Cp4.1LG04g07010 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g07010
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRNA-binding protein
LocationCp4.1LG04 : 4569965 .. 4572378 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTTCTTCGATGTAGCTCGTGTAATGGCTGAAGAGGGGGAGTATCGGTGCTTTATTGGCGGCCTTTCTTGGTCAACTAGTGACAGAGGTCTTAAAGAAGCATTCGAAAAGTTTGGCCATCTTCAAGAGGCCAAGGTATCTGATTTCTCTTTTTCCCTATTTTAGCTGATTATAGTCTAAATTCTTGCTGCTGTATTACGGTTCTTTTTCTTTTTTTTGTTTAATTTTGGAATGGATGTTGCTTGATCATTGGGTCTTCCTATTTTTTCATATCTTCCTTGAAATGAAATGGTGAAAAGAACTCCTTGAGTTATGATTCTTCTATACACATTTAATGGCTATTGATTAATGTTTAAAAATAGAAATGTGAGAAATGTGAGGTTGGTGCTTGTTGCATTTGATGATAATGGATGATACCGTAAGGTCTCTGCTGCTTAAGGATGTTCCATAGTCACCCTTAGCATTTTTTGATGATGCATCATCTGTTTCGCAGGTAGTTGTTGACAAGTTTTCTGGACGTTCCCGTGGTTTTGGTTTTGTTACTTTTGATGAGAAGAAAGCTATGGATGAGGCAATCAAAGCCATGAATGGAATGGATTTAGATGGCCGGGCTATTACAGTTGATAAGGCTCAGCCTAACCAAGGTTCAGGTAGAGACAACGATGGTGATCGTCCACGTGGTCGTGACAATGATCGTGATCGAAATCGAGATTTTGGTGGTGGGCGTGGATCTAACAGTAGAGATTGCTTTAAATGTGGGAAGCCAGGGCATTTTGCCCGGGAATGTCCCAGTGAAGGCGGTAGAGGAGGTAGGTATGGAGGAAGGGATGACAAATATAGTGGTGGTGGCGGCGGCGGCGGTGGTGGCAGTGGTCGTTATGGACCAGATCGAAATGGAGATAGATCTGGTGGGCGCAATAGGGATACTGGTGATCGAGGAGGTTCGGGAAGTGATCGATACAGTCGCGACCGCTCTGGGCCATATGAACGACGGAGTTCAGGTTCTGGTGGCTTTCGTTCTTGATAGAATCGTGTCTTCTCTGTTAAGGTGTGTAATTCATCTTAACTCGACTGGTTGGATTCATTATGGCTGCCTTATACTGATGACTTGAATTTATGTCCACATTAAATGCAGCTTACATGGAGGGATCTTGCTGTTATGTCTTGCAGAGTGTTCATGTTTCTTTCAACAGGTTGTCTATGTTACAGTTCAGATATCTGAAGTGCAGAACTTGGCGTTAGTATTGAGACATTTGTGTTCCTATGTGATGAATTTGGTATCTTGGTACAATGGTGTCTAATGTGTTCTTGACATATTCATTCAAATCGGGTTTTATGGTCTTTGAATGCCAATGTAGCTGCTGGATTACTTATCACAGGGAAATTGCAATAACTGCTAAAAATTTCTATTAAAGTACAACTAGGCCTGGTTTTTTATCTGGATGGGTATTGAAAGGATCGGGTTTTTGATAAGCTGCGACTAGTGATCTGTGTCCCGACCCGGAAAGTTGGAAGTGAAATCTCCATTTCAGGACGTTCTTCCCATTGTCTTGGAGGAATTTACAGGTAATTACTCTTCTTTCTGGTGCCTTCTACTAGTATGATGACCTATCTATCTATCACCTGTTGTGTTATATTGATTGTGTAAACTTTTTGGCAGCATTGTTCCTTTTTATGATCTTTTTGGGTGCATAATACCGTTTCTTGTTAACTTAAAACATACCAAAGCCTTTGGGATGCTCAAGCAATTTTGCAAATTAAATCATTTAATCTACAAATACGTCCTGCTGGCTTATGGTCGAGTGGTCTCGTACACGCTAAAACGCTCGGCAAGTTGTTTGGAAGCTCTTGAGAGTTCAGCAACTGCTGCCCTATCTTTTCCACTTGTGATTCCTATTTCCAGTCTGCTCTTGTTGGGGGAGTCTTTTGGTGTTCTTGCTTTGTCTCCGGATCTGCTTGTGTTCTTGGTTTTGTTTGCGGAGATTGATTCAGATGTTTGGTGTTTCTATCATGATCATCATCGTCCCTTTCACCTTCTCTGCTTGTTGGATGATCAGTCTGGTTCCTTGTCCTTAGAGGATTCTTTCTGTTCTTTTCCTTGTCTGTTATACAATTAAAGGAAACCATCTCGTGTCGACTCTCCCCCGTTTGCTATACCATGTGGAAAGTGTTATAGGTGTGACCGAGGAAGCTAAATAGCGTCCCGACACGACCCCGACTCCAACCCCGACAACAAATGTTTACAGATTATATTTCAAACTCCTTTGGCTTTTTTGCTTTTTTTTTTCATGATTTCTTGCCCATGGTTGCTTTCTTGTATCAATTGTCATATAGGATGGTTTTTATTTTTATTTTTGTTCATTTATACATTTTTTTTTCTCCATACATGAGACATTTGCGATTGTTTTGTT

mRNA sequence

ATGTGGTTCTTCGATGTAGCTCGTGTAATGGCTGAAGAGGGGGAGTATCGGTGCTTTATTGGCGGCCTTTCTTGGTCAACTAGTGACAGAGGTCTTAAAGAAGCATTCGAAAAGTTTGGCCATCTTCAAGAGGCCAAGGTAGTTGTTGACAAGTTTTCTGGACGTTCCCGTGGTTTTGGTTTTGTTACTTTTGATGAGAAGAAAGCTATGGATGAGGCAATCAAAGCCATGAATGGAATGGATTTAGATGGCCGGGCTATTACAATCGAAATGGAGATAGATCTGGTGGGCGCAATAGGGATACTGGTGATCGAGGAGGTTCGGGAAGTGATCGATACAGTCGCGACCGCTCTGGGCCATATGAACGACGGAGTTCAGGTTCTGGTGGCTTTCGTTCTTGATAGAATCGTGTCTTCTCTGTTAAGCTTACATGGAGGGATCTTGCTGTTATGTCTTGCAGAGTGTTCATGTTTCTTTCAACAGGTTGTCTATGTTACAGTTCAGATATCTGAAGTGCAGAACTTGGCGTTAGTATTGAGACATTTGTGTTCCTATGTGATGAATTTGGATCGGGTTTTTGATAAGCTGCGACTAGTGATCTGTGTCCCGACCCGGAAAGTTGGAAGTGAAATCTCCATTTCAGGACGTTCTTCCCATTGTCTTGGAGGAATTTACAGCATTGTTCCTTTTTATGATCTTTTTGGGTGCATAATACCGTTTCTTGTTAACTTAAAACATACCAAAGCCTTTGGGATGCTCAAGCAATTTTGCAAATTAAATCATTTAATCTACAAATACGTCCTGCTGGCTTATGGTCGAGTGGTCTCGTACACGCTAAAACGCTCGGCAAGTTGTTTGGAAGCTCTTGAGAGTTCAGCAACTGCTGCCCTATCTTTTCCACTTGTGATTCCTATTTCCAGTCTGCTCTTGTTGGGGGAGTCTTTTGGTGTTCTTGCTTTGTCTCCGGATCTGCTTGTGTTCTTGGTTTTGTTTGCGGAGATTGATTCAGATGTTTGGTGTTTCTATCATGATCATCATCGTCCCTTTCACCTTCTCTGCTTGTTGGATGATCAGTCTGGTTCCTTGTCCTTAGAGGATTCTTTCTGTTCTTTTCCTTGTCTGTTATACAATTAAAGGAAACCATCTCGTGTCGACTCTCCCCCGTTTGCTATACCATGTGGAAAGTGTTATAGGTGTGACCGAGGAAGCTAAATAGCGTCCCGACACGACCCCGACTCCAACCCCGACAACAAATGTTTACAGATTATATTTCAAACTCCTTTGGCTTTTTTGCTTTTTTTTTTCATGATTTCTTGCCCATGGTTGCTTTCTTGTATCAATTGTCATATAGGATGGTTTTTATTTTTATTTTTGTTCATTTATACATTTTTTTTTCTCCATACATGAGACATTTGCGATTGTTTTGTT

Coding sequence (CDS)

ATGTGGTTCTTCGATGTAGCTCGTGTAATGGCTGAAGAGGGGGAGTATCGGTGCTTTATTGGCGGCCTTTCTTGGTCAACTAGTGACAGAGGTCTTAAAGAAGCATTCGAAAAGTTTGGCCATCTTCAAGAGGCCAAGGTAGTTGTTGACAAGTTTTCTGGACGTTCCCGTGGTTTTGGTTTTGTTACTTTTGATGAGAAGAAAGCTATGGATGAGGCAATCAAAGCCATGAATGGAATGGATTTAGATGGCCGGGCTATTACAATCGAAATGGAGATAGATCTGGTGGGCGCAATAGGGATACTGGTGATCGAGGAGGTTCGGGAAGTGATCGATACAGTCGCGACCGCTCTGGGCCATATGAACGACGGAGTTCAGGTTCTGGTGGCTTTCGTTCTTGATAGAATCGTGTCTTCTCTGTTAAGCTTACATGGAGGGATCTTGCTGTTATGTCTTGCAGAGTGTTCATGTTTCTTTCAACAGGTTGTCTATGTTACAGTTCAGATATCTGAAGTGCAGAACTTGGCGTTAGTATTGAGACATTTGTGTTCCTATGTGATGAATTTGGATCGGGTTTTTGATAAGCTGCGACTAGTGATCTGTGTCCCGACCCGGAAAGTTGGAAGTGAAATCTCCATTTCAGGACGTTCTTCCCATTGTCTTGGAGGAATTTACAGCATTGTTCCTTTTTATGATCTTTTTGGGTGCATAATACCGTTTCTTGTTAACTTAAAACATACCAAAGCCTTTGGGATGCTCAAGCAATTTTGCAAATTAAATCATTTAATCTACAAATACGTCCTGCTGGCTTATGGTCGAGTGGTCTCGTACACGCTAAAACGCTCGGCAAGTTGTTTGGAAGCTCTTGAGAGTTCAGCAACTGCTGCCCTATCTTTTCCACTTGTGATTCCTATTTCCAGTCTGCTCTTGTTGGGGGAGTCTTTTGGTGTTCTTGCTTTGTCTCCGGATCTGCTTGTGTTCTTGGTTTTGTTTGCGGAGATTGATTCAGATGTTTGGTGTTTCTATCATGATCATCATCGTCCCTTTCACCTTCTCTGCTTGTTGGATGATCAGTCTGGTTCCTTGTCCTTAGAGGATTCTTTCTGTTCTTTTCCTTGTCTGTTATACAATTAA

Protein sequence

MWFFDVARVMAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAIKAMNGMDLDGRAITIEMEIDLVGAIGILVIEEVREVIDTVATALGHMNDGVQVLVAFVLDRIVSSLLSLHGGILLLCLAECSCFFQQVVYVTVQISEVQNLALVLRHLCSYVMNLDRVFDKLRLVICVPTRKVGSEISISGRSSHCLGGIYSIVPFYDLFGCIIPFLVNLKHTKAFGMLKQFCKLNHLIYKYVLLAYGRVVSYTLKRSASCLEALESSATAALSFPLVIPISSLLLLGESFGVLALSPDLLVFLVLFAEIDSDVWCFYHDHHRPFHLLCLLDDQSGSLSLEDSFCSFPCLLYN
Homology
[Close]
BLAST of Cp4.1LG04g07010 vs. Swiss-Prot
Match: RZ1A_ARATH (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.8e-34
Identity = 66/81 (81.48%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 10 MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
          M+E+ EYRCFIGGL+W+TSDRGL++AFEK+GHL EAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1  MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 70 MDEAIKAMNGMDLDGRAITIE 91
          MDEAI AMNGMDLDGR IT++
Sbjct: 61 MDEAIAAMNGMDLDGRTITVD 81

[Close]
BLAST of Cp4.1LG04g07010 vs. Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.4e-22
Identity = 44/75 (58.67%), Postives = 63/75 (84.00%), Query Frame = 1 

Query: 15 EYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAI 74
          EYRCF+GGL+W+T +R L+ AF +FG L ++K++ D+ +GRSRGFGFVTF ++K+M +AI
Sbjct: 7  EYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66

Query: 75 KAMNGMDLDGRAITI 90
          + MNG DLDGR+IT+
Sbjct: 67 EGMNGQDLDGRSITV 81

[Close]
BLAST of Cp4.1LG04g07010 vs. Swiss-Prot
Match: RBG7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-21
Identity = 44/75 (58.67%), Postives = 63/75 (84.00%), Query Frame = 1 

Query: 15 EYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAI 74
          EYRCF+GGL+W+T DR L+ AF ++G + ++K++ D+ +GRSRGFGFVTF ++KAM +AI
Sbjct: 7  EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66

Query: 75 KAMNGMDLDGRAITI 90
          + MNG DLDGR+IT+
Sbjct: 67 EGMNGQDLDGRSITV 81

[Close]
BLAST of Cp4.1LG04g07010 vs. Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-21
Identity = 43/75 (57.33%), Postives = 63/75 (84.00%), Query Frame = 1 

Query: 15 EYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAI 74
          EYRCF+GGL+W+T DR L+ AF ++G + ++K++ D+ +GRSRGFGFVTF ++K+M +AI
Sbjct: 7  EYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66

Query: 75 KAMNGMDLDGRAITI 90
          + MNG DLDGR+IT+
Sbjct: 67 EGMNGQDLDGRSITV 81

[Close]
BLAST of Cp4.1LG04g07010 vs. Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.8e-21
Identity = 43/77 (55.84%), Postives = 64/77 (83.12%), Query Frame = 1 

Query: 13 EGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 72
          E EYRCF+GGL+W+T+D  L++AF +FG + ++K++ D+ +GRSRGFGFVTF ++K+M +
Sbjct: 3  EVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRD 62

Query: 73 AIKAMNGMDLDGRAITI 90
          AI+ MNG +LDGR IT+
Sbjct: 63 AIEGMNGQELDGRNITV 79

[Close]
BLAST of Cp4.1LG04g07010 vs. TrEMBL
Match: A0A0A0K5W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G058610 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.4e-35
Identity = 75/81 (92.59%), Postives = 79/81 (97.53%), Query Frame = 1 

Query: 10 MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
          MA+E EYRCFIGGLSWSTSDRGLKEAFEKFGHL EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 70 MDEAIKAMNGMDLDGRAITIE 91
          MDEAIKAMNGMDLDGR+IT++
Sbjct: 61 MDEAIKAMNGMDLDGRSITVD 81

[Close]
BLAST of Cp4.1LG04g07010 vs. TrEMBL
Match: A0A067KMU6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06000 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.5e-34
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 1 

Query: 10 MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
          M+EE EYRCFIGGLSWSTSDRGLKEAFEKFGHL EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1  MSEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLIEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 70 MDEAIKAMNGMDLDGRAITIE 91
          M+EAI+AMNGMDLDGR IT++
Sbjct: 61 MEEAIEAMNGMDLDGRTITVD 81

[Close]
BLAST of Cp4.1LG04g07010 vs. TrEMBL
Match: B9SCP7_RICCO (Dc50, putative OS=Ricinus communis GN=RCOM_1375720 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.0e-33
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 10 MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
          M+EE EYRCFIGGLSWSTSDRGLKEAFEKFGHL EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1  MSEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 70 MDEAIKAMNGMDLDGRAITIE 91
          M+EAI+ MNGMDLDGR IT++
Sbjct: 61 MEEAIEEMNGMDLDGRTITVD 81

[Close]
BLAST of Cp4.1LG04g07010 vs. TrEMBL
Match: A0A0D3DB07_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.0e-33
Identity = 71/91 (78.02%), Postives = 80/91 (87.91%), Query Frame = 1 

Query: 10  MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
           M+EE EYRCFIGGL+WSTSDRGL++AFEK+GHL EAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1   MSEEVEYRCFIGGLAWSTSDRGLRDAFEKYGHLLEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 70  MDEAIKAMNGMDLDGRAITIEMEIDLVGAIG 101
           MDEAI AMNGMDLDGR IT++    L G  G
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPLQGGSG 91

[Close]
BLAST of Cp4.1LG04g07010 vs. TrEMBL
Match: M4E8U9_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.0e-33
Identity = 71/91 (78.02%), Postives = 80/91 (87.91%), Query Frame = 1 

Query: 10  MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
           M+EE EYRCFIGGL+WSTSDRGL++AFEK+GHL EAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1   MSEEVEYRCFIGGLAWSTSDRGLRDAFEKYGHLLEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 70  MDEAIKAMNGMDLDGRAITIEMEIDLVGAIG 101
           MDEAI AMNGMDLDGR IT++    L G  G
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPLQGGSG 91

[Close]
BLAST of Cp4.1LG04g07010 vs. TAIR10
Match: AT3G26420.1 (AT3G26420.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-35
Identity = 66/81 (81.48%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 10 MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
          M+E+ EYRCFIGGL+W+TSDRGL++AFEK+GHL EAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1  MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 70 MDEAIKAMNGMDLDGRAITIE 91
          MDEAI AMNGMDLDGR IT++
Sbjct: 61 MDEAIAAMNGMDLDGRTITVD 81

[Close]
BLAST of Cp4.1LG04g07010 vs. TAIR10
Match: AT2G21660.1 (AT2G21660.1 cold, circadian rhythm, and rna binding 2)

HSP 1 Score: 105.5 bits (262), Expect = 7.1e-23
Identity = 44/75 (58.67%), Postives = 63/75 (84.00%), Query Frame = 1 

Query: 15 EYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAI 74
          EYRCF+GGL+W+T DR L+ AF ++G + ++K++ D+ +GRSRGFGFVTF ++KAM +AI
Sbjct: 7  EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66

Query: 75 KAMNGMDLDGRAITI 90
          + MNG DLDGR+IT+
Sbjct: 67 EGMNGQDLDGRSITV 81

[Close]
BLAST of Cp4.1LG04g07010 vs. TAIR10
Match: AT4G39260.1 (AT4G39260.1 cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 102.8 bits (255), Expect = 4.6e-22
Identity = 44/77 (57.14%), Postives = 62/77 (80.52%), Query Frame = 1 

Query: 13 EGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 72
          E EYRCF+GGL+W+T+D  L+  F +FG + ++K++ D+ SGRSRGFGFVTF ++KAM +
Sbjct: 3  EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 73 AIKAMNGMDLDGRAITI 90
          AI+ MNG +LDGR IT+
Sbjct: 63 AIEEMNGKELDGRVITV 79

[Close]
BLAST of Cp4.1LG04g07010 vs. TAIR10
Match: AT3G23830.1 (AT3G23830.1 glycine-rich RNA-binding protein 4)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-16
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 1 

Query: 17  RCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAIKA 76
           + F+GGLSW T D  LK+AF  FG + EA V+ D+ +GRSRGFGFV+F  + + + AIK 
Sbjct: 36  KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95

Query: 77  MNGMDLDGRAITIEM 92
           M+G +L+GR I + +
Sbjct: 96  MDGKELNGRQIRVNL 110

[Close]
BLAST of Cp4.1LG04g07010 vs. TAIR10
Match: AT4G13850.1 (AT4G13850.1 glycine-rich RNA-binding protein 2)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-16
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 1 

Query: 17  RCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAIKA 76
           + FIGGLSW T D  L++AF  FG + +AKV+VD+ +GRSRGFGFV F+++ A   AI  
Sbjct: 36  KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95

Query: 77  MNGMDLDGRAITI 90
           M+G +L+GR I +
Sbjct: 96  MDGKELNGRHIRV 108

[Close]
BLAST of Cp4.1LG04g07010 vs. NCBI nr
Match: gi|449438165|ref|XP_004136860.1| (PREDICTED: glycine-rich RNA-binding protein RZ1A [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 3.4e-35
Identity = 75/81 (92.59%), Postives = 79/81 (97.53%), Query Frame = 1 

Query: 10 MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
          MA+E EYRCFIGGLSWSTSDRGLKEAFEKFGHL EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 70 MDEAIKAMNGMDLDGRAITIE 91
          MDEAIKAMNGMDLDGR+IT++
Sbjct: 61 MDEAIKAMNGMDLDGRSITVD 81

[Close]
BLAST of Cp4.1LG04g07010 vs. NCBI nr
Match: gi|659110462|ref|XP_008455237.1| (PREDICTED: glycine-rich RNA-binding protein 10 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 3.4e-35
Identity = 75/81 (92.59%), Postives = 79/81 (97.53%), Query Frame = 1 

Query: 10 MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
          MA+E EYRCFIGGLSWSTSDRGLKEAFEKFGHL EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1  MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 70 MDEAIKAMNGMDLDGRAITIE 91
          MDEAIKAMNGMDLDGR+IT++
Sbjct: 61 MDEAIKAMNGMDLDGRSITVD 81

[Close]
BLAST of Cp4.1LG04g07010 vs. NCBI nr
Match: gi|802600254|ref|XP_012072848.1| (PREDICTED: glycine-rich RNA-binding protein RZ1A [Jatropha curcas])

HSP 1 Score: 154.1 bits (388), Expect = 5.0e-34
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 1 

Query: 10 MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
          M+EE EYRCFIGGLSWSTSDRGLKEAFEKFGHL EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1  MSEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLIEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 70 MDEAIKAMNGMDLDGRAITIE 91
          M+EAI+AMNGMDLDGR IT++
Sbjct: 61 MEEAIEAMNGMDLDGRTITVD 81

[Close]
BLAST of Cp4.1LG04g07010 vs. NCBI nr
Match: gi|729370109|ref|XP_010547817.1| (PREDICTED: glycine-rich RNA-binding protein blt801-like [Tarenaya hassleriana])

HSP 1 Score: 153.3 bits (386), Expect = 8.5e-34
Identity = 72/81 (88.89%), Postives = 78/81 (96.30%), Query Frame = 1 

Query: 10 MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
          M+EE EYRCFIGGLSWSTSDRGL++AFEKFGHL EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1  MSEEVEYRCFIGGLSWSTSDRGLRDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 70 MDEAIKAMNGMDLDGRAITIE 91
          MDEAI AMNGMDLDGR+IT++
Sbjct: 61 MDEAIAAMNGMDLDGRSITVD 81

[Close]
BLAST of Cp4.1LG04g07010 vs. NCBI nr
Match: gi|255565552|ref|XP_002523766.1| (PREDICTED: glycine-rich RNA-binding protein RZ1A [Ricinus communis])

HSP 1 Score: 152.5 bits (384), Expect = 1.4e-33
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 10 MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 69
          M+EE EYRCFIGGLSWSTSDRGLKEAFEKFGHL EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1  MSEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 70 MDEAIKAMNGMDLDGRAITIE 91
          M+EAI+ MNGMDLDGR IT++
Sbjct: 61 MEEAIEEMNGMDLDGRTITVD 81

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g07010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RZ1A_ARATH3.8e-3481.48Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1[more]
GRP2_SINAL7.4e-2258.67Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1[more]
RBG7_ARATH1.3e-2158.67Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1[more]
GRP1_SINAL1.3e-2157.33Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1[more]
GRP1_DAUCA2.8e-2155.84Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1[more]
BLAST of Cp4.1LG04g07010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5W4_CUCSA2.4e-3592.59Uncharacterized protein OS=Cucumis sativus GN=Csa_7G058610 PE=4 SV=1[more]
A0A067KMU6_JATCU3.5e-3490.12Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06000 PE=4 SV=1[more]
B9SCP7_RICCO1.0e-3388.89Dc50, putative OS=Ricinus communis GN=RCOM_1375720 PE=4 SV=1[more]
A0A0D3DB07_BRAOL5.0e-3378.02Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
M4E8U9_BRARP5.0e-3378.02Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
BLAST of Cp4.1LG04g07010 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G26420.12.1e-3581.48 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc... [more]
AT2G21660.17.1e-2358.67 cold, circadian rhythm, and rna binding 2[more]
AT4G39260.14.6e-2257.14 cold, circadian rhythm, and RNA binding 1[more]
AT3G23830.11.7e-1649.33 glycine-rich RNA-binding protein 4[more]
AT4G13850.12.2e-1652.05 glycine-rich RNA-binding protein 2[more]
BLAST of Cp4.1LG04g07010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438165|ref|XP_004136860.1|3.4e-3592.59PREDICTED: glycine-rich RNA-binding protein RZ1A [Cucumis sativus][more]
gi|659110462|ref|XP_008455237.1|3.4e-3592.59PREDICTED: glycine-rich RNA-binding protein 10 [Cucumis melo][more]
gi|802600254|ref|XP_012072848.1|5.0e-3490.12PREDICTED: glycine-rich RNA-binding protein RZ1A [Jatropha curcas][more]
gi|729370109|ref|XP_010547817.1|8.5e-3488.89PREDICTED: glycine-rich RNA-binding protein blt801-like [Tarenaya hassleriana][more]
gi|255565552|ref|XP_002523766.1|1.4e-3388.89PREDICTED: glycine-rich RNA-binding protein RZ1A [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009409 response to cold
biological_process GO:0009631 cold acclimation
biological_process GO:0008150 biological_process
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003729 mRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g07010.1Cp4.1LG04g07010.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 19..87
score: 5.6
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 17..90
score: 1.8
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 16..94
score: 18
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 13..92
score: 2.6
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 13..91
score: 9.37
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 19..91
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g07010Cucsa.345780Cucumber (Gy14) v1cgycpeB0904
Cp4.1LG04g07010CmaCh11G016340Cucurbita maxima (Rimu)cmacpeB154
Cp4.1LG04g07010CmoCh11G014980Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g07010Cla006362Watermelon (97103) v1cpewmB638
Cp4.1LG04g07010Csa7G058610Cucumber (Chinese Long) v2cpecuB695
Cp4.1LG04g07010MELO3C018668Melon (DHL92) v3.5.1cpemeB604
Cp4.1LG04g07010ClCG09G014940Watermelon (Charleston Gray)cpewcgB578
Cp4.1LG04g07010CSPI07G05260Wild cucumber (PI 183967)cpecpiB697
Cp4.1LG04g07010Lsi03G007950Bottle gourd (USVL1VR-Ls)cpelsiB544
Cp4.1LG04g07010MELO3C018668.2Melon (DHL92) v3.6.1cpemedB715
Cp4.1LG04g07010Bhi05G000656Wax gourdcpewgoB0853
Cp4.1LG04g07010CsGy7G004820Cucumber (Gy14) v2cgybcpeB969
Cp4.1LG04g07010Carg24575Silver-seed gourdcarcpeB0920
Cp4.1LG04g07010Carg23987Silver-seed gourdcarcpeB1035
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g07010Cp4.1LG15g02460Cucurbita pepo (Zucchini)cpecpeB268
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g07010Cucurbita maxima (Rimu)cmacpeB538
Cp4.1LG04g07010Cucurbita moschata (Rifu)cmocpeB493
Cp4.1LG04g07010Cucumber (Chinese Long) v3cpecucB0868