CSPI07G05260 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G05260
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	RNA-binding protein
Location	Chr7 : 3934915 .. 3937727 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCCTCTTTGCCCTACACCCCAGTTTCAACCAACATCACCGCCACTTTGCCTTTTCCAGCTTTCAGGTTCTCTCCTGAGCGAATCCAATTCCTAAGGGTTAGGGCTTTCGTTCTTCACTAATTGTAAGCTCTATTCTGCTTCTAACCGCTTTTCTCTCTTTCTTTTATGCTTCTCTTTATTCAATTTCCTATTCAAGGCTCTCGAATTCGATTTCATATTTGCCCAATTCCGTATTCTGCTTAATTGTGGTTTTTTTTTTTTTTTTTTTTCTTTTTTATTCTTCGGATCCAGAAAGTTTTCAGTATTTTCTCCTGTTTTATATCTCTTCAATTTCAACGAATTTATTGCGGTCGGATTTCTTTTTCGAATTCTTCGCTATTCTCCCCTATTCGGGAAATTCAATTGATTTGACTACGGTTCTTCGATGAAGCTCTCATAATGGCTGACGAGGTGGAGTATCGCTGCTTTATTGGCGGCCTTTCTTGGTCAACATCTGACAGAGGTCTGAAAGAGGCGTTTGAAAAGTTTGGCCATCTTGTCGAGGCCAAGGTATCTGATTTGTTTTTTTTTTTTTTTTTCTTCTTAATCCTTTCTTCTGTGATGCGATTTTTCATTTTATATTTTATATTTTCATTTGGGTAGATATTGTTTGTCATTGATTCTTTCTATTTTGTCCTGTTGTTTTTTCTTTTTGTAATAAAAAAATAAAAGGGAAAATGTACTCCTTGAGTGAGAATGCTTCTATTGATTAATGTTTACAGATAGAGATGTGAGAAATGTAATGTTGGTACTTGTTGAATTTGATAATTTTTTATGATAGCGTGCTTAAGGAATTTCCATAGTCACCTGTTCGATTTTGACAATGCACCACCATTTCACAGGTAGTTGTCGACAAATTTTCTGGACGCTCCCGTGGTTTTGGATTTGTCACTTTTGATGAGAAAAAAGCTATGGATGAGGCAATCAAAGCTATGAATGGAATGGATTTAGATGGCCGGAGCATTACAGTTGATAAGGCTCAACCAAACCAAGGTTCTGGTAGAGATCATGATGGTGACCGTCCACGTGGTGGTCGTGATCATGATCGTGATCGGGGTCGTGATTTTGGTGGTGCACGTGGATCTAACAGTGGGGATTGCTTTAAATGTGGGAAACCTGGACATTTTGCTAGGGAATGTCCCAGTGAAGGTGGTAGAGGAGGTGGTAGGTATGGAGGGAGGGATGACAAATATAGTGGTGGCGGCGGTGGCGGTGGTCGATATGGTCCAGACCGAAATGGAGATAGATTCGGTGGGCGCAATAGGAGTTCTGGTGATCGAGGAGGTTCGGGAAGTGATCGATATAGCCGTGATCGCTCTGGTCCATATGAGCGACGTGGTTCTGGTGGTTTTCGTTCTGGATAGTATCATGACTTTCCTTGTAGGGTGTGTAACTCAACTCAACTTTACTGGTTCTTTGCGGCTGTCTTGTACTGATGACTTGTACTGTCTCCCCATTAAATGCAGCCAGCTTACATGGTGGGATCTTGCGGTTATGTCCTGCACAGTGTTAATGTTTCTGTCTACAGGTCGTCTCTCGTACAGTTCAGAGTTCTGAAGTGCAGAGCTCGACGTTAATGTTGAGATATTTGTGTTCCTATGTGATGAATTTGGTATCTTGGTACAGTGGTGTGGTGTCTAATGTGTTCTTGACATATTCATTGAAACCTGGTTTTATGATCTTTAAGTGCCCTTGTAGCTGCTGCATAACTTGTGACACACACACAGGGAATTTCAATAACTGCTGCACCATTTCATTTTGAAAAAATTTCTTTTAGAATACAACTAGACCTGGTTTTTGATATTGGATGGGTATTGACCATTGAGAGGACCTTGGCTTTTGATAAGCTGCAACTAGAGATTTGTGTCCTGACTTGGAAACTTTGAAGTGAAATCTCCTTTTCAGAACGTTGGTTCCTATTGTCTTATAAATTCCACATGAGTTAACAGGTAATTACTCTTCCTTCTATTGCCTTTGCTGTCCTAATATGGCATATCATCTATGTATGGTGTTATATTGATGTTGTGAACTTCTTGGCAGCATCCTTCCTTTTTATGGTCTTATTGGGTGCATAATACAGTTTCTTGTTAATTGGGCGCTTTAAACTTAAAAATTTACCAAAGCCTTTGGGATGCTCAAGCAATTTTGCAAATAAACTCACTTAATCTTCAAATACGTCCTGCTGGCTTATGGTTGAGGGGTATTTCATGTGCTAAAATGCTCGGCAAGTTGTGTTTGGACCATCTTTTGCACTTACGGTTCTATTTCCACTTTGTTCTTGTTGGGGGAGACTTTTGATGTGTTCGTTCTTGCCTGTTGTGGATCTCTACTTGTTCTTGGTTTTGTTTGCGGAGATTAATTCAGATGTGTGATTCTCTGTGCATCCAAGGTTTTCATTCAAAGTTTATTTGGAGTTTCTATAATGATCGTCCCTTTCATCATCTGGATCAGTTTGGTTTCAAATCCATTGATTGTTCTTTCTCTCCTCCAAATGTGATCAAAGGACCCGTTTCGCGTCTCCTGTAATTTTTACTCATATGTATCTCAATTTTTCATCCTTGTTTGCTGCCATGATGAATGTGTTACAACAATTAATGTTTAGCAATTATATTTTGAATTTCTTTGGCCTTTTTTTCTCTCCATTTCATGGTTTCTTTTCCATGGTCGTGTTCTTGTACCAATCCTTATCCTGGAAGGGATGGATTTTTTTCCTTCTACTTTTTGTGGCCCTAAACATTTTCAAGCTGTAAACTTTTTTTATGGTGATGTGCA

mRNA sequence

ATGGCTGACGAGGTGGAGTATCGCTGCTTTATTGGCGGCCTTTCTTGGTCAACATCTGACAGAGGTCTGAAAGAGGCGTTTGAAAAGTTTGGCCATCTTGTCGAGGCCAAGGTAGTTGTCGACAAATTTTCTGGACGCTCCCGTGGTTTTGGATTTGTCACTTTTGATGAGAAAAAAGCTATGGATGAGGCAATCAAAGCTATGAATGGAATGGATTTAGATGGCCGGAGCATTACAGTTGATAAGGCTCAACCAAACCAAGGTTCTGGTAGAGATCATGATGGTGACCGTCCACGTGGTGGTCGTGATCATGATCGTGATCGGGGTCGTGATTTTGGTGGTGCACGTGGATCTAACAGTGGGGATTGCTTTAAATGTGGGAAACCTGGACATTTTGCTAGGGAATGTCCCAGTGAAGGTGGTAGAGGAGGTGGTAGGTATGGAGGGAGGGATGACAAATATAGTGGTGGCGGCGGTGGCGGTGGTCGATATGGTCCAGACCGAAATGGAGATAGATTCGGTGGGCGCAATAGGAGTTCTGGTGATCGAGGAGGTTCGGGAAGTGATCGATATAGCCGTGATCGCTCTGGTCCATATGAGCGACGTGGTTCTGGTGGTTTTCGTTCTGGATAG

Coding sequence (CDS)

ATGGCTGACGAGGTGGAGTATCGCTGCTTTATTGGCGGCCTTTCTTGGTCAACATCTGACAGAGGTCTGAAAGAGGCGTTTGAAAAGTTTGGCCATCTTGTCGAGGCCAAGGTAGTTGTCGACAAATTTTCTGGACGCTCCCGTGGTTTTGGATTTGTCACTTTTGATGAGAAAAAAGCTATGGATGAGGCAATCAAAGCTATGAATGGAATGGATTTAGATGGCCGGAGCATTACAGTTGATAAGGCTCAACCAAACCAAGGTTCTGGTAGAGATCATGATGGTGACCGTCCACGTGGTGGTCGTGATCATGATCGTGATCGGGGTCGTGATTTTGGTGGTGCACGTGGATCTAACAGTGGGGATTGCTTTAAATGTGGGAAACCTGGACATTTTGCTAGGGAATGTCCCAGTGAAGGTGGTAGAGGAGGTGGTAGGTATGGAGGGAGGGATGACAAATATAGTGGTGGCGGCGGTGGCGGTGGTCGATATGGTCCAGACCGAAATGGAGATAGATTCGGTGGGCGCAATAGGAGTTCTGGTGATCGAGGAGGTTCGGGAAGTGATCGATATAGCCGTGATCGCTCTGGTCCATATGAGCGACGTGGTTCTGGTGGTTTTCGTTCTGGATAG

Homology

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BLAST of CSPI07G05260 vs. Swiss-Prot
Match: RZ1A_ARATH (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.8e-57
Identity = 143/228 (62.72%), Postives = 164/228 (71.93%), Query Frame = 1


Query: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M+++ EYRCFIGGL+W+TSDRGL++AFEK+GHLVEAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQ-GSGRDHDGDRPRGGRDHDRDRGRDFGGARGSN 120
           MDEAI AMNGMDLDGR+ITVDKAQP+Q G+GRD+DGDR R  R +DRDR R  GG  G  
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGR-DRGYDRDRSRPSGGRGG-- 120

Query: 121 SGDCFKCGKPGHFARECPSEGGR-GGGRYGGRDDKYSGG----GGGGGRYG--PDRNG-- 180
            GDCFKCGKPGHFARECPSE  R GGGR+  +DD+YS      G    RYG   DR G  
Sbjct: 121 -GDCFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAKEDRYGAK 180

Query: 181 --------DRFGGRNRSSGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 211
                   DR+  ++   G R G GS RY  DRSG    R  G  R G
Sbjct: 181 DDRYSSKDDRYSSKDDRYGSRDGGGS-RYGPDRSG---ERAGGRSRDG 220

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BLAST of CSPI07G05260 vs. Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.2e-26
Identity = 86/179 (48.04%), Postives = 108/179 (60.34%), Query Frame = 1


Query: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MAD VEYRCF+GGL W+T D+ L+ AF K+G ++++K++ D+ +GRSRGFGFVTF   +A
Sbjct: 1   MAD-VEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120
           M +AI+AMNG DLDGR+ITV++AQ      R  DG    GG       G  +GG R    
Sbjct: 61  MRQAIEAMNGQDLDGRNITVNEAQ-----SRRSDGGGGFGG------GGGGYGGQRREGG 120

Query: 121 GDCFKCGKPGHFARECPSEGGR--GGGRYGGRDDKYSGGGGGGGRYGPDRNGDRFGGRN 178
           G  +  G  G+        GGR  GGG YG RD    G GGGGG YG  R G   GG N
Sbjct: 121 GGGYGGGGGGY-------GGGRSGGGGGYGSRDGGGGGYGGGGGGYGGSRGGS--GGGN 158

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BLAST of CSPI07G05260 vs. Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.1e-26
Identity = 85/189 (44.97%), Postives = 113/189 (59.79%), Query Frame = 1


Query: 4   EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 63
           +VEYRCF+GGL+W+T DR L+ AF ++G ++++K++ D+ +GRSRGFGFVTF ++K+M +
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKD 64

Query: 64  AIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNSGDC 123
           AI+ MNG DLDGRSITV++AQ ++GSG         GG           GG RG   G  
Sbjct: 65  AIEGMNGQDLDGRSITVNEAQ-SRGSG---------GG-----------GGGRGGGGG-- 124

Query: 124 FKCGKPGHFARECPSEGGRGGGRYGGRDDKYSGGGG-----GGGRYGPDRNGDRFGGRNR 183
           ++ G  G +       GG GG   GGR+  YSGGGG     GGG  G    G R GG   
Sbjct: 125 YRSGGGGGYG------GGGGGYGGGGREGGYSGGGGGYSSRGGGGGGYGGGGRRDGGEGG 164

Query: 184 SSGDRGGSG 188
             G  GG G
Sbjct: 185 GYGGSGGGG 164

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BLAST of CSPI07G05260 vs. Swiss-Prot
Match: RBG7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-25
Identity = 86/186 (46.24%), Postives = 112/186 (60.22%), Query Frame = 1


Query: 4   EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 63
           +VEYRCF+GGL+W+T DR L+ AF ++G ++++K++ D+ +GRSRGFGFVTF ++KAM +
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 64  AIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNSGDC 123
           AI+ MNG DLDGRSITV++AQ ++GSG    G R  GG  +    G  + G  GS  G  
Sbjct: 65  AIEGMNGQDLDGRSITVNEAQ-SRGSG-GGGGHRGGGGGGYRSGGGGGYSGGGGSYGGG- 124

Query: 124 FKCGKPGHFARECPSEGGR--GGGRYGGRDDKYSGGGGGGGRYGPDRNGDRFGGRNRSSG 183
                           GGR  GGG Y G    YS  GGGGG YG    G R GG     G
Sbjct: 125 ----------------GGRREGGGGYSGGGGGYSSRGGGGGSYG---GGRREGGGGYGGG 168

Query: 184 DRGGSG 188
           + GG G
Sbjct: 185 EGGGYG 168

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BLAST of CSPI07G05260 vs. Swiss-Prot
Match: RBG8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-25
Identity = 83/187 (44.39%), Postives = 109/187 (58.29%), Query Frame = 1


Query: 4   EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 63
           EVEYRCF+GGL+W+T+D  L+  F +FG ++++K++ D+ SGRSRGFGFVTF ++KAM +
Sbjct: 3   EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 64  AIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNSGDC 123
           AI+ MNG +LDGR ITV++AQ ++GSG         GG           GG RG + G  
Sbjct: 63  AIEEMNGKELDGRVITVNEAQ-SRGSG---------GG-----------GGGRGGSGGGY 122

Query: 124 FKCGKPGHFARECPSEGGRGGGRYGGRDDKYSGGGGGGGR---YGPDRNGDRFGGRNRSS 183
              G  G+         G GGG Y  R   Y  GGGGGGR    G  R G  +GG +  S
Sbjct: 123 RSGGGGGYSGGGGGGYSGGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGS 168

Query: 184 GDRGGSG 188
              GG G
Sbjct: 183 YGGGGGG 168

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BLAST of CSPI07G05260 vs. TrEMBL
Match: A0A0A0K5W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G058610 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 2.8e-110
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 1


Query: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120

Query: 121 GDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYS-GGGGGGGRYGPDRNGDRFGGRNRS 180
           GDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYS GGGGGGGRYGPDRNGDRFGGRNRS
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYSGGGGGGGGRYGPDRNGDRFGGRNRS 180

Query: 181 SGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 211
           SGDRGGSGSDRYSRDRSGPYERRGSGGFRSG
Sbjct: 181 SGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 211

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BLAST of CSPI07G05260 vs. TrEMBL
Match: A0A067KMU6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06000 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.4e-88
Identity = 176/212 (83.02%), Postives = 192/212 (90.57%), Query Frame = 1


Query: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M++EVEYRCFIGGLSWSTSDRGLKEAFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MSEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLIEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGAR--GS 120
           M+EAI+AMNGMDLDGR+ITVDKAQP+QGSGRDHDGDR RG    DRD+ RD GG R  G 
Sbjct: 61  MEEAIEAMNGMDLDGRTITVDKAQPHQGSGRDHDGDRNRG---RDRDQNRDHGGRRPSGG 120

Query: 121 NSGDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYSGGGGGGGRYGPDRNGDRFGGRNR 180
             G+CFKCGKPGHFARECPSEG R GGRYGGR+++YS  GGGGGRYGPDRNGDRFGGRNR
Sbjct: 121 GGGECFKCGKPGHFARECPSEGAR-GGRYGGREERYS--GGGGGRYGPDRNGDRFGGRNR 180

Query: 181 SSGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 211
            +G RGG G+DRY+RDR+GPYERRGSGGFRSG
Sbjct: 181 DAGSRGGPGTDRYNRDRTGPYERRGSGGFRSG 206

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BLAST of CSPI07G05260 vs. TrEMBL
Match: B9SCP7_RICCO (Dc50, putative OS=Ricinus communis GN=RCOM_1375720 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 2.6e-87
Identity = 176/212 (83.02%), Postives = 192/212 (90.57%), Query Frame = 1


Query: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M++EVEYRCFIGGLSWSTSDRGLKEAFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MSEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120
           M+EAI+ MNGMDLDGR+ITVDKAQP+QGSGR+HDGDR R  R  DRD+ RD GG R S  
Sbjct: 61  MEEAIEEMNGMDLDGRTITVDKAQPHQGSGREHDGDRNRD-RGRDRDQNRDHGGRRPSGG 120

Query: 121 -GDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYS-GGGGGGGRYGPDRNGDRFGGRNR 180
            G+CFKCGKPGHFARECPSEG + G RYGGRDD+YS GGGGGGGRYGPDRNGDRFGGRN+
Sbjct: 121 GGECFKCGKPGHFARECPSEGAK-GSRYGGRDDRYSGGGGGGGGRYGPDRNGDRFGGRNK 180

Query: 181 SSGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 211
            +G RGG G+DRY+RDRSGPYERRGSGGFRSG
Sbjct: 181 DAGSRGGPGTDRYNRDRSGPYERRGSGGFRSG 210

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BLAST of CSPI07G05260 vs. TrEMBL
Match: B9GF85_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s21460g PE=4 SV=2)

HSP 1 Score: 323.9 bits (829), Expect = 1.4e-85
Identity = 175/217 (80.65%), Postives = 188/217 (86.64%), Query Frame = 1


Query: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M++E+EYRCFIGGLSWSTSDRGLKE FEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MSEELEYRCFIGGLSWSTSDRGLKETFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRG-----GRDHDRDRGRDFGGA 120
           M++AI+ MNGMDLDGR+ITVDKAQP QGS RD DGDR R       R HDRDR RD+GG 
Sbjct: 61  MEDAIEGMNGMDLDGRTITVDKAQPQQGSSRDLDGDRSRDRDRDRDRGHDRDRNRDYGGG 120

Query: 121 RGSNSGDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYSGGGG--GGGRYGPDRNGDRF 180
           RGSNSG+CFKCGKPGHFARECPSEG R GGRYGGRD++YSGGGG  GG RYGPDRNGDR 
Sbjct: 121 RGSNSGECFKCGKPGHFARECPSEGAR-GGRYGGRDERYSGGGGSSGGSRYGPDRNGDRS 180

Query: 181 GGRNRSSGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 211
           GGRNR  G RGG G DRY+RDRSGPYERR S GFRSG
Sbjct: 181 GGRNRDGGSRGGPGGDRYNRDRSGPYERRTS-GFRSG 215

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BLAST of CSPI07G05260 vs. TrEMBL
Match: F6HW88_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0166g00180 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 2.0e-84
Identity = 169/207 (81.64%), Postives = 185/207 (89.37%), Query Frame = 1


Query: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M++  EYRCFIGGLSWSTSDR LKEAFEKFGHLVEAKVVVDKFSGRSRGFGFV+FD+K+A
Sbjct: 79  MSEHEEYRCFIGGLSWSTSDRSLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVSFDDKQA 138

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRG-GRD--HDRDRGRDFGGARG 120
           M++AIK M+GMDLDGRSITVDKAQPNQGSGRD DGDR R  GRD  +DRDR RD+GG RG
Sbjct: 139 MEDAIKEMHGMDLDGRSITVDKAQPNQGSGRDRDGDRDRDRGRDRYNDRDRNRDYGGGRG 198

Query: 121 SNSGDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYSGGGGG--GGRYGPDRNGDRFGG 180
           SN G+CFKCGKPGHFARECPS  G  GGRYGGRDDKY GGGGG  GGRYGPDRNGDR+GG
Sbjct: 199 SNGGECFKCGKPGHFARECPSSEGARGGRYGGRDDKYGGGGGGGSGGRYGPDRNGDRYGG 258

Query: 181 RNRSSGDRGGSGSDRYSRDRSGPYERR 203
           R++ +G RGGSG+DRYSRDRSGPYERR
Sbjct: 259 RSKDAGSRGGSGNDRYSRDRSGPYERR 285

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BLAST of CSPI07G05260 vs. TAIR10
Match: AT3G26420.1 (AT3G26420.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 223.8 bits (569), Expect = 1.0e-58
Identity = 143/228 (62.72%), Postives = 164/228 (71.93%), Query Frame = 1


Query: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M+++ EYRCFIGGL+W+TSDRGL++AFEK+GHLVEAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQ-GSGRDHDGDRPRGGRDHDRDRGRDFGGARGSN 120
           MDEAI AMNGMDLDGR+ITVDKAQP+Q G+GRD+DGDR R  R +DRDR R  GG  G  
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGR-DRGYDRDRSRPSGGRGG-- 120

Query: 121 SGDCFKCGKPGHFARECPSEGGR-GGGRYGGRDDKYSGG----GGGGGRYG--PDRNG-- 180
            GDCFKCGKPGHFARECPSE  R GGGR+  +DD+YS      G    RYG   DR G  
Sbjct: 121 -GDCFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAKEDRYGAK 180

Query: 181 --------DRFGGRNRSSGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 211
                   DR+  ++   G R G GS RY  DRSG    R  G  R G
Sbjct: 181 DDRYSSKDDRYSSKDDRYGSRDGGGS-RYGPDRSG---ERAGGRSRDG 220

[Close]

BLAST of CSPI07G05260 vs. TAIR10
Match: AT2G21660.1 (AT2G21660.1 cold, circadian rhythm, and rna binding 2)

HSP 1 Score: 118.2 bits (295), Expect = 6.0e-27
Identity = 86/186 (46.24%), Postives = 112/186 (60.22%), Query Frame = 1


Query: 4   EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 63
           +VEYRCF+GGL+W+T DR L+ AF ++G ++++K++ D+ +GRSRGFGFVTF ++KAM +
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 64  AIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNSGDC 123
           AI+ MNG DLDGRSITV++AQ ++GSG    G R  GG  +    G  + G  GS  G  
Sbjct: 65  AIEGMNGQDLDGRSITVNEAQ-SRGSG-GGGGHRGGGGGGYRSGGGGGYSGGGGSYGGG- 124

Query: 124 FKCGKPGHFARECPSEGGR--GGGRYGGRDDKYSGGGGGGGRYGPDRNGDRFGGRNRSSG 183
                           GGR  GGG Y G    YS  GGGGG YG    G R GG     G
Sbjct: 125 ----------------GGRREGGGGYSGGGGGYSSRGGGGGSYG---GGRREGGGGYGGG 168

Query: 184 DRGGSG 188
           + GG G
Sbjct: 185 EGGGYG 168

[Close]

BLAST of CSPI07G05260 vs. TAIR10
Match: AT4G39260.1 (AT4G39260.1 cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 116.3 bits (290), Expect = 2.3e-26
Identity = 83/187 (44.39%), Postives = 109/187 (58.29%), Query Frame = 1


Query: 4   EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 63
           EVEYRCF+GGL+W+T+D  L+  F +FG ++++K++ D+ SGRSRGFGFVTF ++KAM +
Sbjct: 3   EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 64  AIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNSGDC 123
           AI+ MNG +LDGR ITV++AQ ++GSG         GG           GG RG + G  
Sbjct: 63  AIEEMNGKELDGRVITVNEAQ-SRGSG---------GG-----------GGGRGGSGGGY 122

Query: 124 FKCGKPGHFARECPSEGGRGGGRYGGRDDKYSGGGGGGGR---YGPDRNGDRFGGRNRSS 183
              G  G+         G GGG Y  R   Y  GGGGGGR    G  R G  +GG +  S
Sbjct: 123 RSGGGGGYSGGGGGGYSGGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGS 168

Query: 184 GDRGGSG 188
              GG G
Sbjct: 183 YGGGGGG 168

[Close]

BLAST of CSPI07G05260 vs. TAIR10
Match: AT5G04280.1 (AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-25
Identity = 82/201 (40.80%), Postives = 119/201 (59.20%), Query Frame = 1


Query: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MA +   R F+GGLS   +DR L+ AF +FG +++ ++++++ +GRSRGFGF+TF +++A
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRD-RGR-DFGGARGS 120
           MDE+I+ M+G D   R I+V++A+P  G   D +    RGGRD      G+  FGG  G 
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRD-DGESHGSRGGRDSGYSIAGKGSFGGGGGG 120

Query: 121 ----NSGDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYSGGGGGGGRYGPDRNGDRFG 180
                  +CFKCG+ GH+AR+CPS GG  GG  GG   + S  GG  GR     + DR+ 
Sbjct: 121 GGRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYV 180

Query: 181 GRNRSSGDRGGSGSDRYSRDR 196
            R R   DR    +   +RDR
Sbjct: 181 DRERYIDDRYDGAARYGARDR 200

[Close]

BLAST of CSPI07G05260 vs. TAIR10
Match: AT1G60650.1 (AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 87.8 bits (216), Expect = 8.6e-18
Identity = 83/224 (37.05%), Postives = 119/224 (53.12%), Query Frame = 1


Query: 5   VEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDEA 64
           +E R F+GGLSW  ++R L+  F+++G + E +++V + +GR RGFGF+TF +++  D+A
Sbjct: 10  LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69

Query: 65  IKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNSGDCF 124
           IK M+G +L  + I+V+KA+P  G G D D    +GG    R +G +          +CF
Sbjct: 70  IKHMHGRELGNKVISVNKAEPKVG-GEDVD-QLKKGGGYSSRGKGTE---------DECF 129

Query: 125 KCGKPGHFARECPSEG-------------GRGG------GRYGGRD-DKYSGGGGGGGRY 184
           KC +PGH+AR+CPS G              R G       RYG RD ++         RY
Sbjct: 130 KCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRY 189

Query: 185 GPDRNGDRFGGRNRSSGDRGGSGSDRYSRDRSGPYERRGSGGFR 209
             D   DR GGR  S  DR  SG D+Y      P+ER    G R
Sbjct: 190 -MDGRRDRDGGR-YSYRDRFDSG-DKYEPRDHYPFERYAPPGDR 219

[Close]

BLAST of CSPI07G05260 vs. NCBI nr
Match: gi|449438165|ref|XP_004136860.1| (PREDICTED: glycine-rich RNA-binding protein RZ1A [Cucumis sativus])

HSP 1 Score: 406.0 bits (1042), Expect = 4.1e-110
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 1


Query: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120

Query: 121 GDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYS-GGGGGGGRYGPDRNGDRFGGRNRS 180
           GDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYS GGGGGGGRYGPDRNGDRFGGRNRS
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYSGGGGGGGGRYGPDRNGDRFGGRNRS 180

Query: 181 SGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 211
           SGDRGGSGSDRYSRDRSGPYERRGSGGFRSG
Sbjct: 181 SGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 211

[Close]

BLAST of CSPI07G05260 vs. NCBI nr
Match: gi|659110462|ref|XP_008455237.1| (PREDICTED: glycine-rich RNA-binding protein 10 [Cucumis melo])

HSP 1 Score: 396.4 bits (1017), Expect = 3.2e-107
Identity = 207/214 (96.73%), Postives = 208/214 (97.20%), Query Frame = 1


Query: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120

Query: 121 GDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYSGGGGGG----GRYGPDRNGDRFGGR 180
           GDCFKCGKPGHFARECPSEGGR GGRYGGRDDKY GGGGGG    GRYGPDRNGDRFGGR
Sbjct: 121 GDCFKCGKPGHFARECPSEGGR-GGRYGGRDDKYGGGGGGGGGGSGRYGPDRNGDRFGGR 180

Query: 181 NRSSGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 211
           NRS+GDRGGSGSDRYSRDRSGPYERRGSGGFRSG
Sbjct: 181 NRSTGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 213

[Close]

BLAST of CSPI07G05260 vs. NCBI nr
Match: gi|802600254|ref|XP_012072848.1| (PREDICTED: glycine-rich RNA-binding protein RZ1A [Jatropha curcas])

HSP 1 Score: 334.0 bits (855), Expect = 2.0e-88
Identity = 176/212 (83.02%), Postives = 192/212 (90.57%), Query Frame = 1


Query: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M++EVEYRCFIGGLSWSTSDRGLKEAFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MSEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLIEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGAR--GS 120
           M+EAI+AMNGMDLDGR+ITVDKAQP+QGSGRDHDGDR RG    DRD+ RD GG R  G 
Sbjct: 61  MEEAIEAMNGMDLDGRTITVDKAQPHQGSGRDHDGDRNRG---RDRDQNRDHGGRRPSGG 120

Query: 121 NSGDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYSGGGGGGGRYGPDRNGDRFGGRNR 180
             G+CFKCGKPGHFARECPSEG R GGRYGGR+++YS  GGGGGRYGPDRNGDRFGGRNR
Sbjct: 121 GGGECFKCGKPGHFARECPSEGAR-GGRYGGREERYS--GGGGGRYGPDRNGDRFGGRNR 180

Query: 181 SSGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 211
            +G RGG G+DRY+RDR+GPYERRGSGGFRSG
Sbjct: 181 DAGSRGGPGTDRYNRDRTGPYERRGSGGFRSG 206

[Close]

BLAST of CSPI07G05260 vs. NCBI nr
Match: gi|255565552|ref|XP_002523766.1| (PREDICTED: glycine-rich RNA-binding protein RZ1A [Ricinus communis])

HSP 1 Score: 329.7 bits (844), Expect = 3.7e-87
Identity = 176/212 (83.02%), Postives = 192/212 (90.57%), Query Frame = 1


Query: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M++EVEYRCFIGGLSWSTSDRGLKEAFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MSEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120
           M+EAI+ MNGMDLDGR+ITVDKAQP+QGSGR+HDGDR R  R  DRD+ RD GG R S  
Sbjct: 61  MEEAIEEMNGMDLDGRTITVDKAQPHQGSGREHDGDRNRD-RGRDRDQNRDHGGRRPSGG 120

Query: 121 -GDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYS-GGGGGGGRYGPDRNGDRFGGRNR 180
            G+CFKCGKPGHFARECPSEG + G RYGGRDD+YS GGGGGGGRYGPDRNGDRFGGRN+
Sbjct: 121 GGECFKCGKPGHFARECPSEGAK-GSRYGGRDDRYSGGGGGGGGRYGPDRNGDRFGGRNK 180

Query: 181 SSGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 211
            +G RGG G+DRY+RDRSGPYERRGSGGFRSG
Sbjct: 181 DAGSRGGPGTDRYNRDRSGPYERRGSGGFRSG 210

[Close]

BLAST of CSPI07G05260 vs. NCBI nr
Match: gi|566150184|ref|XP_002299678.2| (hypothetical protein POPTR_0001s21460g [Populus trichocarpa])

HSP 1 Score: 323.9 bits (829), Expect = 2.0e-85
Identity = 175/217 (80.65%), Postives = 188/217 (86.64%), Query Frame = 1


Query: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M++E+EYRCFIGGLSWSTSDRGLKE FEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MSEELEYRCFIGGLSWSTSDRGLKETFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRG-----GRDHDRDRGRDFGGA 120
           M++AI+ MNGMDLDGR+ITVDKAQP QGS RD DGDR R       R HDRDR RD+GG 
Sbjct: 61  MEDAIEGMNGMDLDGRTITVDKAQPQQGSSRDLDGDRSRDRDRDRDRGHDRDRNRDYGGG 120

Query: 121 RGSNSGDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYSGGGG--GGGRYGPDRNGDRF 180
           RGSNSG+CFKCGKPGHFARECPSEG R GGRYGGRD++YSGGGG  GG RYGPDRNGDR 
Sbjct: 121 RGSNSGECFKCGKPGHFARECPSEGAR-GGRYGGRDERYSGGGGSSGGSRYGPDRNGDRS 180

Query: 181 GGRNRSSGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 211
           GGRNR  G RGG G DRY+RDRSGPYERR S GFRSG
Sbjct: 181 GGRNRDGGSRGGPGGDRYNRDRSGPYERRTS-GFRSG 215

The following BLAST results are available for this feature:

BLAST of CSPI07G05260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RZ1A_ARATH	1.8e-57	62.72	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1	[more]
GRP_HORVU	6.2e-26	48.04	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1	[more]
GRP1_SINAL	8.1e-26	44.97	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1	[more]
RBG7_ARATH	1.1e-25	46.24	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1	[more]
RBG8_ARATH	4.0e-25	44.39	Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8 PE=1 SV=1	[more]

BLAST of CSPI07G05260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5W4_CUCSA	2.8e-110	99.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G058610 PE=4 SV=1	[more]
A0A067KMU6_JATCU	1.4e-88	83.02	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06000 PE=4 SV=1	[more]
B9SCP7_RICCO	2.6e-87	83.02	Dc50, putative OS=Ricinus communis GN=RCOM_1375720 PE=4 SV=1	[more]
B9GF85_POPTR	1.4e-85	80.65	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s21460g PE=4 SV=2	[more]
F6HW88_VITVI	2.0e-84	81.64	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0166g00180 PE=4 SV=...	[more]

BLAST of CSPI07G05260 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26420.1	1.0e-58	62.72	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc...	[more]
AT2G21660.1	6.0e-27	46.24	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	2.3e-26	44.39	cold, circadian rhythm, and RNA binding 1	[more]
AT5G04280.1	1.1e-25	40.80	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc...	[more]
AT1G60650.1	8.6e-18	37.05	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc...	[more]

BLAST of CSPI07G05260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438165\|ref\|XP_004136860.1\|	4.1e-110	99.53	PREDICTED: glycine-rich RNA-binding protein RZ1A [Cucumis sativus]	[more]
gi\|659110462\|ref\|XP_008455237.1\|	3.2e-107	96.73	PREDICTED: glycine-rich RNA-binding protein 10 [Cucumis melo]	[more]
gi\|802600254\|ref\|XP_012072848.1\|	2.0e-88	83.02	PREDICTED: glycine-rich RNA-binding protein RZ1A [Jatropha curcas]	[more]
gi\|255565552\|ref\|XP_002523766.1\|	3.7e-87	83.02	PREDICTED: glycine-rich RNA-binding protein RZ1A [Ricinus communis]	[more]
gi\|566150184\|ref\|XP_002299678.2\|	2.0e-85	80.65	hypothetical protein POPTR_0001s21460g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR001878	Znf_CCHC
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR001878	Znf_CCHC
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR001878	Znf_CCHC
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009409	response to cold
biological_process	GO:0009631	cold acclimation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003729	mRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G05260.3	CSPI07G05260.3	mRNA
CSPI07G05260.2	CSPI07G05260.2	mRNA
CSPI07G05260.1	CSPI07G05260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..78 score: 1.9
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..81 score: 3.2
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 7..85 score: 19
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 120..138 score: 6.
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 123..138 score: 5.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 122..138 score: 3.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 123..138 score: 11
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 105..142 score: 3.0
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 6..86 score: 2.3
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 7..116 score: 1.33
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 3..85 score: 4.3
None	No IPR available	PANTHER	PTHR24012:SF82	SUBFAMILY NOT NAMED	coord: 3..85 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G05260	Cla006362	Watermelon (97103) v1	cpiwmB577
CSPI07G05260	Csa7G058610	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G05260	MELO3C018668	Melon (DHL92) v3.5.1	cpimeB538
CSPI07G05260	ClCG09G014940	Watermelon (Charleston Gray)	cpiwcgB541
CSPI07G05260	Lsi03G007950	Bottle gourd (USVL1VR-Ls)	cpilsiB536
CSPI07G05260	MELO3C018668.2	Melon (DHL92) v3.6.1	cpimedB523
CSPI07G05260	Cla97C09G177120	Watermelon (97103) v2	cpiwmbB584
CSPI07G05260	Bhi05G000656	Wax gourd	cpiwgoB672
CSPI07G05260	Cucsa.345780	Cucumber (Gy14) v1	cgycpiB512
CSPI07G05260	CmaCh11G016340	Cucurbita maxima (Rimu)	cmacpiB143
CSPI07G05260	CmoCh11G014980	Cucurbita moschata (Rifu)	cmocpiB137
CSPI07G05260	Cp4.1LG04g07010	Cucurbita pepo (Zucchini)	cpecpiB697
CSPI07G05260	Cp4.1LG15g02460	Cucurbita pepo (Zucchini)	cpecpiB262
CSPI07G05260	CsGy7G004820	Cucumber (Gy14) v2	cgybcpiB332
CSPI07G05260	Carg23987	Silver-seed gourd	carcpiB0769

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G05260	Cucurbita maxima (Rimu)	cmacpiB538
CSPI07G05260	Cucurbita moschata (Rifu)	cmocpiB529
CSPI07G05260	Silver-seed gourd	carcpiB0675
CSPI07G05260	Cucumber (Chinese Long) v3	cpicucB415