Cp4.1LG04g03350 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g03350
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG04 : 7344636 .. 7346706 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACTCTTCATCAAACGCCATTGCCGTAGTTTCACCTCTCAAAATCTAAAGAATTCGACACACCCACCAACAAAAGAGTCTCAAATTCTCCAATTTTGTGGCTCAGACCTACTCCACGATGCTCTACACACCCTAAACTCCCTCGATTCCTTCGATTCCACCACCAACAAATCCATTCTCTACGCTTCTCTCTTGCAAACCTGCACCAAGGTCGCTTCCTTCACCCATGGCCGTCAAATTCATGCCCATGTTCTTAAATCTGGCCTTGAAGCTGACCGGTTTGTTGGGAATAGCTTACTTTCTCTTTACTTTAAATTGGGTTCAGATTTCCGGCTGACTCGAAGAGTATTCGATGGTCTTTTTGTGAAGGATGTGGTGTCCTGGACGTCCATGATTACGAGCTATGTTCGAGAAGGTAAACCTGGTAATGCGATCGAATTGTTTTGGGATATGTTGGATTTAGGGATTGAGCCTAATGGGTTTACTTTATCGGCTGTGATCAAGGCGTGTTCTGAGATTGGGAATTTGGTTCTTGGTCGATGCTTTCATGGGTTAGTTGTAAGGCATGGATTCAATTCAAATCATGTCATTGTGAGTTCTTTGATAGACATGTACGGGAGAAACTTTGCTTCGAGCGATGCGCGCCAACTGTTCGATGAAATGCCTGAACCAGATGCAATATGTTGGACCTCTGTTATTTCAGCTCTTACAAGGAATGATTTGTATGAGGATGCATTGGGTTTCTTTTATTTGATGCTAAGAACTTATAGTTTGTCTCCTGATGGTTTTACATTTGGTTCTGTATTGACTGCCTGTGCTAATTTGGGGAGGTTGAGGCAAGGTGAAGAAGTTCATGCTAAGGTGATTGCGCATGGACTTGGTGGGAATGTGGTGGTTGAGAGTAGTCTGGTGGATATGTATGGGAAATGTGGAGCGGTTGAGAAGTCCCAACGCGTGTTCGATAGGATGTCGAAGAGGAACTCGGTTTCGTGGTCTGCATTGCTTGGAGTATATTGCCAAAATGGAGACTTTGAAAAGGTTATAAATATCTTTAGGGGAATGGAGAAGATCGACCTTTACAGTTTCGGAACGGTTATTCGTGCGTGTGCTGGGTTAGCAGCTGTAACTCAAGGGAAGGAGGTTCACTGTCAGTATGTAAGAAAGGGTGGATGGAGAGATGTCATTGTGGAATCAGCTCTAGTCGACTTATACGCGAAATGTGGTTGTATTGATTTTGCATATCGAATCTTTGAGCAGATGCCAACAAGAAACTTGATCACGTGGAACTCGATGATTCGTGGGTTCGCTCAGAACGGAAGAAGTGGGATTTCTATTGAGATATTTGAAGAGATGATTAAGGAAGGGATTAAGCCTGATTATATCAGTTTTATTGGTGTTCTTTTTGCTTGTAGTCATACAGGTTTGGTCGATCAAGGGCGACATTACTTCGTTCGAATGACCGAGGAATATGGAATCAAACCAGGAATCGAGCATTATAATTGTATGGTTGATCTTCTCGGCCGAGCTGGGCTGCTAGAAGAAGCTGAAAATTTGATCGAAAACGCAGACTTCAGAAACGATTCGTCTCTTTGGCAGGTTCTTCTAGGGGCTTGTACTACTTCTACAAACTCTGGTACTGCAGAACGCATAGCCAAGAAAATGATGGAGCTTGAACCTCAACACCATTTAAGCTATGTTCTCCTGGCTAACGTGTACAGAGCAGTAGGCCGATGGGACGACGCGTTGACGATCAGGAAGTTGATGAAAAGCCGACAGGTGAAGAAGGTGCCTGGTCAGAGCTGGATGTAGGGGGCAAAGCATCAAGGTTATGAGCCTCATATCAAACCCGAATTCAAGGCTGATGATGGCTTGGCATTGATTATCAAAATATGGGGTCAGCTATTGTTTTCATGCTCGTCCCAAGATGAAGAACAGCCATGAGAAGCCAGCCACTAAACATATCGAGAACGTACCGACCTGGTCGAAAAGGTTATTAGATGCTATTAACCGGGATTATCGAAAGTTCGTGAATTTTCCATGGAGACTATCAGTTGCAATTTTCAGTTAA

mRNA sequence

ATGAGACTCTTCATCAAACGCCATTGCCGTAGTTTCACCTCTCAAAATCTAAAGAATTCGACACACCCACCAACAAAAGAGTCTCAAATTCTCCAATTTTGTGGCTCAGACCTACTCCACGATGCTCTACACACCCTAAACTCCCTCGATTCCTTCGATTCCACCACCAACAAATCCATTCTCTACGCTTCTCTCTTGCAAACCTGCACCAAGGTCGCTTCCTTCACCCATGGCCGTCAAATTCATGCCCATGTTCTTAAATCTGGCCTTGAAGCTGACCGGTTTGTTGGGAATAGCTTACTTTCTCTTTACTTTAAATTGGGTTCAGATTTCCGGCTGACTCGAAGAGTATTCGATGGTCTTTTTGTGAAGGATGTGGTGTCCTGGACGTCCATGATTACGAGCTATGTTCGAGAAGGTAAACCTGGTAATGCGATCGAATTGTTTTGGGATATGTTGGATTTAGGGATTGAGCCTAATGGGTTTACTTTATCGGCTGTGATCAAGGCGTGTTCTGAGATTGGGAATTTGGTTCTTGGTCGATGCTTTCATGGGTTAGTTGTAAGGCATGGATTCAATTCAAATCATGTCATTGTGAGTTCTTTGATAGACATGTACGGGAGAAACTTTGCTTCGAGCGATGCGCGCCAACTGTTCGATGAAATGCCTGAACCAGATGCAATATGTTGGACCTCTGTTATTTCAGCTCTTACAAGGAATGATTTGTATGAGGATGCATTGGGTTTCTTTTATTTGATGCTAAGAACTTATAGTTTGTCTCCTGATGGTTTTACATTTGGTTCTGTATTGACTGCCTGTGCTAATTTGGGGAGGTTGAGGCAAGGTGAAGAAGTTCATGCTAAGGTGATTGCGCATGGACTTGGTGGGAATGTGGTGGTTGAGAGTAGTCTGGTGGATATGTATGGGAAATGTGGAGCGGTTGAGAAGTCCCAACGCGTGTTCGATAGGATGTCGAAGAGGAACTCGGTTTCGTGGTCTGCATTGCTTGGAGTATATTGCCAAAATGGAGACTTTGAAAAGGTTATAAATATCTTTAGGGGAATGGAGAAGATCGACCTTTACAGTTTCGGAACGGTTATTCGTGCGTGTGCTGGCTATTGTTTTCATGCTCGTCCCAAGATGAAGAACAGCCATGAGAAGCCAGCCACTAAACATATCGAGAACGTACCGACCTGGTCGAAAAGGTTATTAGATGCTATTAACCGGGATTATCGAAAGTTCGTGAATTTTCCATGGAGACTATCAGTTGCAATTTTCAGTTAA

Coding sequence (CDS)

ATGAGACTCTTCATCAAACGCCATTGCCGTAGTTTCACCTCTCAAAATCTAAAGAATTCGACACACCCACCAACAAAAGAGTCTCAAATTCTCCAATTTTGTGGCTCAGACCTACTCCACGATGCTCTACACACCCTAAACTCCCTCGATTCCTTCGATTCCACCACCAACAAATCCATTCTCTACGCTTCTCTCTTGCAAACCTGCACCAAGGTCGCTTCCTTCACCCATGGCCGTCAAATTCATGCCCATGTTCTTAAATCTGGCCTTGAAGCTGACCGGTTTGTTGGGAATAGCTTACTTTCTCTTTACTTTAAATTGGGTTCAGATTTCCGGCTGACTCGAAGAGTATTCGATGGTCTTTTTGTGAAGGATGTGGTGTCCTGGACGTCCATGATTACGAGCTATGTTCGAGAAGGTAAACCTGGTAATGCGATCGAATTGTTTTGGGATATGTTGGATTTAGGGATTGAGCCTAATGGGTTTACTTTATCGGCTGTGATCAAGGCGTGTTCTGAGATTGGGAATTTGGTTCTTGGTCGATGCTTTCATGGGTTAGTTGTAAGGCATGGATTCAATTCAAATCATGTCATTGTGAGTTCTTTGATAGACATGTACGGGAGAAACTTTGCTTCGAGCGATGCGCGCCAACTGTTCGATGAAATGCCTGAACCAGATGCAATATGTTGGACCTCTGTTATTTCAGCTCTTACAAGGAATGATTTGTATGAGGATGCATTGGGTTTCTTTTATTTGATGCTAAGAACTTATAGTTTGTCTCCTGATGGTTTTACATTTGGTTCTGTATTGACTGCCTGTGCTAATTTGGGGAGGTTGAGGCAAGGTGAAGAAGTTCATGCTAAGGTGATTGCGCATGGACTTGGTGGGAATGTGGTGGTTGAGAGTAGTCTGGTGGATATGTATGGGAAATGTGGAGCGGTTGAGAAGTCCCAACGCGTGTTCGATAGGATGTCGAAGAGGAACTCGGTTTCGTGGTCTGCATTGCTTGGAGTATATTGCCAAAATGGAGACTTTGAAAAGGTTATAAATATCTTTAGGGGAATGGAGAAGATCGACCTTTACAGTTTCGGAACGGTTATTCGTGCGTGTGCTGGCTATTGTTTTCATGCTCGTCCCAAGATGAAGAACAGCCATGAGAAGCCAGCCACTAAACATATCGAGAACGTACCGACCTGGTCGAAAAGGTTATTAGATGCTATTAACCGGGATTATCGAAAGTTCGTGAATTTTCCATGGAGACTATCAGTTGCAATTTTCAGTTAA

Protein sequence

MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSILYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDLYSFGTVIRACAGYCFHARPKMKNSHEKPATKHIENVPTWSKRLLDAINRDYRKFVNFPWRLSVAIFS
Homology
[Close]
BLAST of Cp4.1LG04g03350 vs. Swiss-Prot
Match: PPR8_ARATH (Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 2.0e-124
Identity = 222/372 (59.68%), Postives = 276/372 (74.19%), Query Frame = 1 

Query: 3   LFIKRHCRSFTSQNLKNS--THPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 62
           + +KRH     S  L  S  +  PTK+S+IL+ C    L +A+  LNS  S +       
Sbjct: 4   IILKRHFSQHASLCLTPSISSSAPTKQSRILELCKLGQLTEAIRILNSTHSSEIPATPK- 63

Query: 63  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 122
           LYASLLQTC KV SF HG Q HAHV+KSGLE DR VGNSLLSLYFKLG   R TRRVFDG
Sbjct: 64  LYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDG 123

Query: 123 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 182
            FVKD +SWTSM++ YV   +   A+E+F +M+  G++ N FTLS+ +KACSE+G + LG
Sbjct: 124 RFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLG 183

Query: 183 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 242
           RCFHG+V+ HGF  NH I S+L  +YG N    DAR++FDEMPEPD ICWT+V+SA ++N
Sbjct: 184 RCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKN 243

Query: 243 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 302
           DLYE+ALG FY M R   L PDG TFG+VLTAC NL RL+QG+E+H K+I +G+G NVVV
Sbjct: 244 DLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVV 303

Query: 303 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 362
           ESSL+DMYGKCG+V ++++VF+ MSK+NSVSWSALLG YCQNG+ EK I IFR ME+ DL
Sbjct: 304 ESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEKDL 363

Query: 363 YSFGTVIRACAG 373
           Y FGTV++ACAG
Sbjct: 364 YCFGTVLKACAG 374

[Close]
BLAST of Cp4.1LG04g03350 vs. Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.0e-51
Identity = 135/409 (33.01%), Postives = 214/409 (52.32%), Query Frame = 1 

Query: 27  ESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSILYASLLQTCTKVASFTHGRQIHAHVL 86
           E + L+F  +DLL     + N L+      ++   Y +LL+ CT       GR +HAH+L
Sbjct: 31  EDESLKFPSNDLLLRT--SSNDLEGSYIPADRRF-YNTLLKKCTVFKLLIQGRIVHAHIL 90

Query: 87  KSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFVKDVVSWTSMITSYVREGKPGNAI 146
           +S    D  +GN+LL++Y K GS     R+VF+ +  +D V+WT++I+ Y +  +P +A+
Sbjct: 91  QSIFRHDIVMGNTLLNMYAKCGS-LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDAL 150

Query: 147 ELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCFHGLVVRHGFNSNHVIVSSLIDMY 206
             F  ML  G  PN FTLS+VIKA +       G   HG  V+ GF+SN  + S+L+D+Y
Sbjct: 151 LFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLY 210

Query: 207 GRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLYEDALGFFYLMLRTYSLSPDGFTF 266
            R     DA+ +FD +   + + W ++I+   R    E AL  F  MLR     P  F++
Sbjct: 211 TRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRD-GFRPSHFSY 270

Query: 267 GSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESSLVDMYGKCGAVEKSQRVFDRMSK 326
            S+  AC++ G L QG+ VHA +I  G        ++L+DMY K G++  ++++FDR++K
Sbjct: 271 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 330

Query: 327 RNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL----YSFGTVIRACA-----GYCFHA 386
           R+ VSW++LL  Y Q+G  ++ +  F  M ++ +     SF +V+ AC+        +H 
Sbjct: 331 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 390

Query: 387 RPKMKNSHEKPATKHIENVPTWSKRLLDAINRDYRKFVNFPWRLSVAIF 427
              MK     P   H   V     R  D +NR  R     P   + AI+
Sbjct: 391 YELMKKDGIVPEAWHYVTVVDLLGRAGD-LNRALRFIEEMPIEPTAAIW 433

[Close]
BLAST of Cp4.1LG04g03350 vs. Swiss-Prot
Match: PP146_ARATH (Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.7e-51
Identity = 113/349 (32.38%), Postives = 192/349 (55.01%), Query Frame = 1 

Query: 28  SQILQFCGSDLLHDALHTLNSLDSFDSTTNKSILYASLLQTCTKVASFTHGRQIHAHVLK 87
           S I  +  +DL  + L   N +   ++       Y +L+  CTK+++   G+  H  ++K
Sbjct: 212 SMIAGYVKNDLCEEGLVLFNRMRE-NNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVK 271

Query: 88  SGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFVKDVVSWTSMITSYVREGKPGNAIE 147
           SG+E    +  SLL +Y K G D    RRVF+     D+V WT+MI  Y   G    A+ 
Sbjct: 272 SGIELSSCLVTSLLDMYVKCG-DISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALS 331

Query: 148 LFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCFHGLVVRHGFNSNHVIVSSLIDMYG 207
           LF  M  + I+PN  T+++V+  C  I NL LGR  HGL ++ G    +V  ++L+ MY 
Sbjct: 332 LFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNV-ANALVHMYA 391

Query: 208 RNFASSDARQLFDEMPEPDAICWTSVISALTRNDLYEDALGFFYLMLRTYSLSPDGFTFG 267
           + + + DA+ +F+   E D + W S+IS  ++N    +AL  F+ M  + S++P+G T  
Sbjct: 392 KCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRM-NSESVTPNGVTVA 451

Query: 268 SVLTACANLGRLRQGEEVHAKVIAHGL--GGNVVVESSLVDMYGKCGAVEKSQRVFDRMS 327
           S+ +ACA+LG L  G  +HA  +  G     +V V ++L+D Y KCG  + ++ +FD + 
Sbjct: 452 SLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIE 511

Query: 328 KRNSVSWSALLGVYCQNGDFEKVINIFRGM----EKIDLYSFGTVIRAC 371
           ++N+++WSA++G Y + GD    + +F  M    +K +  +F +++ AC
Sbjct: 512 EKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSAC 556

[Close]
BLAST of Cp4.1LG04g03350 vs. Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2)

HSP 1 Score: 202.6 bits (514), Expect = 8.6e-51
Identity = 116/349 (33.24%), Postives = 194/349 (55.59%), Query Frame = 1 

Query: 28  SQILQFCGSDLLHDALHTLNSLDSFDSTTNKSILYASLLQTCTKVASFTHGRQIHAHVLK 87
           + I  +C S    +AL   N L + DS T       SLL  CT+   F  G  IH++ +K
Sbjct: 221 AMISGYCQSGNAKEALTLSNGLRAMDSVT-----VVSLLSACTEAGDFNRGVTIHSYSIK 280

Query: 88  SGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFVKDVVSWTSMITSYVREGKPGNAIE 147
            GLE++ FV N L+ LY + G   R  ++VFD ++V+D++SW S+I +Y    +P  AI 
Sbjct: 281 HGLESELFVSNKLIDLYAEFGR-LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIS 340

Query: 148 LFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCFHGLVVRHG-FNSNHVIVSSLIDMY 207
           LF +M    I+P+  TL ++    S++G++   R   G  +R G F  +  I ++++ MY
Sbjct: 341 LFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMY 400

Query: 208 GRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLYEDALGFFYLMLRTYSLSPDGFTF 267
            +      AR +F+ +P  D I W ++IS   +N    +A+  + +M     ++ +  T+
Sbjct: 401 AKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTW 460

Query: 268 GSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESSLVDMYGKCGAVEKSQRVFDRMSK 327
            SVL AC+  G LRQG ++H +++ +GL  +V V +SL DMYGKCG +E +  +F ++ +
Sbjct: 461 VSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPR 520

Query: 328 RNSVSWSALLGVYCQNGDFEKVINIFRGM----EKIDLYSFGTVIRACA 372
            NSV W+ L+  +  +G  EK + +F+ M     K D  +F T++ AC+
Sbjct: 521 VNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACS 563

[Close]
BLAST of Cp4.1LG04g03350 vs. Swiss-Prot
Match: PP319_ARATH (Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.3e-50
Identity = 106/311 (34.08%), Postives = 176/311 (56.59%), Query Frame = 1 

Query: 64  SLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFV 123
           S+L+ C++  +   GRQ+H+ V+K  ++ D FVG SL+ +Y K G +    R+VFDG+  
Sbjct: 289 SILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCG-EISDCRKVFDGMSN 348

Query: 124 KDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCF 183
           ++ V+WTS+I ++ REG    AI LF  M    +  N  T+ ++++AC  +G L+LG+  
Sbjct: 349 RNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKEL 408

Query: 184 HGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLY 243
           H  ++++    N  I S+L+ +Y +   S DA  +  ++P  D + WT++IS  +     
Sbjct: 409 HAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHE 468

Query: 244 EDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESS 303
            +AL F   M++   + P+ FT+ S L ACAN   L  G  +H+    +    NV V S+
Sbjct: 469 SEALDFLKEMIQE-GVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSA 528

Query: 304 LVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGME----KID 363
           L+ MY KCG V ++ RVFD M ++N VSW A++  Y +NG   + + +   ME    ++D
Sbjct: 529 LIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVD 588

Query: 364 LYSFGTVIRAC 371
            Y F T++  C
Sbjct: 589 DYIFATILSTC 597

[Close]
BLAST of Cp4.1LG04g03350 vs. TrEMBL
Match: A0A0A0K5P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047230 PE=4 SV=1)

HSP 1 Score: 609.0 bits (1569), Expect = 4.5e-171
Identity = 299/373 (80.16%), Postives = 324/373 (86.86%), Query Frame = 1 

Query: 1   MRLFIKRHCRS-FTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKS 60
           M LF+KRHC S FTSQN K STHP  K SQILQFC S LL+DALH LNS+D +DS  NK 
Sbjct: 1   MMLFLKRHCSSSFTSQNFKYSTHPSIKLSQILQFCKSGLLNDALHLLNSIDLYDSRINKP 60

Query: 61  ILYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFD 120
           +LYASLLQTC KV SFT GRQ HAHV+KSGLE DRFVGNSLLSLYFKLGSD  LTRRVFD
Sbjct: 61  LLYASLLQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLGSDSLLTRRVFD 120

Query: 121 GLFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVL 180
           GLFVKDVVSW SMIT YVREGK G AIELFWDMLD GIEPNGFTLSAVIKACSEIGNLVL
Sbjct: 121 GLFVKDVVSWASMITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVL 180

Query: 181 GRCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTR 240
           G+CFHG+VVR GF+SN VI+SSLIDMYGRN  SSDARQLFDE+ EPD +CWT+VISA TR
Sbjct: 181 GKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTR 240

Query: 241 NDLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVV 300
           NDLYE+ALGFFYL  R + L PD +TFGSVLTAC NLGRLRQGEE+HAKVIA+G  GNVV
Sbjct: 241 NDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVV 300

Query: 301 VESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKID 360
            ESSLVDMYGKCGAVEKSQR+FDRMS RNSVSWSALL VYC NGD+EK +N+FR M+++D
Sbjct: 301 TESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKEVD 360

Query: 361 LYSFGTVIRACAG 373
           LYSFGTVIRACAG
Sbjct: 361 LYSFGTVIRACAG 373

[Close]
BLAST of Cp4.1LG04g03350 vs. TrEMBL
Match: M5XE21_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019108mg PE=4 SV=1)

HSP 1 Score: 556.6 bits (1433), Expect = 2.6e-155
Identity = 274/372 (73.66%), Postives = 313/372 (84.14%), Query Frame = 1 

Query: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 60
           M+L +KRHC S TS NL+++  P  K+SQIL+ C   LL DA+  LNS+DS + T  K I
Sbjct: 1   MKLVLKRHCSSLTSLNLQSTKIPSPKQSQILRLCKLGLLSDAIRVLNSIDSGEITL-KPI 60

Query: 61  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 120
           LYASLLQTCTK  SF HG QIHAHV+KSGLE DRFVGNSLLSLYFKL  +   TRRVFDG
Sbjct: 61  LYASLLQTCTKAVSFNHGLQIHAHVVKSGLETDRFVGNSLLSLYFKLVPNMSETRRVFDG 120

Query: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180
           LFVKDV+SWTSMIT YVR GKPGN+IE+F+DML  GIEPN FTLSAV+KACSEIG+L LG
Sbjct: 121 LFVKDVISWTSMITGYVRAGKPGNSIEVFYDMLKFGIEPNAFTLSAVVKACSEIGDLRLG 180

Query: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240
            CFHG+VVR GF SNHVI+S+LI+MYGRN+ S DAR LFDE+ EP AICWTS+ISALTR+
Sbjct: 181 LCFHGVVVRRGFVSNHVIISALINMYGRNYRSEDARLLFDELTEPGAICWTSIISALTRS 240

Query: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300
           DL+E+ALGFFYLM R + LSPDGFTFG+VL AC NLGRLRQG E+HAKVI +GL GNVVV
Sbjct: 241 DLFEEALGFFYLMHRYHGLSPDGFTFGTVLAACGNLGRLRQGREMHAKVITYGLCGNVVV 300

Query: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360
           ESSLVDMYGKCG+VE ++RVFDR+ K+NSVSWSALLGVYCQ GDFE VIN FR ME+ DL
Sbjct: 301 ESSLVDMYGKCGSVECARRVFDRIPKKNSVSWSALLGVYCQTGDFESVINHFREMEEADL 360

Query: 361 YSFGTVIRACAG 373
           YSFGTV+RACAG
Sbjct: 361 YSFGTVLRACAG 371

[Close]
BLAST of Cp4.1LG04g03350 vs. TrEMBL
Match: A0A061E2T1_THECC (Pentatricopeptide repeat (PPR-like) superfamily protein OS=Theobroma cacao GN=TCM_007980 PE=4 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 2.9e-146
Identity = 260/372 (69.89%), Postives = 301/372 (80.91%), Query Frame = 1 

Query: 4   FIKRHCRSFTSQNLK-NSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTN--KSI 63
           F KRH  SF S N    S  P  K SQIL FC S  L  A+H LN+L     TT+  K +
Sbjct: 7   FFKRHRCSFASFNPTFPSKTPSDKHSQILHFCKSAQLFPAIHLLNTLHFPSETTSSKKPL 66

Query: 64  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 123
           LYASLLQTCT V SF+HG Q HAHV+KSGL+ DRFVGNSLL+LYFKLG DF  TRRVFDG
Sbjct: 67  LYASLLQTCTNVQSFSHGLQFHAHVIKSGLQTDRFVGNSLLALYFKLGPDFTETRRVFDG 126

Query: 124 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 183
           LFVKDV+SWTSM++ Y++ GKP ++++LFW+ML  G+EPNGFTLS VIKACSE+G L LG
Sbjct: 127 LFVKDVISWTSMVSGYIKAGKPESSLQLFWEMLGFGVEPNGFTLSTVIKACSELGKLRLG 186

Query: 184 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 243
            CFHG+V++ GF SN VI S+LID YGRN+   +A ++FDE+PEPDAICWTSVISALTRN
Sbjct: 187 WCFHGVVIKRGFVSNRVISSALIDFYGRNWQLKEACEIFDELPEPDAICWTSVISALTRN 246

Query: 244 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 303
           DLYE+AL FFYLM R + LSPDGFTFG+VLTAC NLGRLRQG++VHAKVI  GL GNVVV
Sbjct: 247 DLYEEALRFFYLMHRNHGLSPDGFTFGTVLTACGNLGRLRQGKQVHAKVITCGLCGNVVV 306

Query: 304 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 363
           ESSL+DMYGKCG V++SQ VFDRMSK+NSVSWSALLGVYCQN D+E VI IFR M+K DL
Sbjct: 307 ESSLLDMYGKCGLVDESQCVFDRMSKKNSVSWSALLGVYCQNKDYESVIRIFREMDKTDL 366

Query: 364 YSFGTVIRACAG 373
           Y FGTV+RACAG
Sbjct: 367 YCFGTVLRACAG 378

[Close]
BLAST of Cp4.1LG04g03350 vs. TrEMBL
Match: A0A067JXD0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25836 PE=4 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 1.1e-145
Identity = 258/374 (68.98%), Postives = 302/374 (80.75%), Query Frame = 1 

Query: 1   MRLF--IKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNK 60
           M+LF  IKRHC S  S N   S +P TKE +I+Q+C S  L DALH LNSLDS     NK
Sbjct: 1   MKLFLSIKRHCSSLASLNHNTSQNPQTKEFRIIQYCKSGALFDALHILNSLDSA-KLCNK 60

Query: 61  SILYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVF 120
             LYASLLQTCTKV SF HG QIHAH++KSGLE DRF+GNSLL+LYFKLGS+F  TRR+F
Sbjct: 61  PFLYASLLQTCTKVVSFNHGLQIHAHLIKSGLETDRFIGNSLLALYFKLGSNFFETRRLF 120

Query: 121 DGLFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLV 180
           DGL+ +DV+SWTSM+T Y++ GKP NAIELF +MLD GI+PNGFTLSA IKA S++GNL 
Sbjct: 121 DGLYFRDVISWTSMVTGYIKVGKPKNAIELFLEMLDFGIDPNGFTLSAAIKASSDLGNLR 180

Query: 181 LGRCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALT 240
           LG+C HG+V+  GF+SN+VI S+LIDMYGRN+   DA +LFD++ EPDAI WTSVISA T
Sbjct: 181 LGKCIHGVVISQGFDSNYVISSALIDMYGRNYGLEDACRLFDDLLEPDAISWTSVISAFT 240

Query: 241 RNDLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNV 300
           RND+Y+ ALGFFYLM R   L+PD FTFG+VLTAC NL RL++G+EVHA+VI  G  GNV
Sbjct: 241 RNDMYDKALGFFYLMQRKLGLAPDEFTFGTVLTACGNLRRLKRGKEVHARVITSGFSGNV 300

Query: 301 VVESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKI 360
           VVESSLVDMYGKCG V +SQ VFDRMS +NSVSWSALLG YCQNGDFE VI IFR +E  
Sbjct: 301 VVESSLVDMYGKCGLVMESQHVFDRMSIKNSVSWSALLGGYCQNGDFESVIRIFREVESH 360

Query: 361 DLYSFGTVIRACAG 373
           DLYSFGTV+RAC+G
Sbjct: 361 DLYSFGTVLRACSG 373

[Close]
BLAST of Cp4.1LG04g03350 vs. TrEMBL
Match: B9RW53_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1176200 PE=4 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 1.3e-143
Identity = 258/373 (69.17%), Postives = 303/373 (81.23%), Query Frame = 1 

Query: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 60
           M LF KRHC S  S NLKN      KE +I+ FC S  L  AL  LNS+DS +  +NK  
Sbjct: 1   MNLF-KRHCSSLPSFNLKN------KEIKIIGFCKSGALLHALDILNSIDSRE-ISNKPF 60

Query: 61  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 120
           +YASLLQTCTKV SF HG QIHAHV+KSGLE DRFVGNSLL+LYFKL +DF  TRRVFDG
Sbjct: 61  IYASLLQTCTKVVSFNHGLQIHAHVVKSGLETDRFVGNSLLALYFKLSTDFFETRRVFDG 120

Query: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180
           L+ +DV+SWTSMIT YV+  KP  A++LFW+MLD+G++PN FTLSAVIKAC+++G L+LG
Sbjct: 121 LYFRDVISWTSMITGYVKGEKPKKALDLFWEMLDVGVDPNAFTLSAVIKACTDLGTLMLG 180

Query: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240
           +CFH +++  GF+SNHVI S+LID+YGRN+   DAR+LFDE+ EPDAICWTSVISA TRN
Sbjct: 181 KCFHCVIMIRGFHSNHVIGSALIDLYGRNYELDDARRLFDELLEPDAICWTSVISAYTRN 240

Query: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300
           D+Y+ ALGFFYLM R   L+PDGFTFG+VLTAC NL RL+QG+EVHAK+I  G  GNVVV
Sbjct: 241 DMYDKALGFFYLMQRKLGLAPDGFTFGTVLTACGNLRRLKQGKEVHAKLITSGFSGNVVV 300

Query: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGM-EKID 360
           ESSLVDMYGKCG V++SQRVFDRMS +NSVSWSALLG +CQNGDFE VI IFR M E  D
Sbjct: 301 ESSLVDMYGKCGLVDESQRVFDRMSVKNSVSWSALLGGFCQNGDFESVIRIFREMGEADD 360

Query: 361 LYSFGTVIRACAG 373
           LYSFGTV+RACAG
Sbjct: 361 LYSFGTVLRACAG 365

[Close]
BLAST of Cp4.1LG04g03350 vs. TAIR10
Match: AT1G03540.1 (AT1G03540.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 447.2 bits (1149), Expect = 1.1e-125
Identity = 222/372 (59.68%), Postives = 276/372 (74.19%), Query Frame = 1 

Query: 3   LFIKRHCRSFTSQNLKNS--THPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 62
           + +KRH     S  L  S  +  PTK+S+IL+ C    L +A+  LNS  S +       
Sbjct: 4   IILKRHFSQHASLCLTPSISSSAPTKQSRILELCKLGQLTEAIRILNSTHSSEIPATPK- 63

Query: 63  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 122
           LYASLLQTC KV SF HG Q HAHV+KSGLE DR VGNSLLSLYFKLG   R TRRVFDG
Sbjct: 64  LYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDG 123

Query: 123 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 182
            FVKD +SWTSM++ YV   +   A+E+F +M+  G++ N FTLS+ +KACSE+G + LG
Sbjct: 124 RFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLG 183

Query: 183 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 242
           RCFHG+V+ HGF  NH I S+L  +YG N    DAR++FDEMPEPD ICWT+V+SA ++N
Sbjct: 184 RCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKN 243

Query: 243 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 302
           DLYE+ALG FY M R   L PDG TFG+VLTAC NL RL+QG+E+H K+I +G+G NVVV
Sbjct: 244 DLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVV 303

Query: 303 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 362
           ESSL+DMYGKCG+V ++++VF+ MSK+NSVSWSALLG YCQNG+ EK I IFR ME+ DL
Sbjct: 304 ESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEKDL 363

Query: 363 YSFGTVIRACAG 373
           Y FGTV++ACAG
Sbjct: 364 YCFGTVLKACAG 374

[Close]
BLAST of Cp4.1LG04g03350 vs. TAIR10
Match: AT3G24000.1 (AT3G24000.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 205.7 bits (522), Expect = 5.7e-53
Identity = 135/409 (33.01%), Postives = 214/409 (52.32%), Query Frame = 1 

Query: 27  ESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSILYASLLQTCTKVASFTHGRQIHAHVL 86
           E + L+F  +DLL     + N L+      ++   Y +LL+ CT       GR +HAH+L
Sbjct: 31  EDESLKFPSNDLLLRT--SSNDLEGSYIPADRRF-YNTLLKKCTVFKLLIQGRIVHAHIL 90

Query: 87  KSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFVKDVVSWTSMITSYVREGKPGNAI 146
           +S    D  +GN+LL++Y K GS     R+VF+ +  +D V+WT++I+ Y +  +P +A+
Sbjct: 91  QSIFRHDIVMGNTLLNMYAKCGS-LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDAL 150

Query: 147 ELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCFHGLVVRHGFNSNHVIVSSLIDMY 206
             F  ML  G  PN FTLS+VIKA +       G   HG  V+ GF+SN  + S+L+D+Y
Sbjct: 151 LFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLY 210

Query: 207 GRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLYEDALGFFYLMLRTYSLSPDGFTF 266
            R     DA+ +FD +   + + W ++I+   R    E AL  F  MLR     P  F++
Sbjct: 211 TRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRD-GFRPSHFSY 270

Query: 267 GSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESSLVDMYGKCGAVEKSQRVFDRMSK 326
            S+  AC++ G L QG+ VHA +I  G        ++L+DMY K G++  ++++FDR++K
Sbjct: 271 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 330

Query: 327 RNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL----YSFGTVIRACA-----GYCFHA 386
           R+ VSW++LL  Y Q+G  ++ +  F  M ++ +     SF +V+ AC+        +H 
Sbjct: 331 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 390

Query: 387 RPKMKNSHEKPATKHIENVPTWSKRLLDAINRDYRKFVNFPWRLSVAIF 427
              MK     P   H   V     R  D +NR  R     P   + AI+
Sbjct: 391 YELMKKDGIVPEAWHYVTVVDLLGRAGD-LNRALRFIEEMPIEPTAAIW 433

[Close]
BLAST of Cp4.1LG04g03350 vs. TAIR10
Match: AT2G03380.1 (AT2G03380.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 204.9 bits (520), Expect = 9.8e-53
Identity = 113/349 (32.38%), Postives = 192/349 (55.01%), Query Frame = 1 

Query: 28  SQILQFCGSDLLHDALHTLNSLDSFDSTTNKSILYASLLQTCTKVASFTHGRQIHAHVLK 87
           S I  +  +DL  + L   N +   ++       Y +L+  CTK+++   G+  H  ++K
Sbjct: 212 SMIAGYVKNDLCEEGLVLFNRMRE-NNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVK 271

Query: 88  SGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFVKDVVSWTSMITSYVREGKPGNAIE 147
           SG+E    +  SLL +Y K G D    RRVF+     D+V WT+MI  Y   G    A+ 
Sbjct: 272 SGIELSSCLVTSLLDMYVKCG-DISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALS 331

Query: 148 LFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCFHGLVVRHGFNSNHVIVSSLIDMYG 207
           LF  M  + I+PN  T+++V+  C  I NL LGR  HGL ++ G    +V  ++L+ MY 
Sbjct: 332 LFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNV-ANALVHMYA 391

Query: 208 RNFASSDARQLFDEMPEPDAICWTSVISALTRNDLYEDALGFFYLMLRTYSLSPDGFTFG 267
           + + + DA+ +F+   E D + W S+IS  ++N    +AL  F+ M  + S++P+G T  
Sbjct: 392 KCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRM-NSESVTPNGVTVA 451

Query: 268 SVLTACANLGRLRQGEEVHAKVIAHGL--GGNVVVESSLVDMYGKCGAVEKSQRVFDRMS 327
           S+ +ACA+LG L  G  +HA  +  G     +V V ++L+D Y KCG  + ++ +FD + 
Sbjct: 452 SLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIE 511

Query: 328 KRNSVSWSALLGVYCQNGDFEKVINIFRGM----EKIDLYSFGTVIRAC 371
           ++N+++WSA++G Y + GD    + +F  M    +K +  +F +++ AC
Sbjct: 512 EKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSAC 556

[Close]
BLAST of Cp4.1LG04g03350 vs. TAIR10
Match: AT4G33990.1 (AT4G33990.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 202.6 bits (514), Expect = 4.9e-52
Identity = 116/349 (33.24%), Postives = 194/349 (55.59%), Query Frame = 1 

Query: 28  SQILQFCGSDLLHDALHTLNSLDSFDSTTNKSILYASLLQTCTKVASFTHGRQIHAHVLK 87
           + I  +C S    +AL   N L + DS T       SLL  CT+   F  G  IH++ +K
Sbjct: 221 AMISGYCQSGNAKEALTLSNGLRAMDSVT-----VVSLLSACTEAGDFNRGVTIHSYSIK 280

Query: 88  SGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFVKDVVSWTSMITSYVREGKPGNAIE 147
            GLE++ FV N L+ LY + G   R  ++VFD ++V+D++SW S+I +Y    +P  AI 
Sbjct: 281 HGLESELFVSNKLIDLYAEFGR-LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIS 340

Query: 148 LFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCFHGLVVRHG-FNSNHVIVSSLIDMY 207
           LF +M    I+P+  TL ++    S++G++   R   G  +R G F  +  I ++++ MY
Sbjct: 341 LFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMY 400

Query: 208 GRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLYEDALGFFYLMLRTYSLSPDGFTF 267
            +      AR +F+ +P  D I W ++IS   +N    +A+  + +M     ++ +  T+
Sbjct: 401 AKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTW 460

Query: 268 GSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESSLVDMYGKCGAVEKSQRVFDRMSK 327
            SVL AC+  G LRQG ++H +++ +GL  +V V +SL DMYGKCG +E +  +F ++ +
Sbjct: 461 VSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPR 520

Query: 328 RNSVSWSALLGVYCQNGDFEKVINIFRGM----EKIDLYSFGTVIRACA 372
            NSV W+ L+  +  +G  EK + +F+ M     K D  +F T++ AC+
Sbjct: 521 VNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACS 563

[Close]
BLAST of Cp4.1LG04g03350 vs. TAIR10
Match: AT4G18520.1 (AT4G18520.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 4.1e-51
Identity = 106/311 (34.08%), Postives = 176/311 (56.59%), Query Frame = 1 

Query: 64  SLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFV 123
           S+L+ C++  +   GRQ+H+ V+K  ++ D FVG SL+ +Y K G +    R+VFDG+  
Sbjct: 289 SILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCG-EISDCRKVFDGMSN 348

Query: 124 KDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCF 183
           ++ V+WTS+I ++ REG    AI LF  M    +  N  T+ ++++AC  +G L+LG+  
Sbjct: 349 RNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKEL 408

Query: 184 HGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLY 243
           H  ++++    N  I S+L+ +Y +   S DA  +  ++P  D + WT++IS  +     
Sbjct: 409 HAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHE 468

Query: 244 EDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESS 303
            +AL F   M++   + P+ FT+ S L ACAN   L  G  +H+    +    NV V S+
Sbjct: 469 SEALDFLKEMIQE-GVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSA 528

Query: 304 LVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGME----KID 363
           L+ MY KCG V ++ RVFD M ++N VSW A++  Y +NG   + + +   ME    ++D
Sbjct: 529 LIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVD 588

Query: 364 LYSFGTVIRAC 371
            Y F T++  C
Sbjct: 589 DYIFATILSTC 597

[Close]
BLAST of Cp4.1LG04g03350 vs. NCBI nr
Match: gi|449438472|ref|XP_004137012.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Cucumis sativus])

HSP 1 Score: 609.0 bits (1569), Expect = 6.4e-171
Identity = 299/373 (80.16%), Postives = 324/373 (86.86%), Query Frame = 1 

Query: 1   MRLFIKRHCRS-FTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKS 60
           M LF+KRHC S FTSQN K STHP  K SQILQFC S LL+DALH LNS+D +DS  NK 
Sbjct: 1   MMLFLKRHCSSSFTSQNFKYSTHPSIKLSQILQFCKSGLLNDALHLLNSIDLYDSRINKP 60

Query: 61  ILYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFD 120
           +LYASLLQTC KV SFT GRQ HAHV+KSGLE DRFVGNSLLSLYFKLGSD  LTRRVFD
Sbjct: 61  LLYASLLQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLGSDSLLTRRVFD 120

Query: 121 GLFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVL 180
           GLFVKDVVSW SMIT YVREGK G AIELFWDMLD GIEPNGFTLSAVIKACSEIGNLVL
Sbjct: 121 GLFVKDVVSWASMITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVL 180

Query: 181 GRCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTR 240
           G+CFHG+VVR GF+SN VI+SSLIDMYGRN  SSDARQLFDE+ EPD +CWT+VISA TR
Sbjct: 181 GKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTR 240

Query: 241 NDLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVV 300
           NDLYE+ALGFFYL  R + L PD +TFGSVLTAC NLGRLRQGEE+HAKVIA+G  GNVV
Sbjct: 241 NDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVV 300

Query: 301 VESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKID 360
            ESSLVDMYGKCGAVEKSQR+FDRMS RNSVSWSALL VYC NGD+EK +N+FR M+++D
Sbjct: 301 TESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKEVD 360

Query: 361 LYSFGTVIRACAG 373
           LYSFGTVIRACAG
Sbjct: 361 LYSFGTVIRACAG 373

[Close]
BLAST of Cp4.1LG04g03350 vs. NCBI nr
Match: gi|659110665|ref|XP_008455346.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Cucumis melo])

HSP 1 Score: 605.5 bits (1560), Expect = 7.1e-170
Identity = 298/373 (79.89%), Postives = 325/373 (87.13%), Query Frame = 1 

Query: 1   MRLFIKRHCRS-FTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKS 60
           M LF KRHC S FTSQN K STH   K  QILQFC S LL+DALH LNS+D +DS  NK 
Sbjct: 1   MMLFFKRHCTSSFTSQNFKYSTHLSNKLFQILQFCKSGLLNDALHILNSVDLYDSRINKP 60

Query: 61  ILYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFD 120
           +LYASLLQTCTKV SF+ G Q HAHV+KSGLE DRFVGNSLLSLYFKLGS+  LTRRVFD
Sbjct: 61  LLYASLLQTCTKVDSFSSGCQFHAHVVKSGLETDRFVGNSLLSLYFKLGSNCLLTRRVFD 120

Query: 121 GLFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVL 180
           GLFVKDVVSW SMIT YVREGK G AIELFWDMLD GIEPN FTLS VIKACSEIGNLVL
Sbjct: 121 GLFVKDVVSWASMITGYVREGKSGMAIELFWDMLDSGIEPNDFTLSTVIKACSEIGNLVL 180

Query: 181 GRCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTR 240
           G+CFHG+VVR GF+SN VI+SSLIDMYGRN+ SS+ARQLFDE+ EPD +CWT+VISA TR
Sbjct: 181 GKCFHGVVVRRGFDSNPVILSSLIDMYGRNYLSSEARQLFDELLEPDPVCWTTVISAFTR 240

Query: 241 NDLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVV 300
           ND YE+ALGFFYLM R Y LSPD +TFGSVLTAC NLGRL+QGEE+HAKVIA+G GGNVV
Sbjct: 241 NDFYEEALGFFYLMHRAYRLSPDNYTFGSVLTACGNLGRLKQGEEIHAKVIAYGFGGNVV 300

Query: 301 VESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKID 360
           VESSLVDMYGKCGAVEKSQRVFDRMS RNSVSWSALL VYCQNGDFEKV+++FR M+K+D
Sbjct: 301 VESSLVDMYGKCGAVEKSQRVFDRMSNRNSVSWSALLAVYCQNGDFEKVVSLFREMKKVD 360

Query: 361 LYSFGTVIRACAG 373
           LYSFGTV+RACAG
Sbjct: 361 LYSFGTVLRACAG 373

[Close]
BLAST of Cp4.1LG04g03350 vs. NCBI nr
Match: gi|694332952|ref|XP_009357088.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Pyrus x bretschneideri])

HSP 1 Score: 562.0 bits (1447), Expect = 9.0e-157
Identity = 275/372 (73.92%), Postives = 313/372 (84.14%), Query Frame = 1 

Query: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 60
           M+L  KRHC S TS NL+N+  P +K+S+ILQ C   LL DA+  LNS+DS + T  K I
Sbjct: 1   MKLVFKRHCSSLTSFNLQNTKTPSSKQSKILQLCKLGLLSDAIRVLNSIDSGEITL-KPI 60

Query: 61  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 120
           LYASLLQTCTKV SF HG Q+HAHV+KSGLE DRFVGNSLL+LYFKL  +   TRRVFDG
Sbjct: 61  LYASLLQTCTKVVSFNHGLQVHAHVVKSGLETDRFVGNSLLALYFKLVPNMSETRRVFDG 120

Query: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180
           LFVKDV+SWTSMIT YVR GKPGN+IE+FW+ML  GIEPN FTLSAV+KACSE+G+L LG
Sbjct: 121 LFVKDVISWTSMITGYVRAGKPGNSIEMFWEMLKFGIEPNAFTLSAVVKACSEVGDLRLG 180

Query: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240
            CFHG+V R GF+SN VIVS+LI MYGRN+ S DAR+LFDEM EP AICWTSVISA TR+
Sbjct: 181 LCFHGVVFRRGFDSNDVIVSALIYMYGRNYRSEDARRLFDEMSEPGAICWTSVISAFTRS 240

Query: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300
           DL+E+ALGFFYLM R + LSPDGFTFG+VLTAC NLGRLRQG EVHAKVI +GL GNVVV
Sbjct: 241 DLFEEALGFFYLMQRNHGLSPDGFTFGTVLTACGNLGRLRQGREVHAKVITYGLYGNVVV 300

Query: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360
           ESSLVDMYGKCG+VE ++RVFDRMSK+NSVSWSALLGVYCQ GDFE V+  FR ME+ DL
Sbjct: 301 ESSLVDMYGKCGSVENARRVFDRMSKKNSVSWSALLGVYCQAGDFESVVKHFREMEETDL 360

Query: 361 YSFGTVIRACAG 373
           YSFGTV+RACAG
Sbjct: 361 YSFGTVLRACAG 371

[Close]
BLAST of Cp4.1LG04g03350 vs. NCBI nr
Match: gi|595946318|ref|XP_007216136.1| (hypothetical protein PRUPE_ppa019108mg, partial [Prunus persica])

HSP 1 Score: 556.6 bits (1433), Expect = 3.8e-155
Identity = 274/372 (73.66%), Postives = 313/372 (84.14%), Query Frame = 1 

Query: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 60
           M+L +KRHC S TS NL+++  P  K+SQIL+ C   LL DA+  LNS+DS + T  K I
Sbjct: 1   MKLVLKRHCSSLTSLNLQSTKIPSPKQSQILRLCKLGLLSDAIRVLNSIDSGEITL-KPI 60

Query: 61  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 120
           LYASLLQTCTK  SF HG QIHAHV+KSGLE DRFVGNSLLSLYFKL  +   TRRVFDG
Sbjct: 61  LYASLLQTCTKAVSFNHGLQIHAHVVKSGLETDRFVGNSLLSLYFKLVPNMSETRRVFDG 120

Query: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180
           LFVKDV+SWTSMIT YVR GKPGN+IE+F+DML  GIEPN FTLSAV+KACSEIG+L LG
Sbjct: 121 LFVKDVISWTSMITGYVRAGKPGNSIEVFYDMLKFGIEPNAFTLSAVVKACSEIGDLRLG 180

Query: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240
            CFHG+VVR GF SNHVI+S+LI+MYGRN+ S DAR LFDE+ EP AICWTS+ISALTR+
Sbjct: 181 LCFHGVVVRRGFVSNHVIISALINMYGRNYRSEDARLLFDELTEPGAICWTSIISALTRS 240

Query: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300
           DL+E+ALGFFYLM R + LSPDGFTFG+VL AC NLGRLRQG E+HAKVI +GL GNVVV
Sbjct: 241 DLFEEALGFFYLMHRYHGLSPDGFTFGTVLAACGNLGRLRQGREMHAKVITYGLCGNVVV 300

Query: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360
           ESSLVDMYGKCG+VE ++RVFDR+ K+NSVSWSALLGVYCQ GDFE VIN FR ME+ DL
Sbjct: 301 ESSLVDMYGKCGSVECARRVFDRIPKKNSVSWSALLGVYCQTGDFESVINHFREMEEADL 360

Query: 361 YSFGTVIRACAG 373
           YSFGTV+RACAG
Sbjct: 361 YSFGTVLRACAG 371

[Close]
BLAST of Cp4.1LG04g03350 vs. NCBI nr
Match: gi|658041113|ref|XP_008356170.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g03540-like [Malus domestica])

HSP 1 Score: 549.3 bits (1414), Expect = 6.0e-153
Identity = 273/372 (73.39%), Postives = 306/372 (82.26%), Query Frame = 1 

Query: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 60
           M+L  KRHC S TS NL+N+  P  K+S+ILQ C   LL DA+  LNS+DS + T  K I
Sbjct: 25  MKLVFKRHCSSLTSXNLQNTKTPSPKQSKILQLCKLGLLPDAIRVLNSIDSGEITL-KPI 84

Query: 61  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 120
           LYASLLQTCTK  SF HG Q+HAHV+KSGLE DRFVGNSLL+LYFKL  +   TRRVFDG
Sbjct: 85  LYASLLQTCTKAVSFNHGLQVHAHVVKSGLETDRFVGNSLLALYFKLVPNMSETRRVFDG 144

Query: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180
           LFVKDV+SWTSMIT YVR GKPGN+IE FW+ML  GIEPN FTLSAV+KACSEIG+L LG
Sbjct: 145 LFVKDVISWTSMITGYVRAGKPGNSIETFWEMLKFGIEPNAFTLSAVVKACSEIGDLRLG 204

Query: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240
            CFHG+V R GF+SN VIVS+LI MYGRN  S DAR+LFDEM EP  ICWTSVISA TR+
Sbjct: 205 LCFHGVVFRRGFDSNDVIVSALIYMYGRNCRSEDARRLFDEMSEPGPICWTSVISAFTRS 264

Query: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300
           DL+E+ALGFFYLM R + LSPDGFTFG+VLTAC NLGRLRQG EVHAKVI +GL GNVVV
Sbjct: 265 DLFEEALGFFYLMQRNHGLSPDGFTFGTVLTACGNLGRLRQGREVHAKVITYGLYGNVVV 324

Query: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360
           ESSLVDMYGKCG+VE + RVFDRMSK+NSVS SALLGVYCQ GDFE V+  FR ME+ DL
Sbjct: 325 ESSLVDMYGKCGSVENAXRVFDRMSKKNSVSRSALLGVYCQAGDFESVVKHFREMEEADL 384

Query: 361 YSFGTVIRACAG 373
           YSFGTV+RACAG
Sbjct: 385 YSFGTVLRACAG 395

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g03350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR8_ARATH2.0e-12459.68Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana GN... [more]
PP252_ARATH1.0e-5133.01Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop... [more]
PP146_ARATH1.7e-5132.38Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidop... [more]
PP348_ARATH8.6e-5133.24Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN... [more]
PP319_ARATH7.3e-5034.08Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG04g03350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5P0_CUCSA4.5e-17180.16Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047230 PE=4 SV=1[more]
M5XE21_PRUPE2.6e-15573.66Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019108mg PE=4 S... [more]
A0A061E2T1_THECC2.9e-14669.89Pentatricopeptide repeat (PPR-like) superfamily protein OS=Theobroma cacao GN=TC... [more]
A0A067JXD0_JATCU1.1e-14568.98Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25836 PE=4 SV=1[more]
B9RW53_RICCO1.3e-14369.17Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
BLAST of Cp4.1LG04g03350 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03540.11.1e-12559.68 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT3G24000.15.7e-5333.01 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G03380.19.8e-5332.38 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G33990.14.9e-5233.24 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G18520.14.1e-5134.08 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Cp4.1LG04g03350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438472|ref|XP_004137012.1|6.4e-17180.16PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Cucumis sativu... [more]
gi|659110665|ref|XP_008455346.1|7.1e-17079.89PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Cucumis melo][more]
gi|694332952|ref|XP_009357088.1|9.0e-15773.92PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Pyrus x bretsc... [more]
gi|595946318|ref|XP_007216136.1|3.8e-15573.66hypothetical protein PRUPE_ppa019108mg, partial [Prunus persica][more]
gi|658041113|ref|XP_008356170.1|6.0e-15373.39PREDICTED: pentatricopeptide repeat-containing protein At1g03540-like [Malus dom... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g03350.1Cp4.1LG04g03350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 229..255
score: 2.5E-4coord: 198..223
score: 0.026coord: 330..358
score: 4.2E-6coord: 302..328
score: 0.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 124..171
score: 3.0
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 330..357
score: 3.0E-5coord: 127..160
score: 5.8E-6coord: 228..262
score: 1.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 125..159
score: 12.441coord: 297..327
score: 8.418coord: 160..194
score: 6.38coord: 93..124
score: 5.251coord: 58..92
score: 6.588coord: 226..261
score: 8.221coord: 262..296
score: 8.057coord: 328..362
score: 10.26coord: 195..225
score: 7
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 224..354
score: 3.0E-4coord: 125..156
score: 3.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 45..372
score: 2.3E
NoneNo IPR availablePANTHERPTHR24015:SF328SUBFAMILY NOT NAMEDcoord: 45..372
score: 2.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g03350Cucsa.147910Cucumber (Gy14) v1cgycpeB0395
Cp4.1LG04g03350CmaCh11G018600Cucurbita maxima (Rimu)cmacpeB148
Cp4.1LG04g03350Cla007731Watermelon (97103) v1cpewmB666
Cp4.1LG04g03350Csa7G047230Cucumber (Chinese Long) v2cpecuB690
Cp4.1LG04g03350MELO3C018759Melon (DHL92) v3.5.1cpemeB609
Cp4.1LG04g03350ClCG02G001260Watermelon (Charleston Gray)cpewcgB596
Cp4.1LG04g03350CSPI07G04370Wild cucumber (PI 183967)cpecpiB692
Cp4.1LG04g03350Lsi11G015230Bottle gourd (USVL1VR-Ls)cpelsiB526
Cp4.1LG04g03350MELO3C018759.2Melon (DHL92) v3.6.1cpemedB721
Cp4.1LG04g03350CsaV3_7G004180Cucumber (Chinese Long) v3cpecucB0863
Cp4.1LG04g03350Bhi05G001582Wax gourdcpewgoB0844
Cp4.1LG04g03350CsGy7G003990Cucumber (Gy14) v2cgybcpeB964
Cp4.1LG04g03350Carg19103Silver-seed gourdcarcpeB1015
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g03350Silver-seed gourdcarcpeB1223
Cp4.1LG04g03350Cucumber (Chinese Long) v3cpecucB0855
Cp4.1LG04g03350Wax gourdcpewgoB0865
Cp4.1LG04g03350Cucurbita pepo (Zucchini)cpecpeB056
Cp4.1LG04g03350Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG04g03350Cucurbita pepo (Zucchini)cpecpeB492
Cp4.1LG04g03350Cucumber (Gy14) v1cgycpeB0329
Cp4.1LG04g03350Cucurbita maxima (Rimu)cmacpeB537
Cp4.1LG04g03350Cucurbita maxima (Rimu)cmacpeB642
Cp4.1LG04g03350Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g03350Cucurbita moschata (Rifu)cmocpeB492
Cp4.1LG04g03350Cucurbita moschata (Rifu)cmocpeB525
Cp4.1LG04g03350Cucurbita moschata (Rifu)cmocpeB592
Cp4.1LG04g03350Bottle gourd (USVL1VR-Ls)cpelsiB521
Cp4.1LG04g03350Watermelon (Charleston Gray)cpewcgB592
Cp4.1LG04g03350Watermelon (97103) v1cpewmB668
Cp4.1LG04g03350Melon (DHL92) v3.6.1cpemedB773
Cp4.1LG04g03350Silver-seed gourdcarcpeB0047
Cp4.1LG04g03350Silver-seed gourdcarcpeB0217