Cp4.1LG04g03360 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g03360
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionWound-responsive family protein, putative
LocationCp4.1LG04 : 7334457 .. 7334735 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTACCTGAACAGAGTCGGAATGGCGGCGAGCGTGGCGGTGGCTCAAGGCCACACGGAGATCGGACACAAGTGGAAATCTGGACTCAAATCTCTTCGCCAAGGTCGGAAACTTTTGTCTTCCGGTGAAAATCCGGCGGATCTACGGCCGCTTTCGAGTTTGGTTGGATCGGAAGGTCCTGAAGCCGTCCAGAGCTTTGACGCCGCCGAGAGGATAGCGCAGAGCGAGGAATCGCTCCGGCGAGTCATGTACTTGAACTGTTGGGGCCAGGGTTGA

mRNA sequence

ATGAGTTACCTGAACAGAGTCGGAATGGCGGCGAGCGTGGCGGTGGCTCAAGGCCACACGGAGATCGGACACAAGTGGAAATCTGGACTCAAATCTCTTCGCCAAGGTCGGAAACTTTTGTCTTCCGGTGAAAATCCGGCGGATCTACGGCCGCTTTCGAGTTTGGTTGGATCGGAAGGTCCTGAAGCCGTCCAGAGCTTTGACGCCGCCGAGAGGATAGCGCAGAGCGAGGAATCGCTCCGGCGAGTCATGTACTTGAACTGTTGGGGCCAGGGTTGA

Coding sequence (CDS)

ATGAGTTACCTGAACAGAGTCGGAATGGCGGCGAGCGTGGCGGTGGCTCAAGGCCACACGGAGATCGGACACAAGTGGAAATCTGGACTCAAATCTCTTCGCCAAGGTCGGAAACTTTTGTCTTCCGGTGAAAATCCGGCGGATCTACGGCCGCTTTCGAGTTTGGTTGGATCGGAAGGTCCTGAAGCCGTCCAGAGCTTTGACGCCGCCGAGAGGATAGCGCAGAGCGAGGAATCGCTCCGGCGAGTCATGTACTTGAACTGTTGGGGCCAGGGTTGA

Protein sequence

MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRKLLSSGENPADLRPLSSLVGSEGPEAVQSFDAAERIAQSEESLRRVMYLNCWGQG
Homology
[Close]
BLAST of Cp4.1LG04g03360 vs. TrEMBL
Match: A0A0A0K6Z3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046690 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.4e-37
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1 

Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGR+LLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 93
            +V+S D  ERIAQSE+SLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]
BLAST of Cp4.1LG04g03360 vs. TrEMBL
Match: A0A0S3SHH3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G093200 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = 1 

Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ G+K K+ L S+   R  L SG   +DLRPLS +VGS+G
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGYKCKTALNSIHHNRSRLFSGGALSDLRPLSGVVGSDG 60

Query: 61 PEAVQ-SFDAAERIAQSEESLRRVMYLNCWGQG 93
            AV  S D  +R+ Q++ESLR+VMYL+CWGQG
Sbjct: 61 AGAVAGSSDVQKRVTQADESLRKVMYLSCWGQG 93

[Close]
BLAST of Cp4.1LG04g03360 vs. TrEMBL
Match: V7BXU5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G107800g PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-20
Identity = 55/93 (59.14%), Postives = 70/93 (75.27%), Query Frame = 1 

Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ G+K K+ L S+   R  L SG   +DLRPLS +VGS+G
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGYKCKTALNSIHHNRSRLFSGGALSDLRPLSGVVGSDG 60

Query: 61 PEAVQ-SFDAAERIAQSEESLRRVMYLNCWGQG 93
            AV  S D  +++ Q++ESLR+VMYL+CWGQG
Sbjct: 61 AGAVTGSSDVEKKVTQADESLRKVMYLSCWGQG 93

[Close]
BLAST of Cp4.1LG04g03360 vs. TrEMBL
Match: A0A151RLL3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_022629 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-19
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 1 

Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ GHK K+ L S+   R  L SG   +DLRPLS +VGS+ 
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGHKCKTALTSIHHNRSRLFSGGPLSDLRPLSGVVGSDV 60

Query: 61 PEAVQ-SFDAAERIAQSEESLRRVMYLNCWGQG 93
            AV  S D   R+ Q+++SLR+VMYL+CWGQG
Sbjct: 61 AGAVAGSSDVDNRVRQADDSLRKVMYLSCWGQG 93

[Close]
BLAST of Cp4.1LG04g03360 vs. TrEMBL
Match: A0A0B2P9R7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_037964 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.2e-19
Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 1 

Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT  GHK K+ L S+   R  L SG + +DLRPLS +VGS+ 
Sbjct: 1  MSYLNRVWMAATVAVAQGHTHPGHKCKTALTSIHHNRSRLFSGGSLSDLRPLSGVVGSDV 60

Query: 61 PEAVQ-SFDAAERIAQSEESLRRVMYLNCWGQG 93
            +V  S D   R+ Q+++SLR+VMYL+CWGQG
Sbjct: 61 AGSVAGSSDVENRVRQADDSLRKVMYLSCWGQG 93

[Close]
BLAST of Cp4.1LG04g03360 vs. TAIR10
Match: AT4G28240.1 (AT4G28240.1 Wound-responsive family protein)

HSP 1 Score: 67.0 bits (162), Expect = 6.9e-12
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 1 

Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRKLLSSGENPADLRPLSS--LVGS 60
          MSYLN+V MAAS    QG+ + G K KSGL S  + ++ LSS     DLRPL++  L G 
Sbjct: 1  MSYLNKVWMAASFVAVQGNADHGVKLKSGLTSAHRLQRRLSS-----DLRPLAAADLTGD 60

Query: 61 EGPEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 93
            P   +   ++   +  +ESLR+VMYLNCW QG
Sbjct: 61 SLPSEERRRTSS---STPDESLRQVMYLNCWAQG 86

[Close]
BLAST of Cp4.1LG04g03360 vs. NCBI nr
Match: gi|659110677|ref|XP_008455353.1| (PREDICTED: uncharacterized protein LOC103495540 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-37
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1 

Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGR+LLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 93
            +V+S D  ERIAQSE+SLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]
BLAST of Cp4.1LG04g03360 vs. NCBI nr
Match: gi|965605071|dbj|BAT92247.1| (hypothetical protein VIGAN_07093200 [Vigna angularis var. angularis])

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-20
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = 1 

Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ G+K K+ L S+   R  L SG   +DLRPLS +VGS+G
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGYKCKTALNSIHHNRSRLFSGGALSDLRPLSGVVGSDG 60

Query: 61 PEAVQ-SFDAAERIAQSEESLRRVMYLNCWGQG 93
            AV  S D  +R+ Q++ESLR+VMYL+CWGQG
Sbjct: 61 AGAVAGSSDVQKRVTQADESLRKVMYLSCWGQG 93

[Close]
BLAST of Cp4.1LG04g03360 vs. NCBI nr
Match: gi|593698858|ref|XP_007149894.1| (hypothetical protein PHAVU_005G107800g [Phaseolus vulgaris])

HSP 1 Score: 105.9 bits (263), Expect = 3.8e-20
Identity = 55/93 (59.14%), Postives = 70/93 (75.27%), Query Frame = 1 

Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ G+K K+ L S+   R  L SG   +DLRPLS +VGS+G
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGYKCKTALNSIHHNRSRLFSGGALSDLRPLSGVVGSDG 60

Query: 61 PEAVQ-SFDAAERIAQSEESLRRVMYLNCWGQG 93
            AV  S D  +++ Q++ESLR+VMYL+CWGQG
Sbjct: 61 AGAVTGSSDVEKKVTQADESLRKVMYLSCWGQG 93

[Close]
BLAST of Cp4.1LG04g03360 vs. NCBI nr
Match: gi|951021337|ref|XP_014512646.1| (PREDICTED: uncharacterized protein LOC106771222 [Vigna radiata var. radiata])

HSP 1 Score: 105.9 bits (263), Expect = 3.8e-20
Identity = 55/93 (59.14%), Postives = 70/93 (75.27%), Query Frame = 1 

Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ G+K K+ L S+   R  L SG   +DLRPLS +VG++G
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGYKCKTALNSIHHNRSRLFSGGALSDLRPLSGVVGTDG 60

Query: 61 PEAVQ-SFDAAERIAQSEESLRRVMYLNCWGQG 93
            AV  S D  +R+ Q++ESLR+VMYL+CWGQG
Sbjct: 61 AGAVAGSSDVEKRVTQADESLRKVMYLSCWGQG 93

[Close]
BLAST of Cp4.1LG04g03360 vs. NCBI nr
Match: gi|1012332018|gb|KYP43466.1| (hypothetical protein KK1_035112 [Cajanus cajan])

HSP 1 Score: 103.2 bits (256), Expect = 2.5e-19
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 1 

Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ GHK K+ L S+   R  L SG   +DLRPLS +VGS+ 
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGHKCKTALTSIHHNRSRLFSGGPLSDLRPLSGVVGSDV 60

Query: 61 PEAVQ-SFDAAERIAQSEESLRRVMYLNCWGQG 93
            AV  S D   R+ Q+++SLR+VMYL+CWGQG
Sbjct: 61 AGAVAGSSDVDNRVRQADDSLRKVMYLSCWGQG 93

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g03360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g03360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6Z3_CUCSA1.4e-3789.13Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046690 PE=4 SV=1[more]
A0A0S3SHH3_PHAAN1.2e-2060.22Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G093200 PE=... [more]
V7BXU5_PHAVU2.6e-2059.14Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G107800g PE=4 SV=1[more]
A0A151RLL3_CAJCA1.7e-1959.14Uncharacterized protein OS=Cajanus cajan GN=KK1_022629 PE=4 SV=1[more]
A0A0B2P9R7_GLYSO2.2e-1958.06Uncharacterized protein OS=Glycine soja GN=glysoja_037964 PE=4 SV=1[more]
BLAST of Cp4.1LG04g03360 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G28240.16.9e-1245.74 Wound-responsive family protein[more]
BLAST of Cp4.1LG04g03360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110677|ref|XP_008455353.1|2.0e-3789.13PREDICTED: uncharacterized protein LOC103495540 [Cucumis melo][more]
gi|965605071|dbj|BAT92247.1|1.7e-2060.22hypothetical protein VIGAN_07093200 [Vigna angularis var. angularis][more]
gi|593698858|ref|XP_007149894.1|3.8e-2059.14hypothetical protein PHAVU_005G107800g [Phaseolus vulgaris][more]
gi|951021337|ref|XP_014512646.1|3.8e-2059.14PREDICTED: uncharacterized protein LOC106771222 [Vigna radiata var. radiata][more]
gi|1012332018|gb|KYP43466.1|2.5e-1959.14hypothetical protein KK1_035112 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022251DUF3774_wound-induced
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g03360.1Cp4.1LG04g03360.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 9..91
score: 2.7
NoneNo IPR availablePANTHERPTHR33090FAMILY NOT NAMEDcoord: 1..92
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g03360Cucsa.147970Cucumber (Gy14) v1cgycpeB0395
Cp4.1LG04g03360CmaCh11G018570Cucurbita maxima (Rimu)cmacpeB148
Cp4.1LG04g03360CmaCh19G009630Cucurbita maxima (Rimu)cmacpeB537
Cp4.1LG04g03360CmoCh19G009960Cucurbita moschata (Rifu)cmocpeB492
Cp4.1LG04g03360Cla007726Watermelon (97103) v1cpewmB666
Cp4.1LG04g03360Cla013595Watermelon (97103) v1cpewmB668
Cp4.1LG04g03360Csa7G046690Cucumber (Chinese Long) v2cpecuB690
Cp4.1LG04g03360MELO3C018765Melon (DHL92) v3.5.1cpemeB609
Cp4.1LG04g03360ClCG02G017310Watermelon (Charleston Gray)cpewcgB592
Cp4.1LG04g03360ClCG02G001310Watermelon (Charleston Gray)cpewcgB596
Cp4.1LG04g03360CSPI07G04300Wild cucumber (PI 183967)cpecpiB692
Cp4.1LG04g03360Lsi10G008620Bottle gourd (USVL1VR-Ls)cpelsiB521
Cp4.1LG04g03360Lsi11G015170Bottle gourd (USVL1VR-Ls)cpelsiB526
Cp4.1LG04g03360MELO3C018765.2Melon (DHL92) v3.6.1cpemedB721
Cp4.1LG04g03360CsaV3_7G004130Cucumber (Chinese Long) v3cpecucB0863
Cp4.1LG04g03360Bhi10G000906Wax gourdcpewgoB0865
Cp4.1LG04g03360Bhi05G001575Wax gourdcpewgoB0844
Cp4.1LG04g03360CsGy7G003930Cucumber (Gy14) v2cgybcpeB964
Cp4.1LG04g03360Carg13562Silver-seed gourdcarcpeB0047
Cp4.1LG04g03360Carg19100Silver-seed gourdcarcpeB1015
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g03360Cp4.1LG15g07660Cucurbita pepo (Zucchini)cpecpeB267
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g03360Cucurbita pepo (Zucchini)cpecpeB056
Cp4.1LG04g03360Cucurbita pepo (Zucchini)cpecpeB492
Cp4.1LG04g03360Cucumber (Gy14) v1cgycpeB0329
Cp4.1LG04g03360Cucurbita maxima (Rimu)cmacpeB642
Cp4.1LG04g03360Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g03360Cucurbita moschata (Rifu)cmocpeB525
Cp4.1LG04g03360Cucurbita moschata (Rifu)cmocpeB592
Cp4.1LG04g03360Melon (DHL92) v3.6.1cpemedB773
Cp4.1LG04g03360Silver-seed gourdcarcpeB0217
Cp4.1LG04g03360Silver-seed gourdcarcpeB1223
Cp4.1LG04g03360Cucumber (Chinese Long) v3cpecucB0855