 TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKR 181

Query: 183 NSSVAMKLTTPMEIAAES 197
           +++ A+    P     ES
Sbjct: 182 SAAAAVAAGVPAASVPES 199

BLAST of Cla001608 vs. Swiss-Prot
Match: PLI2C_ARATH (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana GN=PLIM2C PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 7.2e-53
Identity = 94/193 (48.70%), Postives = 128/193 (66.32%), Query Frame = 1

Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+F+GTT KC ACDKTVY++D +T +   +HK+CFRC HC GTL + NY S +GVLYC+
Sbjct: 1   MAAFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCK 60

Query: 61  PHYDQLFKRTGSLDKRTPKVMKAEKPTENENVKS-VSNMFAGTRDKCSGCTKTVYPIEKV 120
            H++QLFK +G+  K      K EK  +     + +S+ F+GT+DKC+ C KTVYP+EK+
Sbjct: 61  THFEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKM 120

Query: 121 TVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQ-LETERQKN 180
           T+ G  YHK+CF+C+H GC ++ S+Y A +G LYCK H  QLF EKGNY+  L+      
Sbjct: 121 TMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHR 180

Query: 181 NSSVAMKLTTPME 192
            S+     T P E
Sbjct: 181 RSTAEEDKTEPKE 193

BLAST of Cla001608 vs. TrEMBL
Match: A0A0A0K2E5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071340 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.0e-102
Identity = 179/201 (89.05%), Postives = 189/201 (94.03%), Query Frame = 1

Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MASFSGTTQKCMAC+KTVYLVDKLTADNR+FHKACFRCYHC+GTLKLSNYCSFEGVLYCR
Sbjct: 1   MASFSGTTQKCMACEKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPKVM++EKP+ENEN KSVSNMF GTRDKCSGCTKTVY IE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKVMRSEKPSENENAKSVSNMFGGTRDKCSGCTKTVYLIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNG  YHKSCFKCSHGGCTISPS+YIAHEGKLYCKHHHIQLF EKGNYSQLETERQK
Sbjct: 121 KVTVNGNAYHKSCFKCSHGGCTISPSSYIAHEGKLYCKHHHIQLFMEKGNYSQLETERQK 180

Query: 181 NNSSV--AMKLTTPMEIAAES 197
           NNS++  A+KLTTPMEIAAES
Sbjct: 181 NNSAIAAAIKLTTPMEIAAES 201

BLAST of Cla001608 vs. TrEMBL
Match: A0SVL2_POPCN (LIM domain protein GLIM1a OS=Populus canescens GN=GLIM1a PE=2 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 3.4e-94
Identity = 164/199 (82.41%), Postives = 177/199 (88.94%), Query Frame = 1

Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+FSGT QKCMACDKTVYLVDKLTADNR+FHKACFRC+HCRGTLKLSNYCSFEGVLYCR
Sbjct: 1   MAAFSGTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCDKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N     +   T +EIAAES
Sbjct: 181 N----PVVSITAVEIAAES 195

BLAST of Cla001608 vs. TrEMBL
Match: A9PB06_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09040g PE=2 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 7.7e-94
Identity = 163/199 (81.91%), Postives = 177/199 (88.94%), Query Frame = 1

Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+F+GT QKCMACDKTVYLVDKLTADNR+FHKACFRC+HCRGTLKLSNYCSFEGVLYCR
Sbjct: 1   MAAFAGTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCDKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N     +   T +EIAAES
Sbjct: 181 N----PVVSITAVEIAAES 195

BLAST of Cla001608 vs. TrEMBL
Match: A9PG33_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 2.9e-93
Identity = 162/199 (81.41%), Postives = 177/199 (88.94%), Query Frame = 1

Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+F+GT QKCMACDKTVYLVDKLTADNR+FHKACFRC+HCRGTLKLSNYCSFEGVLYCR
Sbjct: 1   MAAFAGTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCDKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKL+CKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLHCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N     +   T +EIAAES
Sbjct: 181 N----PVVSITAVEIAAES 195

BLAST of Cla001608 vs. TrEMBL
Match: B9GIA5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30020g PE=4 SV=2)

HSP 1 Score: 349.4 bits (895), Expect = 2.9e-93
Identity = 163/199 (81.91%), Postives = 178/199 (89.45%), Query Frame = 1

Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+F+GT QKCMACDKTVYLVDKLTADNRI+HKACFRC+HCRGTLKLSNY SFEGVLYCR
Sbjct: 1   MAAFAGTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCRGTLKLSNYSSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCNKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N  +V +   T +EIAAES
Sbjct: 181 NPVTVNI---TAVEIAAES 196

BLAST of Cla001608 vs. NCBI nr
Match: gi|449438317|ref|XP_004136935.1| (PREDICTED: LIM domain-containing protein WLIM1-like [Cucumis sativus])

HSP 1 Score: 379.8 bits (974), Expect = 2.9e-102
Identity = 179/201 (89.05%), Postives = 189/201 (94.03%), Query Frame = 1

Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MASFSGTTQKCMAC+KTVYLVDKLTADNR+FHKACFRCYHC+GTLKLSNYCSFEGVLYCR
Sbjct: 1   MASFSGTTQKCMACEKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPKVM++EKP+ENEN KSVSNMF GTRDKCSGCTKTVY IE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKVMRSEKPSENENAKSVSNMFGGTRDKCSGCTKTVYLIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNG  YHKSCFKCSHGGCTISPS+YIAHEGKLYCKHHHIQLF EKGNYSQLETERQK
Sbjct: 121 KVTVNGNAYHKSCFKCSHGGCTISPSSYIAHEGKLYCKHHHIQLFMEKGNYSQLETERQK 180

Query: 181 NNSSV--AMKLTTPMEIAAES 197
           NNS++  A+KLTTPMEIAAES
Sbjct: 181 NNSAIAAAIKLTTPMEIAAES 201

BLAST of Cla001608 vs. NCBI nr
Match: gi|117950161|gb|ABK58464.1| (LIM domain protein GLIM1a [Populus tremula x Populus alba])

HSP 1 Score: 352.4 bits (903), Expect = 4.9e-94
Identity = 164/199 (82.41%), Postives = 177/199 (88.94%), Query Frame = 1

Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+FSGT QKCMACDKTVYLVDKLTADNR+FHKACFRC+HCRGTLKLSNYCSFEGVLYCR
Sbjct: 1   MAAFSGTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCDKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N     +   T +EIAAES
Sbjct: 181 N----PVVSITAVEIAAES 195

BLAST of Cla001608 vs. NCBI nr
Match: gi|566187089|ref|XP_002313186.2| (hypothetical protein POPTR_0009s09040g [Populus trichocarpa])

HSP 1 Score: 351.3 bits (900), Expect = 1.1e-93
Identity = 163/199 (81.91%), Postives = 177/199 (88.94%), Query Frame = 1

Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+F+GT QKCMACDKTVYLVDKLTADNR+FHKACFRC+HCRGTLKLSNYCSFEGVLYCR
Sbjct: 1   MAAFAGTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCDKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N     +   T +EIAAES
Sbjct: 181 N----PVVSITAVEIAAES 195

BLAST of Cla001608 vs. NCBI nr
Match: gi|566151782|ref|XP_002298780.2| (hypothetical protein POPTR_0001s30020g [Populus trichocarpa])

HSP 1 Score: 349.4 bits (895), Expect = 4.2e-93
Identity = 163/199 (81.91%), Postives = 178/199 (89.45%), Query Frame = 1

Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+F+GT QKCMACDKTVYLVDKLTADNRI+HKACFRC+HCRGTLKLSNY SFEGVLYCR
Sbjct: 1   MAAFAGTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCRGTLKLSNYSSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCNKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N  +V +   T +EIAAES
Sbjct: 181 NPVTVNI---TAVEIAAES 196

BLAST of Cla001608 vs. NCBI nr
Match: gi|118487010|gb|ABK95336.1| (unknown [Populus trichocarpa])

HSP 1 Score: 349.4 bits (895), Expect = 4.2e-93
Identity = 162/199 (81.41%), Postives = 177/199 (88.94%), Query Frame = 1

Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCR 60
           MA+F+GT QKCMACDKTVYLVDKLTADNR+FHKACFRC+HCRGTLKLSNYCSFEGVLYCR
Sbjct: 1   MAAFAGTQQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKR---TPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIE 120
           PHYDQLFKRTGSLDK    TPK++K EKP +NEN   VSN+FAGTR+KC GC KTVYPIE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSNLFAGTREKCVGCDKTVYPIE 120

Query: 121 KVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTPYH+SCFKC+HGGCTISPSNYIAHEGKL+CKHHHIQLFKEKGNYSQLE ER+K
Sbjct: 121 KVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLHCKHHHIQLFKEKGNYSQLENEREK 180

Query: 181 NNSSVAMKLTTPMEIAAES 197
           N     +   T +EIAAES
Sbjct: 181 N----PVVSITAVEIAAES 195

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
WLIM1_ARATH1.4e-8079.43LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana GN=WLIM1 PE=1 SV=1[more]
SF3_HELAN4.5e-7168.72Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1[more]
WLI2A_ARATH6.1e-6062.43LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana GN=WLIN2A PE=1 SV=1[more]
WLI2B_ARATH2.2e-5753.54LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1[more]
PLI2C_ARATH7.2e-5348.70LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana GN=PLIM2C PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K2E5_CUCSA2.0e-10289.05Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071340 PE=4 SV=1[more]
A0SVL2_POPCN3.4e-9482.41LIM domain protein GLIM1a OS=Populus canescens GN=GLIM1a PE=2 SV=1[more]
A9PB06_POPTR7.7e-9481.91Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09040g PE=2 SV=1[more]
A9PG33_POPTR2.9e-9381.41Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
B9GIA5_POPTR2.9e-9381.91Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30020g PE=4 SV=2[more]
Match NameE-valueIdentityDescription
gi|449438317|ref|XP_004136935.1|2.9e-10289.05PREDICTED: LIM domain-containing protein WLIM1-like [Cucumis sativus][more]
gi|117950161|gb|ABK58464.1|4.9e-9482.41LIM domain protein GLIM1a [Populus tremula x Populus alba][more]
gi|566187089|ref|XP_002313186.2|1.1e-9381.91hypothetical protein POPTR_0009s09040g [Populus trichocarpa][more]
gi|566151782|ref|XP_002298780.2|4.2e-9381.91hypothetical protein POPTR_0001s30020g [Populus trichocarpa][more]
gi|118487010|gb|ABK95336.1|4.2e-9381.41unknown [Populus trichocarpa][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla001608Cla001608gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla001608Cla001608.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla001608.1.cds1Cla001608.1.cds1CDS
Cla001608.1.cds2Cla001608.1.cds2CDS
Cla001608.1.cds3Cla001608.1.cds3CDS
Cla001608.1.cds4Cla001608.1.cds4CDS
Cla001608.1.cds5Cla001608.1.cds5CDS


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeGENE3DG3DSA:2.10.110.10coord: 98..168
score: 9.7E-25coord: 4..71
score: 8.0
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 106..161
score: 6.0E-13coord: 11..65
score: 1.
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 105..157
score: 5.7E-15coord: 10..62
score: 5.3
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 11..45
scor
IPR001781Zinc finger, LIM-typePROFILEPS50023LIM_DOMAIN_2coord: 104..164
score: 12.702coord: 9..69
score: 13
NoneNo IPR availablePANTHERPTHR24206FAMILY NOT NAMEDcoord: 1..195
score: 7.9E
NoneNo IPR availablePANTHERPTHR24206:SF29SUBFAMILY NOT NAMEDcoord: 1..195
score: 7.9E
NoneNo IPR availableunknownSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 37..76
score: 1.22E-13coord: 4..36
score: 6.63E-10coord: 98..131
score: 2.06E-9coord: 132..171
score: 1.16