CmaCh18G003720 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G003720
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Basic helix-loop-helix DNA-binding superfamily protein
Location	Cma_Chr18 : 2019299 .. 2020376 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAAAAAAAAAAAAAAAACGTTTCCAAAATAATATATATGTGATTTCACCATTTTTTTTCTTTTAAATAGTACAAGTTTTATTTTATTTTTAAAGGTTTTCGAGCTACCAACGATGGCGAACAATTTCATTCATTGTCCATCATCGACAAAGATCGACCGAAAGCTCATCGAGAGAAATAGAAGAGCAGAAATGAAGGCCCTTTTCTCAAGGCTCCATTCTCTTGTCCCAAATCAAAGCTCAACGGTTTCGTGTTTTTCTTTTTTTTTTTTTGTTGTTTCCTACTCTCATGAGAGAATTTGTTTGAGTAACTCCGAGAAAATTTTGAGCTGTTTGTAGGAAGCTGAAACAACACTACTAGATCAGCTAGAAAACGCCACAAATTACATAAAACAATTGAAGGAGAACGTGGAGAAATTGAAAGAGAAGAGAGAGAAGTTAATGGGATCACGAGAAGGTGAAACTAAAGCAAGATTATTGGTGCAAGTTGAAGCTCATCAAGTGGGTTCTTCGTTGGAGGTTCTCTTGACTACTGGATCTGATTATCAGTTTGTTTTAAATCAAATCCTCCAGCTGCTTCAAGAAAATGGAACTCAAATCGTTTATATCAATCACTCAACCGTTAAAGATCGAGTTTTTCACAAGATAATAGCTGAGGTAAGATAATACGTCAAATTTGTCTGATTAATTGCATGAATCTATATATATTATCCTCTAATTAATTACATAAATCAATTGTATTATGATGCTTGAAAACTAGATGGTGGGAGAAGGGACGACCTCCGAAAGCACTAAAGGTGAAAGGATCTGCGAGACGGTGAAGAAGTTTGTTTCACAATACAAAGATGTCCAATACAATGTTTAATGTTTTGTCTAAAACATCGAGTGACTGATCTTGAAGATTTATGATATCGTTTTGATTTGGTTGAATGCTTCAAAATCTTATGTTCAAATCTTTCTTTAGTTTGCACGATAAATAGACTTTTCAGGTTTCATCTCTTGGTATTCAATAAATTAGTTCTTTATTTTGATTTAATCAATAATTTCCATTTTATTTCCGTTAAACAAGAAACTCGAG

mRNA sequence

GTGAAAAAAAAAAAAAAAACGTTTCCAAAATAATATATATGTGATTTCACCATTTTTTTTCTTTTAAATAGTACAAGTTTTATTTTATTTTTAAAGGTTTTCGAGCTACCAACGATGGCGAACAATTTCATTCATTGTCCATCATCGACAAAGATCGACCGAAAGCTCATCGAGAGAAATAGAAGAGCAGAAATGAAGGCCCTTTTCTCAAGGCTCCATTCTCTTGTCCCAAATCAAAGCTCAACGGAAGCTGAAACAACACTACTAGATCAGCTAGAAAACGCCACAAATTACATAAAACAATTGAAGGAGAACGTGGAGAAATTGAAAGAGAAGAGAGAGAAGTTAATGGGATCACGAGAAGGTGAAACTAAAGCAAGATTATTGGTGCAAGTTGAAGCTCATCAAGTGGGTTCTTCGTTGGAGGTTCTCTTGACTACTGGATCTGATTATCAGTTTGTTTTAAATCAAATCCTCCAGCTGCTTCAAGAAAATGGAACTCAAATCGTTTATATCAATCACTCAACCGTTAAAGATCGAGTTTTTCACAAGATAATAGCTGAGATGGTGGGAGAAGGGACGACCTCCGAAAGCACTAAAGGTGAAAGGATCTGCGAGACGGTGAAGAAGTTTGTTTCACAATACAAAGATGTCCAATACAATGTTTAATGTTTTGTCTAAAACATCGAGTGACTGATCTTGAAGATTTATGATATCGTTTTGATTTGGTTGAATGCTTCAAAATCTTATGTTCAAATCTTTCTTTAGTTTGCACGATAAATAGACTTTTCAGGTTTCATCTCTTGGTATTCAATAAATTAGTTCTTTATTTTGATTTAATCAATAATTTCCATTTTATTTCCGTTAAACAAGAAACTCGAG

Coding sequence (CDS)

ATGGCGAACAATTTCATTCATTGTCCATCATCGACAAAGATCGACCGAAAGCTCATCGAGAGAAATAGAAGAGCAGAAATGAAGGCCCTTTTCTCAAGGCTCCATTCTCTTGTCCCAAATCAAAGCTCAACGGAAGCTGAAACAACACTACTAGATCAGCTAGAAAACGCCACAAATTACATAAAACAATTGAAGGAGAACGTGGAGAAATTGAAAGAGAAGAGAGAGAAGTTAATGGGATCACGAGAAGGTGAAACTAAAGCAAGATTATTGGTGCAAGTTGAAGCTCATCAAGTGGGTTCTTCGTTGGAGGTTCTCTTGACTACTGGATCTGATTATCAGTTTGTTTTAAATCAAATCCTCCAGCTGCTTCAAGAAAATGGAACTCAAATCGTTTATATCAATCACTCAACCGTTAAAGATCGAGTTTTTCACAAGATAATAGCTGAGATGGTGGGAGAAGGGACGACCTCCGAAAGCACTAAAGGTGAAAGGATCTGCGAGACGGTGAAGAAGTTTGTTTCACAATACAAAGATGTCCAATACAATGTTTAA

Protein sequence

MANNFIHCPSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNYIKQLKENVEKLKEKREKLMGSREGETKARLLVQVEAHQVGSSLEVLLTTGSDYQFVLNQILQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGERICETVKKFVSQYKDVQYNV

Homology

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BLAST of CmaCh18G003720 vs. TrEMBL
Match: A0A0A0LUL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G074400 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.3e-47
Identity = 110/196 (56.12%), Postives = 142/196 (72.45%), Query Frame = 1


Query: 3   NNFIHCPSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNYIK 62
           +N I C  + + +RK +ERNRR EMKALFS L+SL+PNQ+S EA  T+ DQLE+ATNYIK
Sbjct: 2   SNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIK 61

Query: 63  QLKENVEKLKEKREKLMGSR--------------EGETKARLLVQVEAHQVGSSLEVLLT 122
           +L++N++KLKEK+EKLMG                E ETK +L V V+AHQ+GSS+EV LT
Sbjct: 62  ELQKNIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFLT 121

Query: 123 TGSDYQFVLNQILQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGERICE 182
           TGSDY F L Q+L+LLQ+NG +I+ +N S   DRVFHKI A++ GEG       GERICE
Sbjct: 122 TGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILG-GGDGERICE 181

Query: 183 TVKKFVSQYKDVQYNV 185
           TVKK+VS+YKD + +V
Sbjct: 182 TVKKYVSEYKDGECSV 196

[Close]

BLAST of CmaCh18G003720 vs. TrEMBL
Match: A0A067G8S2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029713mg PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-28
Identity = 82/188 (43.62%), Postives = 123/188 (65.43%), Query Frame = 1


Query: 1   MANNFIHCPSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNY 60
           M NN    PSS++ DRK IERNRR +MKAL+S L+S+VP+Q   EA T+L DQL+ AT Y
Sbjct: 1   MENN----PSSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEA-TSLPDQLDEATKY 60

Query: 61  IKQLKENVEKLKEKREKLMG----------SREGETKARLLV-----QVEAHQVGSSLEV 120
           IK+L+ N+E++KE++E+LMG          S  G +   +       Q+E H++GS+LEV
Sbjct: 61  IKRLQTNLERMKERKERLMGIEKPDAAAATSSSGNSSGTITTGLRSPQIEIHEMGSALEV 120

Query: 121 LLTTGSDYQFVLNQILQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGER 174
           +LTTG D+QF+  + ++LL E G +IV  + + V+D +FH I ++ +G+ + S+     R
Sbjct: 121 VLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGD-SGSDHDASAR 180

[Close]

BLAST of CmaCh18G003720 vs. TrEMBL
Match: A0A059CDG5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00616 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.3e-28
Identity = 82/173 (47.40%), Postives = 114/173 (65.90%), Query Frame = 1


Query: 9   PSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNYIKQLKENV 68
           PSS+K DRKLIERNRR  MKAL+S+L+SLV + S TE  T+L DQL  ATNYIK+L+ N+
Sbjct: 5   PSSSKSDRKLIERNRRHHMKALYSQLNSLVHHHSPTEV-TSLPDQLHEATNYIKKLQINL 64

Query: 69  EKLKEKREKLMGSREGETK-------ARLLVQVEAHQVGSSLEVLLTTGSDYQFVLNQIL 128
           EK+KEK+E L+G  +  T        A    ++E HQ GSSL+V+L TG D+QF+ N ++
Sbjct: 65  EKMKEKKESLLGIAKMNTSMNNGMDVASNSPEIEIHQSGSSLQVILITGLDHQFMFNHVI 124

Query: 129 QLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGERICETVKKFV 175
            LL E+G +I+  + S ++D+ FH I  E+   G  + S    RI E ++K V
Sbjct: 125 SLLHEDGVKILNASFSVLEDKAFHSIHCEV---GDCAPSLDSARIYERLRKCV 173

[Close]

BLAST of CmaCh18G003720 vs. TrEMBL
Match: V4W8P1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016846mg PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.9e-28
Identity = 83/188 (44.15%), Postives = 121/188 (64.36%), Query Frame = 1


Query: 1   MANNFIHCPSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNY 60
           M NN    PSS++ DRK IERNRR +MKAL+S L+SLVP+Q   EA T+L DQL+ AT Y
Sbjct: 1   MENN----PSSSRTDRKTIERNRRNQMKALYSTLNSLVPHQRPMEA-TSLPDQLDEATKY 60

Query: 61  IKQLKENVEKLKEKREKLMG----------SREGETKARLLV-----QVEAHQVGSSLEV 120
           IK+L+ N+E++KE++E+LMG          S  G +   +       Q+E H++GS+LEV
Sbjct: 61  IKRLQTNLERMKERKERLMGIEKPDAAAATSSSGNSSGTITTGLRSPQIEIHEMGSALEV 120

Query: 121 LLTTGSDYQFVLNQILQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGER 174
           +LTTG D+QF+  + ++LL E G +IV  + + V+D +FH I +++   G  S+     R
Sbjct: 121 VLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSG--SDHDASAR 180

[Close]

BLAST of CmaCh18G003720 vs. TrEMBL
Match: A5C0F4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010916 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-27
Identity = 80/173 (46.24%), Postives = 113/173 (65.32%), Query Frame = 1


Query: 9   PSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNYIKQLKENV 68
           PSS++ DRK IERNRR  MK+L+S+L+SLVP+Q+S EA  TL DQL+ A NYIK+L+E +
Sbjct: 5   PSSSRTDRKTIERNRRNHMKSLYSKLNSLVPHQTSREA-ITLPDQLDEAANYIKRLQEKL 64

Query: 69  EKLKEKREKLMGSREGETKARLLV-------QVEAHQVGSSLEVLLTTGSDYQFVLNQIL 128
           EK+KE+++ LMG     T             Q++ H+ GS+LEV+L TG D+QF+ N+ +
Sbjct: 65  EKMKERKDNLMGFERPNTSPNSGAMVGLKPPQIDIHEKGSALEVVLITGLDFQFMFNETI 124

Query: 129 QLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGERICETVKKFV 175
           ++L E G +IV  + S V D VFH I A++ G      +    RI E +KKFV
Sbjct: 125 RVLHEEGAEIVNASFSVVDDTVFHTIHAQVEGPVLGHGAA---RISERLKKFV 173

[Close]

BLAST of CmaCh18G003720 vs. TAIR10
Match: AT4G20970.1 (AT4G20970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-18
Identity = 60/173 (34.68%), Postives = 98/173 (56.65%), Query Frame = 1


Query: 11  STKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNYIKQLKENVEK 70
           S  +DRK +E+NRR +MK+L+S L SL+P+ SSTE   TL DQL+ A NYIK+L+ NVEK
Sbjct: 11  SRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTEP-LTLPDQLDEAANYIKKLQVNVEK 70

Query: 71  LKEKREKLMGSREGE----------------TKARLLVQVEAHQVGSSLEVLLTTGSDYQ 130
            +E++  L+ +   E                +  R L ++E  + GS   + L T  +++
Sbjct: 71  KRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHK 130

Query: 131 FVLNQILQLL-QENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGERI 167
           F+  +I+++L +E G +I +  +S V D VFH +  ++      + S   ER+
Sbjct: 131 FMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEHDYGARSQIPERL 182

[Close]

BLAST of CmaCh18G003720 vs. TAIR10
Match: AT1G10585.1 (AT1G10585.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-08
Identity = 53/171 (30.99%), Postives = 87/171 (50.88%), Query Frame = 1


Query: 10  SSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNYIKQLKENVE 69
           SS +  R L E++RR  MK LFS L S V    S   +  +   ++ AT+Y+ QLKENV 
Sbjct: 13  SSLREQRNLREKDRRMRMKHLFSILSSHV----SPTRKLPVPHLIDQATSYMIQLKENVN 72

Query: 70  KLKEKREKLMGSREGE--TKARLLVQVEAHQVGSSLEVLLTTGSDYQFV-LNQILQLLQE 129
            LKEK+  L+    G     + LL ++      S++E+ L    + + V L++++ + +E
Sbjct: 73  YLKEKKRTLLQGELGNLYEGSFLLPKLSIRSRDSTIEMNLIMDLNMKRVMLHELVSIFEE 132

Query: 130 NGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGERICETVKKFVSQY 178
            G Q++  N   + DR  + IIA+ +    +       RI E V+K +  Y
Sbjct: 133 EGAQVMSANLQNLNDRTTYTIIAQAI---ISRIGIDPSRIEERVRKIIYGY 176

[Close]

BLAST of CmaCh18G003720 vs. TAIR10
Match: AT1G10586.1 (AT1G10586.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 7.1e-08
Identity = 47/149 (31.54%), Postives = 77/149 (51.68%), Query Frame = 1


Query: 10  SSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNYIKQLKENVE 69
           SS +  R L E+ RR  MK LFS L S V    S      +   ++ A +Y+ QLKE V 
Sbjct: 13  SSLREQRNLREKERRMRMKHLFSILSSHV----SPTRRLPVPQLIDQAVSYMIQLKEKVN 72

Query: 70  KLKEKREKLMGSREGETKAR-----LLVQVEAHQVGSSLEVLLTTGSDYQFV-LNQILQL 129
            L E + +++G   GE K R     LL ++    + S +E+ L    + + V L++++ +
Sbjct: 73  YLNEMKRRMLG---GEVKNRSEGSSLLPKLSIRSLDSIIEMNLVMDLNMKGVMLHKLVSV 132

Query: 130 LQENGTQIVYINHSTVKDRVFHKIIAEMV 153
            +E G Q++  N   + DR F+ IIA+ +
Sbjct: 133 FEEEGAQVMSANLQNLNDRTFYTIIAQAI 154

[Close]

BLAST of CmaCh18G003720 vs. TAIR10
Match: AT4G25400.1 (AT4G25400.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.3e-06
Identity = 43/146 (29.45%), Postives = 79/146 (54.11%), Query Frame = 1


Query: 13  KIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNYIKQLKENVEKLK 72
           K+  K IE+ RR EM +L++ L SL+P +   + + +  DQ++ A NYI  L+ N++ + 
Sbjct: 3   KLVHKEIEKRRRQEMASLYASLRSLLPLEF-IQGKRSTSDQVKGAVNYIDYLQRNIKDIN 62

Query: 73  EKREKLM---GSREGETKARLLVQVEAHQVGS----SLEVLLTTGSDYQFVLNQILQLLQ 132
            KR+ L+   G     +  +   ++  H V       +E++L   S  Q   + +LQ+L+
Sbjct: 63  SKRDDLVLLSGRSFRSSNEQEWNEISNHVVIRPCLVGIEIVL---SILQTPFSSVLQVLR 122

Query: 133 ENGTQIVYINHSTVKDRVFHKIIAEM 152
           E+G  ++    S+V DR+ H + AE+
Sbjct: 123 EHGLYVLGYICSSVNDRLIHTLQAEV 144

[Close]

BLAST of CmaCh18G003720 vs. NCBI nr
Match: gi|659068080|ref|XP_008442634.1| (PREDICTED: transcription factor ORG2-like [Cucumis melo])

HSP 1 Score: 201.4 bits (511), Expect = 1.3e-48
Identity = 111/198 (56.06%), Postives = 144/198 (72.73%), Query Frame = 1


Query: 3   NNFIHCPSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNYIK 62
           +N I C  + + DRK +ERNRR EMK+LFS L+SL+PN +S EA  T+ DQLE+ATNYIK
Sbjct: 37  SNPIRCQPTPQSDRKFVERNRRKEMKSLFSTLNSLLPNHTSREAPRTVPDQLEDATNYIK 96

Query: 63  QLKENVEKLKEKREKLMGSR----------------EGETKARLLVQVEAHQVGSSLEVL 122
           +L++N++KLKEK+E+LMG                  E ETK +LL+QV+AHQ+GSS+EV 
Sbjct: 97  ELQKNIQKLKEKKEELMGKNKMEEDEEAEGRRRRRFEHETKPKLLLQVKAHQIGSSVEVF 156

Query: 123 LTTGSDYQFVLNQILQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGERI 182
           LTTGSDY F+L Q+L+LLQ+NG +I+ +N S   DRVFHKI A++ GEG       GERI
Sbjct: 157 LTTGSDYHFILQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGIGPGD--GERI 216

Query: 183 CETVKKFVSQYKDVQYNV 185
           C+TVKKFVSQYKD Q +V
Sbjct: 217 CKTVKKFVSQYKDEQCSV 232

[Close]

BLAST of CmaCh18G003720 vs. NCBI nr
Match: gi|449457739|ref|XP_004146605.1| (PREDICTED: transcription factor bHLH118-like [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.9e-47
Identity = 110/196 (56.12%), Postives = 142/196 (72.45%), Query Frame = 1


Query: 3   NNFIHCPSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNYIK 62
           +N I C  + + +RK +ERNRR EMKALFS L+SL+PNQ+S EA  T+ DQLE+ATNYIK
Sbjct: 2   SNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIK 61

Query: 63  QLKENVEKLKEKREKLMGSR--------------EGETKARLLVQVEAHQVGSSLEVLLT 122
           +L++N++KLKEK+EKLMG                E ETK +L V V+AHQ+GSS+EV LT
Sbjct: 62  ELQKNIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFLT 121

Query: 123 TGSDYQFVLNQILQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGERICE 182
           TGSDY F L Q+L+LLQ+NG +I+ +N S   DRVFHKI A++ GEG       GERICE
Sbjct: 122 TGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILG-GGDGERICE 181

Query: 183 TVKKFVSQYKDVQYNV 185
           TVKK+VS+YKD + +V
Sbjct: 182 TVKKYVSEYKDGECSV 196

[Close]

BLAST of CmaCh18G003720 vs. NCBI nr
Match: gi|743900204|ref|XP_011043394.1| (PREDICTED: uncharacterized protein LOC105138874 [Populus euphratica])

HSP 1 Score: 135.6 bits (340), Expect = 8.9e-29
Identity = 85/184 (46.20%), Postives = 121/184 (65.76%), Query Frame = 1


Query: 1   MANNFIHCPSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNY 60
           M NN    PSS++ DRK IERNRR +MKAL+S+L+SLVP+QSS E   +L DQL++A +Y
Sbjct: 1   MENN----PSSSRTDRKTIERNRRNQMKALYSQLNSLVPHQSSREPVPSLPDQLDDAASY 60

Query: 61  IKQLKENVEKLKEKREKLMG----------SREGETKARLLVQVEAHQVGSSLEVLLTTG 120
           IK+L+ N+E++KEK+E LMG          S  G T  R   Q+E  + GS+LEV+L TG
Sbjct: 61  IKRLQTNLERMKEKKENLMGTERTNYASMSSCNGTTGLR-SPQIEVRETGSTLEVVLITG 120

Query: 121 SDYQFVLNQILQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGERICETV 175
            D QF+ N+ +++L E G +I+  N S V+D VFH I +++   G ++ ST   RI + +
Sbjct: 121 LDSQFMFNETIRVLHEEGAEIINANFSVVEDTVFHTIHSKV---GDSAPSTGAARISQRL 176

[Close]

BLAST of CmaCh18G003720 vs. NCBI nr
Match: gi|568826862|ref|XP_006467787.1| (PREDICTED: uncharacterized protein LOC102624080 isoform X1 [Citrus sinensis])

HSP 1 Score: 134.0 bits (336), Expect = 2.6e-28
Identity = 82/188 (43.62%), Postives = 123/188 (65.43%), Query Frame = 1


Query: 1   MANNFIHCPSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNY 60
           M NN    PSS++ DRK IERNRR +MKAL+S L+S+VP+Q   EA T+L DQL+ AT Y
Sbjct: 1   MENN----PSSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEA-TSLPDQLDEATKY 60

Query: 61  IKQLKENVEKLKEKREKLMG----------SREGETKARLLV-----QVEAHQVGSSLEV 120
           IK+L+ N+E++KE++E+LMG          S  G +   +       Q+E H++GS+LEV
Sbjct: 61  IKRLQTNLERMKERKERLMGIEKPDAAAATSSSGNSSGTITTGLRSPQIEIHEMGSALEV 120

Query: 121 LLTTGSDYQFVLNQILQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGER 174
           +LTTG D+QF+  + ++LL E G +IV  + + V+D +FH I ++ +G+ + S+     R
Sbjct: 121 VLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGD-SGSDHDASAR 180

[Close]

BLAST of CmaCh18G003720 vs. NCBI nr
Match: gi|694323703|ref|XP_009352909.1| (PREDICTED: transcription factor bHLH55-like isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 134.0 bits (336), Expect = 2.6e-28
Identity = 82/185 (44.32%), Postives = 122/185 (65.95%), Query Frame = 1


Query: 8   CPSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNYIKQLKEN 67
           CPSS++ DRK IE+NRR +MKALFS+L+SLVP++ S EA  +L DQL++A NYIK+L+ N
Sbjct: 4   CPSSSRTDRKTIEKNRRNQMKALFSKLNSLVPHRRSREA--SLPDQLDDAVNYIKKLRTN 63

Query: 68  VEKLKEKREKLMGSR-----------------EGETKARLLVQVEAHQVGSSLEVLLTTG 127
           +EKL+EK+++LMG                   EG   + L   VE H++GS+LEVL+ TG
Sbjct: 64  LEKLREKKDRLMGIEKSSHCNAGFGRSGGPITEGLNSSPL---VEIHEMGSALEVLMITG 123

Query: 128 SDYQFVLNQILQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGERICETV 176
            DYQF+ N+ +++LQE G  IV  + S V+D +FH I +++    + +  +   RI + +
Sbjct: 124 LDYQFMFNESIRVLQEEGADIVNASFSVVEDTIFHTIHSKV--RESAAPGSVAARISKRL 181

The following BLAST results are available for this feature:

BLAST of CmaCh18G003720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh18G003720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUL3_CUCSA	1.3e-47	56.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G074400 PE=4 SV=1	[more]
A0A067G8S2_CITSI	1.8e-28	43.62	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029713mg PE=4 SV=1	[more]
A0A059CDG5_EUCGR	5.3e-28	47.40	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00616 PE=4 SV=1	[more]
V4W8P1_9ROSI	6.9e-28	44.15	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016846mg PE=4 SV=1	[more]
A5C0F4_VITVI	1.2e-27	46.24	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010916 PE=4 SV=1	[more]

BLAST of CmaCh18G003720 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20970.1	2.6e-18	34.68	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10585.1	3.2e-08	30.99	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10586.1	7.1e-08	31.54	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G25400.1	1.3e-06	29.45	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of CmaCh18G003720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068080\|ref\|XP_008442634.1\|	1.3e-48	56.06	PREDICTED: transcription factor ORG2-like [Cucumis melo]	[more]
gi\|449457739\|ref\|XP_004146605.1\|	1.9e-47	56.12	PREDICTED: transcription factor bHLH118-like [Cucumis sativus]	[more]
gi\|743900204\|ref\|XP_011043394.1\|	8.9e-29	46.20	PREDICTED: uncharacterized protein LOC105138874 [Populus euphratica]	[more]
gi\|568826862\|ref\|XP_006467787.1\|	2.6e-28	43.62	PREDICTED: uncharacterized protein LOC102624080 isoform X1 [Citrus sinensis]	[more]
gi\|694323703\|ref\|XP_009352909.1\|	2.6e-28	44.32	PREDICTED: transcription factor bHLH55-like isoform X2 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom
IPR015660	MASH1/Ascl1a-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G003720.1	CmaCh18G003720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 15..79 score: 7.5
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 17..64 score: 6.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 17..70 score: 7.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 11..64 score: 11
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 10..80 score: 1.96
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 9..174 score: 4.7
None	No IPR available	unknown	Coil	Coil	coord: 47..81 scor
None	No IPR available	PANTHER	PTHR13935:SF46	BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEIN	coord: 9..174 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G003720	Cucsa.126730	Cucumber (Gy14) v1	cgycmaB0338
CmaCh18G003720	Cla019510	Watermelon (97103) v1	cmawmB367
CmaCh18G003720	Csa7G048070	Cucumber (Chinese Long) v2	cmacuB426
CmaCh18G003720	Csa1G074400	Cucumber (Chinese Long) v2	cmacuB391
CmaCh18G003720	MELO3C002608	Melon (DHL92) v3.5.1	cmameB364
CmaCh18G003720	CSPI07G04710	Wild cucumber (PI 183967)	cmacpiB429
CmaCh18G003720	CSPI01G12160	Wild cucumber (PI 183967)	cmacpiB395
CmaCh18G003720	CmoCh18G003500	Cucurbita moschata (Rifu)	cmacmoB407
CmaCh18G003720	Lsi02G007580	Bottle gourd (USVL1VR-Ls)	cmalsiB369
CmaCh18G003720	Cp4.1LG04g03170	Cucurbita pepo (Zucchini)	cmacpeB451
CmaCh18G003720	Cp4.1LG09g08320	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G003720	MELO3C002608.2	Melon (DHL92) v3.6.1	cmamedB423
CmaCh18G003720	CsaV3_1G012350	Cucumber (Chinese Long) v3	cmacucB0465
CmaCh18G003720	CsaV3_7G004510	Cucumber (Chinese Long) v3	cmacucB0511
CmaCh18G003720	Cla97C03G057400	Watermelon (97103) v2	cmawmbB413
CmaCh18G003720	Bhi08G001304	Wax gourd	cmawgoB0523
CmaCh18G003720	BhiUN316G1	Wax gourd	cmawgoB0518
CmaCh18G003720	CsGy1G012180	Cucumber (Gy14) v2	cgybcmaB086
CmaCh18G003720	Carg14624	Silver-seed gourd	carcmaB0198
CmaCh18G003720	Carg19128	Silver-seed gourd	carcmaB1007

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh18G003720	CmaCh11G018830	Cucurbita maxima (Rimu)	cmacmaB140

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G003720	Melon (DHL92) v3.6.1	cmamedB441
CmaCh18G003720	Silver-seed gourd	carcmaB0908
CmaCh18G003720	Silver-seed gourd	carcmaB1298
CmaCh18G003720	Cucumber (Chinese Long) v3	cmacucB0494
CmaCh18G003720	Cucumber (Chinese Long) v3	cmacucB0506
CmaCh18G003720	Watermelon (97103) v2	cmawmbB397
CmaCh18G003720	Watermelon (97103) v2	cmawmbB410
CmaCh18G003720	Wax gourd	cmawgoB0517
CmaCh18G003720	Wax gourd	cmawgoB0547
CmaCh18G003720	Cucurbita maxima (Rimu)	cmacmaB043
CmaCh18G003720	Cucurbita maxima (Rimu)	cmacmaB216
CmaCh18G003720	Cucurbita maxima (Rimu)	cmacmaB392
CmaCh18G003720	Cucurbita maxima (Rimu)	cmacmaB394
CmaCh18G003720	Cucurbita maxima (Rimu)	cmacmaB413
CmaCh18G003720	Cucumber (Gy14) v1	cgycmaB0037
CmaCh18G003720	Cucurbita moschata (Rifu)	cmacmoB398
CmaCh18G003720	Cucurbita moschata (Rifu)	cmacmoB385
CmaCh18G003720	Cucurbita moschata (Rifu)	cmacmoB430
CmaCh18G003720	Wild cucumber (PI 183967)	cmacpiB426
CmaCh18G003720	Cucumber (Chinese Long) v2	cmacuB422
CmaCh18G003720	Melon (DHL92) v3.5.1	cmameB381
CmaCh18G003720	Watermelon (Charleston Gray)	cmawcgB340
CmaCh18G003720	Watermelon (Charleston Gray)	cmawcgB344
CmaCh18G003720	Watermelon (97103) v1	cmawmB379
CmaCh18G003720	Watermelon (97103) v1	cmawmB401
CmaCh18G003720	Cucurbita pepo (Zucchini)	cmacpeB437
CmaCh18G003720	Cucurbita pepo (Zucchini)	cmacpeB438
CmaCh18G003720	Cucurbita pepo (Zucchini)	cmacpeB454
CmaCh18G003720	Bottle gourd (USVL1VR-Ls)	cmalsiB368