Carg24575 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24575
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glycine-rich RNA-binding protein
Location	Cucurbita_argyrosperma_scaffold_075 : 106380 .. 107298 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAGAGGTGGAGTATCGCTGTTTTATTGGCGGCCTTTCTTGGTCAACATCTGACAGAGGTTTGAAAGATGCGTTTGAAAAGTTTGGCCATCTTCTCGAGGCCAAGGTATCTGATTTGTTTTTCTTGCGCTTACTCTTCTGTCATCCTTTTTTAGCTGATTATAGTCTTAATTCTTTCTGCTGGAATGTGAGTCCTCCAATTTTCTTACTCCGGATGGATATTGCTTGCTGCTCCTTGAATAATGATTCTTCATTCTTGTATTGATCCGTGTTTGTAGATAGAAATGTGAAAAATGTAAGGTTGGTGCTTGTTGCATTTGATAATTTGGATGATAGCTTAAGGTCTCTGTTCCTTAGGATTTTCCATAGTCACCTGTGATTTTGATAATGCATCATCCATTTCACAGGTAGTTGTTGACAAGTTTTCTGGACGTTCTCGTGGTTTTGGATTTGTCACTTTTGATGAGAAAAAAGCTATGGAAGAGGCAATCAAAGGCATGAATGGAATTGATTTAGATGGCCGGACTATTACAGTTGATAAGGCTCAGCCAAACCAAGGTTCAGGTAAAGATCATGATGGTGATCGTCCACGTGGTCGTGATCGAGGTCGGGATTTTGGAGGTGGACGTGGATCTAACGGTGGAGATTGCTTTAAATGCGGGAAGCCTGGACATTTTGCTAGGGAATGTCCCAGTGAAGGTGGTAGAGGAGGTAGATATGGAAGTAGGGATGACAGATATGGTAGTGGTGGTGGTGGCAGTGGTCGATATGGTCCAGATAGAAATGGAGATAGATCTGGTGGGCGCAATCGGGGTAGTACCGGTGATCGAGGAGGTTCAGGAAATGATCGATATAGTCGTGACCGCTCTGGGCCATATGAGCGACGTGGTTCTGGTGGTTCTCGTTCTGGATAG

mRNA sequence

ATGGCGGAAGAGGTGGAGTATCGCTGTTTTATTGGCGGCCTTTCTTGGTCAACATCTGACAGAGGTTTGAAAGATGCGTTTGAAAAGTTTGGCCATCTTCTCGAGGCCAAGGTAGTTGTTGACAAGTTTTCTGGACGTTCTCGTGGTTTTGGATTTGTCACTTTTGATGAGAAAAAAGCTATGGAAGAGGCAATCAAAGGCATGAATGGAATTGATTTAGATGGCCGGACTATTACAGTTGATAAGGCTCAGCCAAACCAAGGTTCAGGTAAAGATCATGATGGTGATCGTCCACGTGGTCGTGATCGAGGTCGGGATTTTGGAGGTGGACGTGGATCTAACGGTGGAGATTGCTTTAAATGCGGGAAGCCTGGACATTTTGCTAGGGAATGTCCCAGTGAAGGTGGTAGAGGAGGTAGATATGGAAGTAGGGATGACAGATATGGTAGTGGTGGTGGTGGCAGTGGTCGATATGGTCCAGATAGAAATGGAGATAGATCTGGTGGGCGCAATCGGGGTAGTACCGGTGATCGAGGAGGTTCAGGAAATGATCGATATAGTCGTGACCGCTCTGGGCCATATGAGCGACGTGGTTCTGGTGGTTCTCGTTCTGGATAG

Coding sequence (CDS)

ATGGCGGAAGAGGTGGAGTATCGCTGTTTTATTGGCGGCCTTTCTTGGTCAACATCTGACAGAGGTTTGAAAGATGCGTTTGAAAAGTTTGGCCATCTTCTCGAGGCCAAGGTAGTTGTTGACAAGTTTTCTGGACGTTCTCGTGGTTTTGGATTTGTCACTTTTGATGAGAAAAAAGCTATGGAAGAGGCAATCAAAGGCATGAATGGAATTGATTTAGATGGCCGGACTATTACAGTTGATAAGGCTCAGCCAAACCAAGGTTCAGGTAAAGATCATGATGGTGATCGTCCACGTGGTCGTGATCGAGGTCGGGATTTTGGAGGTGGACGTGGATCTAACGGTGGAGATTGCTTTAAATGCGGGAAGCCTGGACATTTTGCTAGGGAATGTCCCAGTGAAGGTGGTAGAGGAGGTAGATATGGAAGTAGGGATGACAGATATGGTAGTGGTGGTGGTGGCAGTGGTCGATATGGTCCAGATAGAAATGGAGATAGATCTGGTGGGCGCAATCGGGGTAGTACCGGTGATCGAGGAGGTTCAGGAAATGATCGATATAGTCGTGACCGCTCTGGGCCATATGAGCGACGTGGTTCTGGTGGTTCTCGTTCTGGATAG

Protein sequence

MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRGRDRGRDFGGGRGSNGGDCFKCGKPGHFARECPSEGGRGGRYGSRDDRYGSGGGGSGRYGPDRNGDRSGGRNRGSTGDRGGSGNDRYSRDRSGPYERRGSGGSRSG

Homology

[Close]

BLAST of Carg24575 vs. NCBI nr
Match: XP_022963831.1 (glycine-rich RNA-binding protein RZ1A-like [Cucurbita moschata])

HSP 1 Score: 266.5 bits (680), Expect = 7.3e-68
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGXXXXXXXXXXXXXXXXXXNGGDCFK 120
           MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGXXXXXXXXXXXXXXXXXXNGGDCFK
Sbjct: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGXXXXXXXXXXXXXXXXXXNGGDCFK 120

Query: 121 CGKPGHFARECPSEGGRGGRYGSRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           CGKPGHFARECPSEGGRGGRYGSRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 CGKPGHFARECPSEGGRGGRYGSRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXYERRGSGGSRSG 206
           XXXXXXXXXXXXXYERRGSGGSRSG
Sbjct: 181 XXXXXXXXXXXXXYERRGSGGSRSG 205

[Close]

BLAST of Carg24575 vs. NCBI nr
Match: XP_023553985.1 (glycine-rich RNA-binding protein RZ1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.4 bits (677), Expect = 1.6e-67
Identity = 204/205 (99.51%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGXXXXXXXXXXXXXXXXXXNGGDCFK 120
           MEEAIKGMNGIDLDGRTITVDKAQPNQGSG+DHDGXXXXXXXXXXXXXXXXXXNGGDCFK
Sbjct: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGRDHDGXXXXXXXXXXXXXXXXXXNGGDCFK 120

Query: 121 CGKPGHFARECPSEGGRGGRYGSRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           CGKPGHFARECPSEGGRGGRYGSRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 CGKPGHFARECPSEGGRGGRYGSRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXYERRGSGGSRSG 206
           XXXXXXXXXXXXXYERRGSGGSRSG
Sbjct: 181 XXXXXXXXXXXXXYERRGSGGSRSG 205

[Close]

BLAST of Carg24575 vs. NCBI nr
Match: XP_022967626.1 (glycine-rich RNA-binding protein RZ1A-like [Cucurbita maxima] >XP_022967627.1 glycine-rich RNA-binding protein RZ1A-like [Cucurbita maxima] >XP_022967628.1 glycine-rich RNA-binding protein RZ1A-like [Cucurbita maxima])

HSP 1 Score: 253.8 bits (647), Expect = 4.9e-64
Identity = 141/144 (97.92%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGXXXXXXXXXXXXXXXXXXNGGDCFK 120
           MEEAIKGMNGIDLDGRTITVDKAQPNQGSG+DHD XXXXXXXXXXXXXXXXXX GGDCFK
Sbjct: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGRDHDXXXXXXXXXXXXXXXXXXXXGGDCFK 120

Query: 121 CGKPGHFARECPSEGGRGGRYGSR 145
           CGKPGHFARECPSEGGRGGRYGSR
Sbjct: 121 CGKPGHFARECPSEGGRGGRYGSR 144

[Close]

BLAST of Carg24575 vs. NCBI nr
Match: XP_025013951.1 (glycine-rich RNA-binding protein RZ1A [Ricinus communis] >EEF38615.1 dc50, putative [Ricinus communis])

HSP 1 Score: 230.7 bits (587), Expect = 4.4e-57
Identity = 183/210 (87.14%), Postives = 192/210 (91.43%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M+EEVEYRCFIGGLSWSTSDRGLK+AFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MSEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHD-----GXXXXXXXXXXXXXXXXXXNG 120
           MEEAI+ MNG+DLDGRTITVDKAQP+QGSG++HD      XXXXXXXXXXXXXXXXXX G
Sbjct: 61  MEEAIEEMNGMDLDGRTITVDKAQPHQGSGREHDXXXXXXXXXXXXXXXXXXXXXXXXXG 120

Query: 121 GDCFKCGKPGHFARECPSEGGRGGRYGSRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           G+CFKCGKPGHFARECPSEG +G RYG RDXXXXXXXXXXXX      XXXXXXXXXXXX
Sbjct: 121 GECFKCGKPGHFARECPSEGAKGSRYGGRDXXXXXXXXXXXXRYGPDRXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXYERRGSGGSRSG 206
           XXXXXXXXXXXXXXXXXXYERRGSGG RSG
Sbjct: 181 XXXXXXXXXXXXXXXXXXYERRGSGGFRSG 210

[Close]

BLAST of Carg24575 vs. NCBI nr
Match: XP_008455237.1 (PREDICTED: glycine-rich RNA-binding protein RZ1A [Cucumis melo] >XP_016901750.1 PREDICTED: glycine-rich RNA-binding protein RZ1A [Cucumis melo])

HSP 1 Score: 228.4 bits (581), Expect = 2.2e-56
Identity = 121/143 (84.62%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MA+EVEYRCFIGGLSWSTSDRGLK+AFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDG-----XXXXXXXXXXXXXXXXXXNG 120
           M+EAIK MNG+DLDGR+ITVDKAQPNQGSG+DHDG     XXXXXXXXXX        N 
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPXXXXXXXXXXXXDFGGARGSNS 120

Query: 121 GDCFKCGKPGHFARECPSEGGRG 139
           GDCFKCGKPGHFARECPSEGGRG
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRG 143

[Close]

BLAST of Carg24575 vs. TAIR10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 204.1 bits (518), Expect = 8.0e-53
Identity = 115/149 (77.18%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M+E+ EYRCFIGGL+W+TSDRGL+DAFEK+GHL+EAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQ-GSGKD-HDGXXXXXXXXXXXXXXXXXXNGGDC 120
           M+EAI  MNG+DLDGRTITVDKAQP+Q G+G+D    XXXXXXXXXXXXXX     GGDC
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDXXXXXXXXXXXXXXXXXXSGGRGGGDC 120

Query: 121 FKCGKPGHFARECPSEGGR--GGRYGSRD 146
           FKCGKPGHFARECPSE  R  GGR+ S+D
Sbjct: 121 FKCGKPGHFARECPSESSRDGGGRFSSKD 149

[Close]

BLAST of Carg24575 vs. TAIR10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2)

HSP 1 Score: 119.4 bits (298), Expect = 2.6e-27
Identity = 52/87 (59.77%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 4  EVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEE 63
          +VEYRCF+GGL+W+T DR L+ AF ++G ++++K++ D+ +GRSRGFGFVTF ++KAM++
Sbjct: 5  DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 64 AIKGMNGIDLDGRTITVDKAQPNQGSG 91
          AI+GMNG DLDGR+ITV++AQ ++GSG
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQ-SRGSG 90

[Close]

BLAST of Carg24575 vs. TAIR10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 112.5 bits (280), Expect = 3.2e-25
Identity = 48/81 (59.26%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 4  EVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEE 63
          EVEYRCF+GGL+W+T+D  L+  F +FG ++++K++ D+ SGRSRGFGFVTF ++KAM +
Sbjct: 3  EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 64 AIKGMNGIDLDGRTITVDKAQ 85
          AI+ MNG +LDGR ITV++AQ
Sbjct: 63 AIEEMNGKELDGRVITVNEAQ 83

[Close]

BLAST of Carg24575 vs. TAIR10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 112.5 bits (280), Expect = 3.2e-25
Identity = 68/153 (44.44%), Postives = 99/153 (64.71%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MA +   R F+GGLS   +DR L+ AF +FG +L+ ++++++ +GRSRGFGF+TF +++A
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQG----------SGKDHDGXXXXXXXXXXXXXXX 120
           M+E+I+ M+G D   R I+V++A+P  G           G+D           XXXXXXX
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFXXXXXXX 120

Query: 121 XXXNGGDCFKCGKPGHFARECPSE-GGRGGRYG 143
           XX    +CFKCG+ GH+AR+CPS  GGRGG  G
Sbjct: 121 XXVGEDECFKCGRVGHWARDCPSAGGGRGGPVG 153

[Close]

BLAST of Carg24575 vs. TAIR10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 108.2 bits (269), Expect = 6.0e-24
Identity = 52/137 (37.96%), Postives = 84/137 (61.31%), Query Frame = 0


Query: 5   VEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEEA 64
           +E R F+GGLSW  ++R L+  F+++G + E +++V + +GR RGFGF+TF +++  ++A
Sbjct: 10  LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69

Query: 65  IKGMNGIDLDGRTITVDKAQPNQGSGKDHDGXXXXXXXXXXXXXXXXXXNGGDCFKCGKP 124
           IK M+G +L  + I+V+KA+P  G G+D D                      +CFKC +P
Sbjct: 70  IKHMHGRELGNKVISVNKAEPKVG-GEDVD-----QLKKGGGYSSRGKGTEDECFKCRRP 129

Query: 125 GHFARECPSEGGRGGRY 142
           GH+AR+CPS G    R+
Sbjct: 130 GHWARDCPSTGDDRERF 140

[Close]

BLAST of Carg24575 vs. Swiss-Prot
Match: sp|Q9LIN3|RZ1A_ARATH (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51
Identity = 115/149 (77.18%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M+E+ EYRCFIGGL+W+TSDRGL+DAFEK+GHL+EAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQ-GSGKD-HDGXXXXXXXXXXXXXXXXXXNGGDC 120
           M+EAI  MNG+DLDGRTITVDKAQP+Q G+G+D    XXXXXXXXXXXXXX     GGDC
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDXXXXXXXXXXXXXXXXXXSGGRGGGDC 120

Query: 121 FKCGKPGHFARECPSEGGR--GGRYGSRD 146
           FKCGKPGHFARECPSE  R  GGR+ S+D
Sbjct: 121 FKCGKPGHFARECPSESSRDGGGRFSSKD 149

[Close]

BLAST of Carg24575 vs. Swiss-Prot
Match: sp|P49310|GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.6e-26
Identity = 52/87 (59.77%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 4  EVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEE 63
          +VEYRCF+GGL+W+T DR L+ AF ++G +L++K++ D+ +GRSRGFGFVTF ++K+M++
Sbjct: 5  DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKD 64

Query: 64 AIKGMNGIDLDGRTITVDKAQPNQGSG 91
          AI+GMNG DLDGR+ITV++AQ ++GSG
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQ-SRGSG 90

[Close]

BLAST of Carg24575 vs. Swiss-Prot
Match: sp|Q03250|RBG7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.7e-26
Identity = 52/87 (59.77%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 4  EVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEE 63
          +VEYRCF+GGL+W+T DR L+ AF ++G ++++K++ D+ +GRSRGFGFVTF ++KAM++
Sbjct: 5  DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 64 AIKGMNGIDLDGRTITVDKAQPNQGSG 91
          AI+GMNG DLDGR+ITV++AQ ++GSG
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQ-SRGSG 90

[Close]

BLAST of Carg24575 vs. Swiss-Prot
Match: sp|P49311|GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-25
Identity = 49/81 (60.49%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 4  EVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEE 63
          +VEYRCF+GGL+W+T +R L+ AF +FG L+++K++ D+ +GRSRGFGFVTF ++K+M++
Sbjct: 5  DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKD 64

Query: 64 AIKGMNGIDLDGRTITVDKAQ 85
          AI+GMNG DLDGR+ITV++AQ
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQ 85

[Close]

BLAST of Carg24575 vs. Swiss-Prot
Match: sp|Q03878|GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.8e-25
Identity = 48/81 (59.26%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 4  EVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEE 63
          EVEYRCF+GGL+W+T+D  L+ AF +FG + ++K++ D+ +GRSRGFGFVTF ++K+M +
Sbjct: 3  EVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRD 62

Query: 64 AIKGMNGIDLDGRTITVDKAQ 85
          AI+GMNG +LDGR ITV++AQ
Sbjct: 63 AIEGMNGQELDGRNITVNEAQ 83

[Close]

BLAST of Carg24575 vs. TrEMBL
Match: tr|B9SCP7|B9SCP7_RICCO (Dc50, putative OS=Ricinus communis OX=3988 GN=RCOM_1375720 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.9e-57
Identity = 183/210 (87.14%), Postives = 192/210 (91.43%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M+EEVEYRCFIGGLSWSTSDRGLK+AFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MSEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHD-----GXXXXXXXXXXXXXXXXXXNG 120
           MEEAI+ MNG+DLDGRTITVDKAQP+QGSG++HD      XXXXXXXXXXXXXXXXXX G
Sbjct: 61  MEEAIEEMNGMDLDGRTITVDKAQPHQGSGREHDXXXXXXXXXXXXXXXXXXXXXXXXXG 120

Query: 121 GDCFKCGKPGHFARECPSEGGRGGRYGSRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           G+CFKCGKPGHFARECPSEG +G RYG RDXXXXXXXXXXXX      XXXXXXXXXXXX
Sbjct: 121 GECFKCGKPGHFARECPSEGAKGSRYGGRDXXXXXXXXXXXXRYGPDRXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXYERRGSGGSRSG 206
           XXXXXXXXXXXXXXXXXXYERRGSGG RSG
Sbjct: 181 XXXXXXXXXXXXXXXXXXYERRGSGGFRSG 210

[Close]

BLAST of Carg24575 vs. TrEMBL
Match: tr|A0A1S3C164|A0A1S3C164_CUCME (glycine-rich RNA-binding protein RZ1A OS=Cucumis melo OX=3656 GN=LOC103495449 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.4e-56
Identity = 121/143 (84.62%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MA+EVEYRCFIGGLSWSTSDRGLK+AFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDG-----XXXXXXXXXXXXXXXXXXNG 120
           M+EAIK MNG+DLDGR+ITVDKAQPNQGSG+DHDG     XXXXXXXXXX        N 
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPXXXXXXXXXXXXDFGGARGSNS 120

Query: 121 GDCFKCGKPGHFARECPSEGGRG 139
           GDCFKCGKPGHFARECPSEGGRG
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRG 143

[Close]

BLAST of Carg24575 vs. TrEMBL
Match: tr|A0A0A0K5W4|A0A0A0K5W4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G058610 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.6e-55
Identity = 119/141 (84.40%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MA+EVEYRCFIGGLSWSTSDRGLK+AFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDG-----XXXXXXXXXXXXXXXXXXNG 120
           M+EAIK MNG+DLDGR+ITVDKAQPNQGSG+DHDG     XXXXXXXXXX        N 
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPXXXXXXXXXXXXDFGGARGSNS 120

Query: 121 GDCFKCGKPGHFARECPSEGG 137
           GDCFKCGKPGHFARECPSEGG
Sbjct: 121 GDCFKCGKPGHFARECPSEGG 141

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BLAST of Carg24575 vs. TrEMBL
Match: tr|B9GF85|B9GF85_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G207100v3 PE=4 SV=2)

HSP 1 Score: 216.9 bits (551), Expect = 4.4e-53
Identity = 126/155 (81.29%), Postives = 134/155 (86.45%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M+EE+EYRCFIGGLSWSTSDRGLK+ FEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MSEELEYRCFIGGLSWSTSDRGLKETFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGK----------DHDGXXXXXXXXXXXXXXX 120
           ME+AI+GMNG+DLDGRTITVDKAQP QGS +              XXXXXXXXXXXXXXX
Sbjct: 61  MEDAIEGMNGMDLDGRTITVDKAQPQQGSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXNGGDCFKCGKPGHFARECPSEGGRGGRYGSRD 146
           XXX  G+CFKCGKPGHFARECPSEG RGGRYG RD
Sbjct: 121 XXXXXGECFKCGKPGHFARECPSEGARGGRYGGRD 155

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BLAST of Carg24575 vs. TrEMBL
Match: tr|A0A2P2KSH2|A0A2P2KSH2_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.3e-52
Identity = 123/149 (82.55%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M E++EYRCFIGGLSWSTSDRGLK+AFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEK+A
Sbjct: 1   MPEDMEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKEA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDH----DGXXXXXXXXXXXXXXXXXXNGG 120
           ME+AI+ MNG+DLDGR ITVDKAQP+QGS +DH      XXXXXXXXXXXXXXXXXX   
Sbjct: 61  MEDAIEAMNGMDLDGRNITVDKAQPHQGSSRDHXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 DCFKCGKPGHFARECPSEGGRGGRYGSRD 146
           +CFKCGKPGHFARECP EG RGGRYG RD
Sbjct: 121 ECFKCGKPGHFARECPGEGARGGRYGGRD 149

The following BLAST results are available for this feature:

BLAST of Carg24575 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963831.1	7.3e-68	100.00	glycine-rich RNA-binding protein RZ1A-like [Cucurbita moschata]	[more]
XP_023553985.1	1.6e-67	99.51	glycine-rich RNA-binding protein RZ1A-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967626.1	4.9e-64	97.92	glycine-rich RNA-binding protein RZ1A-like [Cucurbita maxima] >XP_022967627.1 gl...	[more]
XP_025013951.1	4.4e-57	87.14	glycine-rich RNA-binding protein RZ1A [Ricinus communis] >EEF38615.1 dc50, putat...	[more]
XP_008455237.1	2.2e-56	84.62	PREDICTED: glycine-rich RNA-binding protein RZ1A [Cucumis melo] >XP_016901750.1 ...	[more]

BLAST of Carg24575 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26420.1	8.0e-53	77.18	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT2G21660.1	2.6e-27	59.77	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	3.2e-25	59.26	cold, circadian rhythm, and RNA binding 1	[more]
AT5G04280.1	3.2e-25	44.44	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.1	6.0e-24	37.96	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]

BLAST of Carg24575 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LIN3\|RZ1A_ARATH	1.4e-51	77.18	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE...	[more]
sp\|P49310\|GRP1_SINAL	3.6e-26	59.77	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
sp\|Q03250\|RBG7_ARATH	4.7e-26	59.77	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
sp\|P49311\|GRP2_SINAL	1.4e-25	60.49	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
sp\|Q03878\|GRP1_DAUCA	8.8e-25	59.26	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]

BLAST of Carg24575 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|B9SCP7\|B9SCP7_RICCO	2.9e-57	87.14	Dc50, putative OS=Ricinus communis OX=3988 GN=RCOM_1375720 PE=4 SV=1	[more]
tr\|A0A1S3C164\|A0A1S3C164_CUCME	1.4e-56	84.62	glycine-rich RNA-binding protein RZ1A OS=Cucumis melo OX=3656 GN=LOC103495449 PE...	[more]
tr\|A0A0A0K5W4\|A0A0A0K5W4_CUCSA	1.6e-55	84.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G058610 PE=4 SV=1	[more]
tr\|B9GF85\|B9GF85_POPTR	4.4e-53	81.29	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G207100v3 PE=...	[more]
tr\|A0A2P2KSH2\|A0A2P2KSH2_RHIMU	1.3e-52	82.55	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036875	Znf_CCHC_sf
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR001878	Znf_CCHC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24575-RA	Carg24575-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 117..133 e-value: 3.5E-6 score: 36.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 118..133 e-value: 6.3E-8 score: 32.3
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 118..133 score: 11.565
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..81 e-value: 9.8E-27 score: 104.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..79 e-value: 2.4E-20 score: 72.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..85 score: 19.536
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 2..114 e-value: 1.9E-28 score: 101.2
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 115..152 e-value: 2.0E-8 score: 36.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..205
None	No IPR available	PANTHER	PTHR45429	FAMILY NOT NAMED	coord: 1..197
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 7..116
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 111..136

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24575	CmaCh11G016340	Cucurbita maxima (Rimu)	carcmaB0915
Carg24575	CmaCh19G002740	Cucurbita maxima (Rimu)	carcmaB0916
Carg24575	CmoCh11G014980	Cucurbita moschata (Rifu)	carcmoB0889
Carg24575	CmoCh19G002980	Cucurbita moschata (Rifu)	carcmoB0890
Carg24575	Cp4.1LG15g02460	Cucurbita pepo (Zucchini)	carcpeB0919
Carg24575	Cp4.1LG04g07010	Cucurbita pepo (Zucchini)	carcpeB0920

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24575	Silver-seed gourd	carcarB566
Carg24575	Cucumber (Gy14) v2	carcgybB0643
Carg24575	Wild cucumber (PI 183967)	carcpiB0675
Carg24575	Cucumber (Chinese Long) v2	carcuB0666
Carg24575	Cucumber (Chinese Long) v3	carcucB0677
Carg24575	Bottle gourd (USVL1VR-Ls)	carlsiB590
Carg24575	Melon (DHL92) v3.5.1	carmeB0644
Carg24575	Melon (DHL92) v3.6.1	carmedB0654
Carg24575	Watermelon (Charleston Gray)	carwcgB0628
Carg24575	Watermelon (97103) v1	carwmB0644
Carg24575	Watermelon (97103) v2	carwmbB0674
Carg24575	Wax gourd	carwgoB0761