Cp4.1LG04g03170 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g03170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBasic helix-loop-helix transcription factor
LocationCp4.1LG04 : 7458963 .. 7459872 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCGCCATTTCCAGTTCTCGACTTCGTCTTCCTCGGCTGCAAAGATCGAACGGCGAATCGTAGAGAAAAACAGAAGAAACCAGATGAAAACCCTCTGTTCTCAGCTCAATTCCCTTCTCCCAAATCAGGATTCCAAGGTCCTTTCTTATCTTCCTTCACATAAAACAGAGCAAAAACAGAGAAAAACAGAGCAAAAACAGAGCAAAAACAGAGAAAAACAGAGCAAAACAGAGCAAAACAGAGAAAAACAGAGCATCCTCTGTTCTTGAATGAATTTTACATGAAATTAACGAACACCCACGAACCAAAATCTTGATTTGTTGTGTAATTTTATGCAGGAGATTTCATTAGCATTGCCGGATCAAATCGATGAAGCTGTTAAGTACATAAAAGAGCTGGAGAAGAAAGTGAATTTAGCTAAGGAGAAGAAGGAAAAGCTAGAGGGGAAGAACAAGAGCTCCATGAATATCGAGTCTTCGTCGTCGTCGTCGGCTTCGCCTCAGCTCAAAATCCATCAATCTGGTCGAAGCTTGGAGATAATTTTAAGCAGTGGATTGGATAATCAGTATCTCTTCTCTGAAACCATTAGCATTCTTCAAGAAGAAGGCGTTGAAGTTGTGAATGCTAGCTTCTCTGTTTCTGGGAGCTCTGTTTTTCAAACATTCCATGCACAAGTAATATCAATTCTCAAGAACTGATATCATATTGATTATGGTGAGTTTGTTCTTGTTGTTAATGGGTTTTTGTGGTTTGATCATACAGCTCGAGGGCTCGATGATCGAATTCGAGGCAGCGAAGGTGACGGAGAGATTGAAGCGATTGGTTTACGGATCAAACAGCGACATGGAATTGCAGAAGGAGAAGCAATGGTGGGATGAATTCCCTTCTGATGATTTGGATTATTAA

mRNA sequence

ATGGATCGCCATTTCCAGTTCTCGACTTCGTCTTCCTCGGCTGCAAAGATCGAACGGCGAATCGTAGAGAAAAACAGAAGAAACCAGATGAAAACCCTCTGTTCTCAGCTCAATTCCCTTCTCCCAAATCAGGATTCCAAGGAGATTTCATTAGCATTGCCGGATCAAATCGATGAAGCTGTTAAGTACATAAAAGAGCTGGAGAAGAAAGTGAATTTAGCTAAGGAGAAGAAGGAAAAGCTAGAGGGGAAGAACAAGAGCTCCATGAATATCGAGTCTTCGTCGTCGTCGTCGGCTTCGCCTCAGCTCAAAATCCATCAATCTGGTCGAAGCTTGGAGATAATTTTAAGCAGTGGATTGGATAATCAGTATCTCTTCTCTGAAACCATTAGCATTCTTCAAGAAGAAGGCGTTGAAGTTGTGAATGCTAGCTTCTCTGTTTCTGGGAGCTCTGTTTTTCAAACATTCCATGCACAACTCGAGGGCTCGATGATCGAATTCGAGGCAGCGAAGGTGACGGAGAGATTGAAGCGATTGGTTTACGGATCAAACAGCGACATGGAATTGCAGAAGGAGAAGCAATGGTGGGATGAATTCCCTTCTGATGATTTGGATTATTAA

Coding sequence (CDS)

ATGGATCGCCATTTCCAGTTCTCGACTTCGTCTTCCTCGGCTGCAAAGATCGAACGGCGAATCGTAGAGAAAAACAGAAGAAACCAGATGAAAACCCTCTGTTCTCAGCTCAATTCCCTTCTCCCAAATCAGGATTCCAAGGAGATTTCATTAGCATTGCCGGATCAAATCGATGAAGCTGTTAAGTACATAAAAGAGCTGGAGAAGAAAGTGAATTTAGCTAAGGAGAAGAAGGAAAAGCTAGAGGGGAAGAACAAGAGCTCCATGAATATCGAGTCTTCGTCGTCGTCGTCGGCTTCGCCTCAGCTCAAAATCCATCAATCTGGTCGAAGCTTGGAGATAATTTTAAGCAGTGGATTGGATAATCAGTATCTCTTCTCTGAAACCATTAGCATTCTTCAAGAAGAAGGCGTTGAAGTTGTGAATGCTAGCTTCTCTGTTTCTGGGAGCTCTGTTTTTCAAACATTCCATGCACAACTCGAGGGCTCGATGATCGAATTCGAGGCAGCGAAGGTGACGGAGAGATTGAAGCGATTGGTTTACGGATCAAACAGCGACATGGAATTGCAGAAGGAGAAGCAATGGTGGGATGAATTCCCTTCTGATGATTTGGATTATTAA

Protein sequence

MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLVYGSNSDMELQKEKQWWDEFPSDDLDY
Homology
[Close]
BLAST of Cp4.1LG04g03170 vs. TrEMBL
Match: A0A0A0K2C9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G048070 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 9.6e-71
Identity = 152/210 (72.38%), Postives = 179/210 (85.24%), Query Frame = 1 

Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           MD +FQFS SSS+AAKIERRI+EKNRRNQMK LC QL SL+P QDSKE+SLALPDQID A
Sbjct: 1   MDPNFQFSASSSTAAKIERRIIEKNRRNQMKNLCDQLKSLVPQQDSKEVSLALPDQIDVA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIE---SSSSSSASPQLKIHQSGRSLEIILS 120
           +KYIK+LEK+VN AKEKK +L+GKNKS++N++   SSSSSS+SPQLKI+Q G+SLEIILS
Sbjct: 61  IKYIKDLEKRVNSAKEKKNRLQGKNKSAINMDSSSSSSSSSSSPQLKINQMGKSLEIILS 120

Query: 121 SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK 180
           SG DNQYL  ET+ IL+EEG EVV+ASFSVSG+SVF T HAQL  SM+EF   K TERL 
Sbjct: 121 SGNDNQYLLCETLRILEEEGTEVVSASFSVSGNSVFHTIHAQLGDSMVEFGMTKATERLT 180

Query: 181 RLVYGSNSDMELQK-EKQWWDEFPSDDLDY 207
           RLVY SNSD+ELQK EKQWW EFPS++ ++
Sbjct: 181 RLVYRSNSDVELQKEEKQWWKEFPSENWEF 210

[Close]
BLAST of Cp4.1LG04g03170 vs. TrEMBL
Match: U5FEU0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s13090g PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.7e-41
Identity = 108/191 (56.54%), Postives = 135/191 (70.68%), Query Frame = 1 

Query: 10  SSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKELEK 69
           S+ S+ K ER++VE+NRRNQMK+L S LNSLLPNQ+ KE    LPDQID A+ YIK LE+
Sbjct: 33  SNISSTKTERKVVERNRRNQMKSLYSSLNSLLPNQNFKEAQ-PLPDQIDRAINYIKSLEE 92

Query: 70  KVNLAKEKKEKLEGKNKSSMNIES---SSSSSASPQLKIHQSGRSLEIILSSGLDNQYLF 129
           K+  A+EKKE L    K S        SS++S SPQLKIH+ G +LEI+L+SGLDNQ+LF
Sbjct: 93  KLEKAREKKESLARSRKRSYTCTFDPISSAASKSPQLKIHEIGSALEIVLTSGLDNQFLF 152

Query: 130 SETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLVYGSNSD 189
            E ISIL EEGVEVV+++F   G S F   HAQ++GS   F AA+VTERL R + GS S+
Sbjct: 153 YEIISILHEEGVEVVSSNFQALGDSFFHIVHAQMKGSADGFGAARVTERLNRFISGSTSE 212

Query: 190 MELQKEKQWWD 198
           +EL  E   WD
Sbjct: 213 IELDSE--LWD 220

[Close]
BLAST of Cp4.1LG04g03170 vs. TrEMBL
Match: U5FHG3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s13070g PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.6e-41
Identity = 109/193 (56.48%), Postives = 135/193 (69.95%), Query Frame = 1 

Query: 8   STSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKEL 67
           S S+ S+ K ER++VE+NRRNQMK+L S LNSLLPNQ+ KE    LPDQID A+ YIK L
Sbjct: 15  SRSNISSTKTERKVVERNRRNQMKSLYSSLNSLLPNQNFKEAQ-PLPDQIDRAINYIKSL 74

Query: 68  EKKVNLAKEKKEKLEGKNKSSMNIES---SSSSSASPQLKIHQSGRSLEIILSSGLDNQY 127
           E+K+  A+EKKE L    K S        SS++S SPQLKIH+ G +LEI+L+SGL NQ+
Sbjct: 75  EEKLERAREKKESLARSRKRSYTCTFDPISSAASKSPQLKIHEIGSALEIVLTSGLGNQF 134

Query: 128 LFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLVYGSN 187
           LF E ISIL EEGVEVV+A+F   G S F   HAQ++GS   F AA+VTERL R + GS 
Sbjct: 135 LFYEIISILHEEGVEVVSANFQALGDSFFHIVHAQMKGSADGFGAARVTERLNRFISGST 194

Query: 188 SDMELQKEKQWWD 198
           S++EL  E   WD
Sbjct: 195 SEIELDSE--LWD 204

[Close]
BLAST of Cp4.1LG04g03170 vs. TrEMBL
Match: A0A067JJH0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25773 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.6e-41
Identity = 104/190 (54.74%), Postives = 139/190 (73.16%), Query Frame = 1 

Query: 11  SSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKELEKK 70
           S+S+ K ER+++EKNRRNQMKTL S LNSLLP +++KE +L LPDQIDEA+ YIK LE +
Sbjct: 31  SASSTKTERKVIEKNRRNQMKTLFSNLNSLLPKENAKE-ALPLPDQIDEAINYIKSLEAR 90

Query: 71  VNLAKEKKEKLEGKNKSSMNIESSSSSSAS---PQLKIHQSGRSLEIILSSGLDNQYLFS 130
           +  ++EKKE+L  K +S  +  +S  S+++   PQL+I + G +L+I L SGLDNQ+LF 
Sbjct: 91  LKKSQEKKERLSSKKRSFSDYSNSCESTSTLKAPQLQIREVGSALQITLISGLDNQFLFC 150

Query: 131 ETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLVYGSNSDM 190
           E I ILQEE VE+VNASFSV+ SS+F   HAQ+  S   F  AKV+ERL RL+ GS S++
Sbjct: 151 EMIRILQEENVEIVNASFSVAASSIFHVVHAQMRESDFMFGGAKVSERLNRLINGSTSEI 210

Query: 191 ELQKEKQWWD 198
           EL  E + WD
Sbjct: 211 EL--EPELWD 217

[Close]
BLAST of Cp4.1LG04g03170 vs. TrEMBL
Match: W9RA84_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010338 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.1e-41
Identity = 104/192 (54.17%), Postives = 138/192 (71.88%), Query Frame = 1 

Query: 10  SSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKELEK 69
           S SSA KIERRI+EKNRRNQMK L S+LNSLLP Q+SKE+   LPDQ+DEA+ +IK LE 
Sbjct: 22  SQSSATKIERRIIEKNRRNQMKVLYSKLNSLLPPQNSKEVQ-TLPDQVDEAINHIKSLEA 81

Query: 70  KVNLAKEKKEKLEGKNKS--SMNIESSSSSSASPQLKIHQSGRSLEIILSSGLDNQYLFS 129
           ++   KEKK+ L G+ +S    N   S  S  SPQ++IH+ G  +E++L +GLDNQ++F 
Sbjct: 82  RLKKYKEKKKSLLGRKRSYTCANSLESVGSQRSPQIEIHEIGSVIEVVLITGLDNQFIFY 141

Query: 130 ETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLVYGSNSDM 189
           E I IL EE  +VV+A +SVS  S+F   HA++  S+  F A K++ERLKR V GS+SD+
Sbjct: 142 ELIRILHEERADVVDAKYSVSRDSIFHVVHAEIADSI--FGATKISERLKRFVSGSSSDI 201

Query: 190 ELQKEKQWWDEF 200
           ELQ + QWWD+F
Sbjct: 202 ELQPD-QWWDDF 209

[Close]
BLAST of Cp4.1LG04g03170 vs. TAIR10
Match: AT4G20970.1 (AT4G20970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-19
Identity = 67/184 (36.41%), Postives = 111/184 (60.33%), Query Frame = 1 

Query: 9   TSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKELE 68
           +++  +  ++R+ VEKNRR QMK+L S+L SLLP+  S E  L LPDQ+DEA  YIK+L+
Sbjct: 6   SNTGQSRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKLQ 65

Query: 69  KKVNLAKEKKEKLEGKNK-SSMNIESSSSSSAS---------PQLKIHQSGRSLEIILSS 128
             V   +E+K  L        +N   SSS S+S         P+++I ++G    I L +
Sbjct: 66  VNVEKKRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVT 125

Query: 129 GLDNQYLFSETISILQEE-GVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEA-AKVTERL 181
            L+++++F E I +L EE G E+ +A +S+   +VF T H ++E    ++ A +++ ERL
Sbjct: 126 SLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEH--DYGARSQIPERL 185

[Close]
BLAST of Cp4.1LG04g03170 vs. TAIR10
Match: AT1G10585.1 (AT1G10585.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-09
Identity = 54/183 (29.51%), Postives = 94/183 (51.37%), Query Frame = 1 

Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           M R  +    +SS+ + +R + EK+RR +MK L S L+S +    S    L +P  ID+A
Sbjct: 1   MGRAREIGEGNSSSLREQRNLREKDRRMRMKHLFSILSSHV----SPTRKLPVPHLIDQA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGL 120
             Y+ +L++ VN  KEKK  L      ++       S   P+L I     ++E+ L   L
Sbjct: 61  TSYMIQLKENVNYLKEKKRTLLQGELGNL----YEGSFLLPKLSIRSRDSTIEMNLIMDL 120

Query: 121 D-NQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRL 180
           +  + +  E +SI +EEG +V++A+          T  AQ   S I  + +++ ER++++
Sbjct: 121 NMKRVMLHELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPSRIEERVRKI 175

Query: 181 VYG 183
           +YG
Sbjct: 181 IYG 175

[Close]
BLAST of Cp4.1LG04g03170 vs. TAIR10
Match: AT1G10586.1 (AT1G10586.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-08
Identity = 53/181 (29.28%), Postives = 93/181 (51.38%), Query Frame = 1 

Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           M+R  +    S+S+ + +R + EK RR +MK L S L+S +    S    L +P  ID+A
Sbjct: 1   MERAREIGEGSASSLREQRNLREKERRMRMKHLFSILSSHV----SPTRRLPVPQLIDQA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGL 120
           V Y+ +L++KVN   E K ++ G    +     S  SS  P+L I      +E+ L   L
Sbjct: 61  VSYMIQLKEKVNYLNEMKRRMLGGEVKN----RSEGSSLLPKLSIRSLDSIIEMNLVMDL 120

Query: 121 DNQ-YLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRL 180
           + +  +  + +S+ +EEG +V++A+        F T  AQ     I  + +++ ERL+ +
Sbjct: 121 NMKGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDPSRIEERLRDI 173

[Close]
BLAST of Cp4.1LG04g03170 vs. NCBI nr
Match: gi|659110598|ref|XP_008455310.1| (PREDICTED: transcription factor bHLH101-like [Cucumis melo])

HSP 1 Score: 283.9 bits (725), Expect = 2.3e-73
Identity = 152/202 (75.25%), Postives = 177/202 (87.62%), Query Frame = 1 

Query: 4   HFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKY 63
           +FQFS SSS+AAKIERRI+EKNRRNQMK LC QL SL+P Q SKE+SLALPDQID A+KY
Sbjct: 5   NFQFSASSSTAAKIERRIIEKNRRNQMKNLCDQLKSLVPQQYSKEVSLALPDQIDVAIKY 64

Query: 64  IKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGLDNQ 123
           IK+LEKKVN AKEKK +L+GKNKS++N++SSSSSS  PQLKI+Q G+SLEI+LSSG+DNQ
Sbjct: 65  IKDLEKKVNSAKEKKNRLQGKNKSAINMDSSSSSS--PQLKINQMGKSLEIVLSSGIDNQ 124

Query: 124 YLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLVYGS 183
           YL  ET+ ILQEEG+EVVNASFSVSG SVF T HA+L  SM+EF   K TERLKRLVYGS
Sbjct: 125 YLLCETLRILQEEGIEVVNASFSVSGKSVFHTIHAELGDSMVEFGTTKATERLKRLVYGS 184

Query: 184 NSDMELQKEKQWWDEFPSDDLD 206
           NSD+ELQKEKQWW+EFPS++ D
Sbjct: 185 NSDVELQKEKQWWEEFPSENWD 204

[Close]
BLAST of Cp4.1LG04g03170 vs. NCBI nr
Match: gi|778730135|ref|XP_011659708.1| (PREDICTED: transcription factor bHLH125-like [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 1.4e-70
Identity = 152/210 (72.38%), Postives = 179/210 (85.24%), Query Frame = 1 

Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           MD +FQFS SSS+AAKIERRI+EKNRRNQMK LC QL SL+P QDSKE+SLALPDQID A
Sbjct: 1   MDPNFQFSASSSTAAKIERRIIEKNRRNQMKNLCDQLKSLVPQQDSKEVSLALPDQIDVA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIE---SSSSSSASPQLKIHQSGRSLEIILS 120
           +KYIK+LEK+VN AKEKK +L+GKNKS++N++   SSSSSS+SPQLKI+Q G+SLEIILS
Sbjct: 61  IKYIKDLEKRVNSAKEKKNRLQGKNKSAINMDSSSSSSSSSSSPQLKINQMGKSLEIILS 120

Query: 121 SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK 180
           SG DNQYL  ET+ IL+EEG EVV+ASFSVSG+SVF T HAQL  SM+EF   K TERL 
Sbjct: 121 SGNDNQYLLCETLRILEEEGTEVVSASFSVSGNSVFHTIHAQLGDSMVEFGMTKATERLT 180

Query: 181 RLVYGSNSDMELQK-EKQWWDEFPSDDLDY 207
           RLVY SNSD+ELQK EKQWW EFPS++ ++
Sbjct: 181 RLVYRSNSDVELQKEEKQWWKEFPSENWEF 210

[Close]
BLAST of Cp4.1LG04g03170 vs. NCBI nr
Match: gi|743917785|ref|XP_011002885.1| (PREDICTED: transcription factor bHLH118-like isoform X4 [Populus euphratica])

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-41
Identity = 109/192 (56.77%), Postives = 138/192 (71.88%), Query Frame = 1 

Query: 8   STSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKEL 67
           S S+ S+ K ER+IVE+NRRNQMK+L S LNSLLPN++ KE    LPDQID A+ YIK L
Sbjct: 15  SRSNISSTKTERKIVERNRRNQMKSLYSNLNSLLPNRNFKEAQ-PLPDQIDRAINYIKSL 74

Query: 68  EKKVNLAKEKKEKLEGKNKSSMNIES--SSSSSASPQLKIHQSGRSLEIILSSGLDNQYL 127
           E+K+  A+EKKE L  + +S        SS++S SPQLKIH+ G +LEI+L+SGLDNQ+L
Sbjct: 75  EEKLEKAREKKESLRSRKRSYTCTFDPISSAASKSPQLKIHEIGSALEIVLTSGLDNQFL 134

Query: 128 FSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLVYGSNS 187
           F E ISIL EEGVEVV+A+F   G S+F   HAQ++GS   F AA+VTERL R + GS S
Sbjct: 135 FYEIISILHEEGVEVVSANFQALGDSLFHIVHAQMKGSADGFGAARVTERLNRFISGSTS 194

Query: 188 DMELQKEKQWWD 198
           ++EL  E   WD
Sbjct: 195 EIELDSE--LWD 203

[Close]
BLAST of Cp4.1LG04g03170 vs. NCBI nr
Match: gi|566243453|ref|XP_006371551.1| (hypothetical protein POPTR_0019s13090g [Populus trichocarpa])

HSP 1 Score: 176.8 bits (447), Expect = 3.9e-41
Identity = 108/191 (56.54%), Postives = 135/191 (70.68%), Query Frame = 1 

Query: 10  SSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKELEK 69
           S+ S+ K ER++VE+NRRNQMK+L S LNSLLPNQ+ KE    LPDQID A+ YIK LE+
Sbjct: 33  SNISSTKTERKVVERNRRNQMKSLYSSLNSLLPNQNFKEAQ-PLPDQIDRAINYIKSLEE 92

Query: 70  KVNLAKEKKEKLEGKNKSSMNIES---SSSSSASPQLKIHQSGRSLEIILSSGLDNQYLF 129
           K+  A+EKKE L    K S        SS++S SPQLKIH+ G +LEI+L+SGLDNQ+LF
Sbjct: 93  KLEKAREKKESLARSRKRSYTCTFDPISSAASKSPQLKIHEIGSALEIVLTSGLDNQFLF 152

Query: 130 SETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLVYGSNSD 189
            E ISIL EEGVEVV+++F   G S F   HAQ++GS   F AA+VTERL R + GS S+
Sbjct: 153 YEIISILHEEGVEVVSSNFQALGDSFFHIVHAQMKGSADGFGAARVTERLNRFISGSTSE 212

Query: 190 MELQKEKQWWD 198
           +EL  E   WD
Sbjct: 213 IELDSE--LWD 220

[Close]
BLAST of Cp4.1LG04g03170 vs. NCBI nr
Match: gi|566243427|ref|XP_006371549.1| (hypothetical protein POPTR_0019s13070g [Populus trichocarpa])

HSP 1 Score: 176.4 bits (446), Expect = 5.1e-41
Identity = 109/193 (56.48%), Postives = 135/193 (69.95%), Query Frame = 1 

Query: 8   STSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKEL 67
           S S+ S+ K ER++VE+NRRNQMK+L S LNSLLPNQ+ KE    LPDQID A+ YIK L
Sbjct: 15  SRSNISSTKTERKVVERNRRNQMKSLYSSLNSLLPNQNFKEAQ-PLPDQIDRAINYIKSL 74

Query: 68  EKKVNLAKEKKEKLEGKNKSSMNIES---SSSSSASPQLKIHQSGRSLEIILSSGLDNQY 127
           E+K+  A+EKKE L    K S        SS++S SPQLKIH+ G +LEI+L+SGL NQ+
Sbjct: 75  EEKLERAREKKESLARSRKRSYTCTFDPISSAASKSPQLKIHEIGSALEIVLTSGLGNQF 134

Query: 128 LFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLVYGSN 187
           LF E ISIL EEGVEVV+A+F   G S F   HAQ++GS   F AA+VTERL R + GS 
Sbjct: 135 LFYEIISILHEEGVEVVSANFQALGDSFFHIVHAQMKGSADGFGAARVTERLNRFISGST 194

Query: 188 SDMELQKEKQWWD 198
           S++EL  E   WD
Sbjct: 195 SEIELDSE--LWD 204

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g03170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g03170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2C9_CUCSA9.6e-7172.38Uncharacterized protein OS=Cucumis sativus GN=Csa_7G048070 PE=4 SV=1[more]
U5FEU0_POPTR2.7e-4156.54Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s13090g PE=4 SV=1[more]
U5FHG3_POPTR3.6e-4156.48Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s13070g PE=4 SV=1[more]
A0A067JJH0_JATCU4.6e-4154.74Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25773 PE=4 SV=1[more]
W9RA84_9ROSA6.1e-4154.17Uncharacterized protein OS=Morus notabilis GN=L484_010338 PE=4 SV=1[more]
BLAST of Cp4.1LG04g03170 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G20970.13.4e-1936.41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G10585.14.2e-0929.51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G10586.12.1e-0829.28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of Cp4.1LG04g03170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110598|ref|XP_008455310.1|2.3e-7375.25PREDICTED: transcription factor bHLH101-like [Cucumis melo][more]
gi|778730135|ref|XP_011659708.1|1.4e-7072.38PREDICTED: transcription factor bHLH125-like [Cucumis sativus][more]
gi|743917785|ref|XP_011002885.1|1.3e-4156.77PREDICTED: transcription factor bHLH118-like isoform X4 [Populus euphratica][more]
gi|566243453|ref|XP_006371551.1|3.9e-4156.54hypothetical protein POPTR_0019s13090g [Populus trichocarpa][more]
gi|566243427|ref|XP_006371549.1|5.1e-4156.48hypothetical protein POPTR_0019s13070g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR015660MASH1/Ascl1a-like
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g03170.1Cp4.1LG04g03170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 19..86
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 20..68
score: 2.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 14..67
score: 11
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 16..85
score: 1.8
IPR015660Achaete-scute transcription factor-relatedPANTHERPTHR13935ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATEDcoord: 1..192
score: 2.1
NoneNo IPR availableunknownCoilCoilcoord: 57..84
scor
NoneNo IPR availablePANTHERPTHR13935:SF53BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEINcoord: 1..192
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g03170Cucsa.147580Cucumber (Gy14) v1cgycpeB0395
Cp4.1LG04g03170CmaCh02G000960Cucurbita maxima (Rimu)cmacpeB642
Cp4.1LG04g03170CmaCh11G018830Cucurbita maxima (Rimu)cmacpeB148
Cp4.1LG04g03170CmaCh18G003720Cucurbita maxima (Rimu)cmacpeB451
Cp4.1LG04g03170CmaCh20G002040Cucurbita maxima (Rimu)cmacpeB573
Cp4.1LG04g03170CmoCh18G003500Cucurbita moschata (Rifu)cmocpeB412
Cp4.1LG04g03170CmoCh11G019630Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g03170CmoCh02G000960Cucurbita moschata (Rifu)cmocpeB592
Cp4.1LG04g03170Cla013555Watermelon (97103) v1cpewmB668
Cp4.1LG04g03170Cla002264Watermelon (97103) v1cpewmB651
Cp4.1LG04g03170Csa7G048070Cucumber (Chinese Long) v2cpecuB690
Cp4.1LG04g03170MELO3C018728Melon (DHL92) v3.5.1cpemeB609
Cp4.1LG04g03170ClCG02G017710Watermelon (Charleston Gray)cpewcgB592
Cp4.1LG04g03170ClCG07G002820Watermelon (Charleston Gray)cpewcgB622
Cp4.1LG04g03170CSPI07G04710Wild cucumber (PI 183967)cpecpiB692
Cp4.1LG04g03170Lsi11G015660Bottle gourd (USVL1VR-Ls)cpelsiB526
Cp4.1LG04g03170Lsi10G009020Bottle gourd (USVL1VR-Ls)cpelsiB521
Cp4.1LG04g03170MELO3C018728.2Melon (DHL92) v3.6.1cpemedB721
Cp4.1LG04g03170CsaV3_7G004510Cucumber (Chinese Long) v3cpecucB0863
Cp4.1LG04g03170CsaV3_1G012350Cucumber (Chinese Long) v3cpecucB0812
Cp4.1LG04g03170Bhi10G000853Wax gourdcpewgoB0865
Cp4.1LG04g03170Bhi05G001627Wax gourdcpewgoB0844
Cp4.1LG04g03170CsGy7G004270Cucumber (Gy14) v2cgybcpeB964
Cp4.1LG04g03170Carg14625Silver-seed gourdcarcpeB0217
Cp4.1LG04g03170Carg19128Silver-seed gourdcarcpeB1015
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g03170Cp4.1LG09g08320Cucurbita pepo (Zucchini)cpecpeB056
Cp4.1LG04g03170Cp4.1LG05g14860Cucurbita pepo (Zucchini)cpecpeB492
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g03170Melon (DHL92) v3.6.1cpemedB714
Cp4.1LG04g03170Silver-seed gourdcarcpeB0047
Cp4.1LG04g03170Silver-seed gourdcarcpeB1223
Cp4.1LG04g03170Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG04g03170Cucurbita pepo (Zucchini)cpecpeB306
Cp4.1LG04g03170Cucumber (Gy14) v1cgycpeB0329
Cp4.1LG04g03170Cucurbita maxima (Rimu)cmacpeB537
Cp4.1LG04g03170Cucurbita moschata (Rifu)cmocpeB492
Cp4.1LG04g03170Cucurbita moschata (Rifu)cmocpeB524