Cla001608.1 (mRNA) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTAGCTTTTCAGGAACCACACAAAAGTGCATGGCTTGTGACAAGACAGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGGATTTTCCATAAGGCTTGTTTCCGATGCTACCATTGTAGGGGCACTCTTAAGGTATAAATAATATCCATATTTTATCCCTCTCTTCAAAAATAATAATAATAATAATCTTTTTGCTTTTTTTGTTTTTATGTTTGGAATTGGAATTGATTTCAGGGCGAGTATCACGAACATGCATTTGATGATGCCTGTTTGATGATAACAATCTCGTTTACAATTTCTTATTCTAGTAATAACTTCGAAACATGAAACCTGAAACTGTTAAGACGTTTTCAAAATAATACTTTGTTAAATAATTATTATTAGACCAAACTTGATTAATTTAACCGTCTATTTTTTGTATTTTCAACTAAGATAATACTAATTATTATTATTTATTTATTCTTTTTTTTTTTTTTGGTTTTGCAGCTTAGCAACTATTGTTCCTTTGAGGGAGTGCTTTACTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAGAGTTTTGAAGGCAATTATTATTATTATTATTATTATTATTATTTACTATGTTAATTACAAATCACAACTCTATAATTTTCCTATTTTGCAAAACCATACCCTCCTATTTTTCAAAATTATTCAAACACCCACATTGTCCAAAATCCATACCCTTAAATTTTACAAGGAGTACACTTGCAAAATAGGACATGATTTACAAAATTCATTAAAAAAAAAAAATTCCCAAAATAATTCTAAAATTGAATATTTTCTTTTCTCCAGGAACTCCAAAAGTCATGAAAGCAGAAAAGCCCACCGAAAATGAGGTATTACCCATTTGAAAAACCAAATTATTATCCAACAGGGAGCTCAATTTCATTTTTTTTTTTTTTGACTATTTACTAATGATTTATATTGGAATTTGCAATTGAATAGAATGTAAAGTCAGTCTCCAACATGTTTGCTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTACTAATTGCAATCAAAATATGAAAAAAAAAAAAAAAAAAACTAATTAATCATCTATTAAAATTTTTGTAATTACTTCGTTTTGGAGCATAATAATAAAGTTTATACTATCGATTCTAAGGTTACGGTGAACGGGACGCCATACCACAAAAGCTGCTTCAAATGTAGCCATGGAGGATGCACAATAAGCCCATCAAATTACATAGCACATGAGGGAAAACTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAGGGAAATTACAGCCAACTTGAAACTGAGCGACAAAAGAACAATTCATCAGTGGCAATGAAATTAACCACTCCAATGGAAATTGCAGCTGAATCATAG ATGGCTAGCTTTTCAGGAACCACACAAAAGTGCATGGCTTGTGACAAGACAGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGGATTTTCCATAAGGCTTGTTTCCGATGCTACCATTGTAGGGGCACTCTTAAGCTTAGCAACTATTGTTCCTTTGAGGGAGTGCTTTACTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAGAGAACTCCAAAAGTCATGAAAGCAGAAAAGCCCACCGAAAATGAGAATGTAAAGTCAGTCTCCAACATGTTTGCTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTTACGGTGAACGGGACGCCATACCACAAAAGCTGCTTCAAATGTAGCCATGGAGGATGCACAATAAGCCCATCAAATTACATAGCACATGAGGGAAAACTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAGGGAAATTACAGCCAACTTGAAACTGAGCGACAAAAGAACAATTCATCAGTGGCAATGAAATTAACCACTCCAATGGAAATTGCAGCTGAATCATAG ATGGCTAGCTTTTCAGGAACCACACAAAAGTGCATGGCTTGTGACAAGACAGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGGATTTTCCATAAGGCTTGTTTCCGATGCTACCATTGTAGGGGCACTCTTAAGCTTAGCAACTATTGTTCCTTTGAGGGAGTGCTTTACTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAGAGAACTCCAAAAGTCATGAAAGCAGAAAAGCCCACCGAAAATGAGAATGTAAAGTCAGTCTCCAACATGTTTGCTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTTACGGTGAACGGGACGCCATACCACAAAAGCTGCTTCAAATGTAGCCATGGAGGATGCACAATAAGCCCATCAAATTACATAGCACATGAGGGAAAACTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAGGGAAATTACAGCCAACTTGAAACTGAGCGACAAAAGAACAATTCATCAGTGGCAATGAAATTAACCACTCCAATGGAAATTGCAGCTGAATCATAG MASFSGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCYHCRGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKRTPKVMKAEKPTENENVKSVSNMFAGTRDKCSGCTKTVYPIEKVTVNGTPYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNNSSVAMKLTTPMEIAAES
BLAST of Cla001608 vs. Swiss-Prot
Match: WLIM1_ARATH (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana GN=WLIM1 PE=1 SV=1) HSP 1 Score: 300.4 bits (768), Expect = 1.4e-80 Identity = 139/175 (79.43%), Postives = 151/175 (86.29%), Query Frame = 1
BLAST of Cla001608 vs. Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1) HSP 1 Score: 268.9 bits (686), Expect = 4.5e-71 Identity = 123/179 (68.72%), Postives = 144/179 (80.45%), Query Frame = 1
HSP 2 Score: 82.4 bits (202), Expect = 6.0e-15 Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 1
BLAST of Cla001608 vs. Swiss-Prot
Match: WLI2A_ARATH (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana GN=WLIN2A PE=1 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 6.1e-60 Identity = 108/173 (62.43%), Postives = 128/173 (73.99%), Query Frame = 1
HSP 2 Score: 89.4 bits (220), Expect = 4.9e-17 Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 1
BLAST of Cla001608 vs. Swiss-Prot
Match: WLI2B_ARATH (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 2.2e-57 Identity = 106/198 (53.54%), Postives = 137/198 (69.19%), Query Frame = 1
BLAST of Cla001608 vs. Swiss-Prot
Match: PLI2C_ARATH (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana GN=PLIM2C PE=1 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 7.2e-53 Identity = 94/193 (48.70%), Postives = 128/193 (66.32%), Query Frame = 1
BLAST of Cla001608 vs. TrEMBL
Match: A0A0A0K2E5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071340 PE=4 SV=1) HSP 1 Score: 379.8 bits (974), Expect = 2.0e-102 Identity = 179/201 (89.05%), Postives = 189/201 (94.03%), Query Frame = 1
BLAST of Cla001608 vs. TrEMBL
Match: A0SVL2_POPCN (LIM domain protein GLIM1a OS=Populus canescens GN=GLIM1a PE=2 SV=1) HSP 1 Score: 352.4 bits (903), Expect = 3.4e-94 Identity = 164/199 (82.41%), Postives = 177/199 (88.94%), Query Frame = 1
BLAST of Cla001608 vs. TrEMBL
Match: A9PB06_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09040g PE=2 SV=1) HSP 1 Score: 351.3 bits (900), Expect = 7.7e-94 Identity = 163/199 (81.91%), Postives = 177/199 (88.94%), Query Frame = 1
BLAST of Cla001608 vs. TrEMBL
Match: A9PG33_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 349.4 bits (895), Expect = 2.9e-93 Identity = 162/199 (81.41%), Postives = 177/199 (88.94%), Query Frame = 1
BLAST of Cla001608 vs. TrEMBL
Match: B9GIA5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30020g PE=4 SV=2) HSP 1 Score: 349.4 bits (895), Expect = 2.9e-93 Identity = 163/199 (81.91%), Postives = 178/199 (89.45%), Query Frame = 1
BLAST of Cla001608 vs. NCBI nr
Match: gi|449438317|ref|XP_004136935.1| (PREDICTED: LIM domain-containing protein WLIM1-like [Cucumis sativus]) HSP 1 Score: 379.8 bits (974), Expect = 2.9e-102 Identity = 179/201 (89.05%), Postives = 189/201 (94.03%), Query Frame = 1
BLAST of Cla001608 vs. NCBI nr
Match: gi|117950161|gb|ABK58464.1| (LIM domain protein GLIM1a [Populus tremula x Populus alba]) HSP 1 Score: 352.4 bits (903), Expect = 4.9e-94 Identity = 164/199 (82.41%), Postives = 177/199 (88.94%), Query Frame = 1
BLAST of Cla001608 vs. NCBI nr
Match: gi|566187089|ref|XP_002313186.2| (hypothetical protein POPTR_0009s09040g [Populus trichocarpa]) HSP 1 Score: 351.3 bits (900), Expect = 1.1e-93 Identity = 163/199 (81.91%), Postives = 177/199 (88.94%), Query Frame = 1
BLAST of Cla001608 vs. NCBI nr
Match: gi|566151782|ref|XP_002298780.2| (hypothetical protein POPTR_0001s30020g [Populus trichocarpa]) HSP 1 Score: 349.4 bits (895), Expect = 4.2e-93 Identity = 163/199 (81.91%), Postives = 178/199 (89.45%), Query Frame = 1
BLAST of Cla001608 vs. NCBI nr
Match: gi|118487010|gb|ABK95336.1| (unknown [Populus trichocarpa]) HSP 1 Score: 349.4 bits (895), Expect = 4.2e-93 Identity = 162/199 (81.41%), Postives = 177/199 (88.94%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
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