Csa1G074400 (gene) Cucumber (Chinese Long) v2

NameCsa1G074400
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionHelix-loop-helix DNA-binding; contains IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)
LocationChr1 : 7628456 .. 7630567 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAGAGAAGAAGAGAAGAAGATCTTTGTGAAGGGGTTTTCTGAAAAGCTCTCAATAATGTCCAACCCTATCCGTTGTCAACCAACTCCACAAAGCAATCGAAAATTCGTCGAAAGAAATCGAAGAAAAGAAATGAAAGCCCTTTTCTCCACACTCAATTCTCTTCTTCCCAATCAAACCTCAATGGTTTAATTTCTTTCTCTCTGTGTTTTTCTTTTCCATATATATATATATTTTTTTTTGTTTCCAATAACCCCAAGAAAAAAGATCATGATTGCTAAATGTTTGTGTTCAGGAAGCTCCAAGAACAGTGCCGGATCAACTTGAAGATGCGACAAATTACATAAAAGAATTACAAAAGAACATAAAGAAATTGAAAGAGAAGAAAGAGAAGCTAATGGGAATGGAAGAAGATGAAGAAGCAGAAGGAAGAAGAAGAAGAAGAGGATATGAAGATGAAACAAAACCAAAATTATCGGTTCATGTTAAAGCTCATCAAATCGGTTCTTCAGTGGAAGTGTTTTTGACCACTGGATCAGACTATCACTTTAATCTTCAACAAGTGCTTCGACTTCTTCAAGATAATGGAGCTGAGATCCTCAATGTCAATCAGTCCATGTTCACTGATCGGGTTTTTCATAAGATAACGGCTCAGGTAATTTATTATTATCTCATTATGTCTCGTAAATAATTCAGGTCTTCTTTTTGTTTTTGGAGTTTTAAATTTACTTGTAGCTCTCAACTTCCATTATTGTTGGCATTTTTTTTGGATTTTTTCAAAATTCGGAAGAATTGAATTAGGTATGAAAATTTCAAAAATAAAAAGAAACTGCAATTTTAGTATTCAAAACTTGGTTTGGTTTTTGAAAACTAGGGTTTTCTTAAGCTAAGAGATAAAATGAAACGAACAAAATGGATAATGATGTTAACATGAACTAAAATTGATAAGTTTTTTAGGGTCATAAACATTATCTTTGATTTTGAGTTCATCATCCTTCCTTTTATTTAAATTGATAGGTGACTTTTGGTTAGTGGATTATGAGTCAATCACTTCCAAAATAGTTATCTAATTGAGTTTATGTATAAAATACTCCGTCGGTTAACTATTTTTTATTTTTTAAAATCTTAAATATTAGTACAACAGATGAGAGTCTTTTATTAGTTTGTTAATAAAACAAACAATATGTTTTGAATTTTCTTTATTTAAAAAATAAAAAAAAAAGAAATTAATTATCAAACACATTTAAAAAAAAATAATTTTCGAAAACAGAAAATAGAAAAATACATAGACTAACAAACAAAGCCTTTAGTTAAATCATTATTTCTCAAGTCGAAAATATAATTACTAATTGAGTAATAACTATCTCTTGAAACCAAACATAATGATGAAAAATCAACACTAGCTCTAAACAATTGAAAATCATTTTTTAAGAGTTTTAATACCAAACATAAATTTAATTGTTTTAGAATTTTTAGAGAAATTATAATTTAAATTGATGAACCAACTATTAATTATTAATTTAGGGTGTGAAGCGTTTATTTTCTCAAAATATGGTTAAAAAATAGATAATAAAGAAAAGAAACAACCTCTAGTTCTTTAAATTAAAGTAAAAAAAAATCAAATAGCCCTCAAATTTGAAATATTGAATTAAAAATATTTGCTTCATTGCTAGAATTTATAAGTTAGAATTAAGAAGAAAAAAAATGTAGTTGAAAGTTAGAATTAAAAAAGCCAAAAATAATAATAAGAACAACAACAATAATGTAGTTTTAACAGAAGACAAAAAAAATAGTTGCAAACAAGTTGATGTTAAAATGTGGAAGAAGAAGAAAGAGAAGATGATGACGACGATGATGATGATATATGTATTGAAAAATTGTAGGTGGATGGAGAAGGAATATTAGGGGGAGGAGATGGTGAAAGGATTTGTGAGACAGTGAAGAAATATGTTTCAGAGTACAAAGATGGGGAATGCAGTGTTGAAGGAAATGGTGGTGAAGATTTCTGAATCCATTTATTCTACTCTCTCTCTTTCTTTTATGGATAATGCTTCAAATAAACCCATCTTCCCATTATTCACTGCTTGTTATATTATAATCTCTTTTTTTTT

mRNA sequence

ATGTCCAACCCTATCCGTTGTCAACCAACTCCACAAAGCAATCGAAAATTCGTCGAAAGAAATCGAAGAAAAGAAATGAAAGCCCTTTTCTCCACACTCAATTCTCTTCTTCCCAATCAAACCTCAATGGAAGCTCCAAGAACAGTGCCGGATCAACTTGAAGATGCGACAAATTACATAAAAGAATTACAAAAGAACATAAAGAAATTGAAAGAGAAGAAAGAGAAGCTAATGGGAATGGAAGAAGATGAAGAAGCAGAAGGAAGAAGAAGAAGAAGAGGATATGAAGATGAAACAAAACCAAAATTATCGGTTCATGTTAAAGCTCATCAAATCGGTTCTTCAGTGGAAGTGTTTTTGACCACTGGATCAGACTATCACTTTAATCTTCAACAAGTGCTTCGACTTCTTCAAGATAATGGAGCTGAGATCCTCAATGTCAATCAGTCCATGTTCACTGATCGGGTTTTTCATAAGATAACGGCTCAGGTGGATGGAGAAGGAATATTAGGGGGAGGAGATGGTGAAAGGATTTGTGAGACAGTGAAGAAATATGTTTCAGAGTACAAAGATGGGGAATGCAGTGTTGAAGGAAATGGTGGTGAAGATTTCTGA

Coding sequence (CDS)

ATGTCCAACCCTATCCGTTGTCAACCAACTCCACAAAGCAATCGAAAATTCGTCGAAAGAAATCGAAGAAAAGAAATGAAAGCCCTTTTCTCCACACTCAATTCTCTTCTTCCCAATCAAACCTCAATGGAAGCTCCAAGAACAGTGCCGGATCAACTTGAAGATGCGACAAATTACATAAAAGAATTACAAAAGAACATAAAGAAATTGAAAGAGAAGAAAGAGAAGCTAATGGGAATGGAAGAAGATGAAGAAGCAGAAGGAAGAAGAAGAAGAAGAGGATATGAAGATGAAACAAAACCAAAATTATCGGTTCATGTTAAAGCTCATCAAATCGGTTCTTCAGTGGAAGTGTTTTTGACCACTGGATCAGACTATCACTTTAATCTTCAACAAGTGCTTCGACTTCTTCAAGATAATGGAGCTGAGATCCTCAATGTCAATCAGTCCATGTTCACTGATCGGGTTTTTCATAAGATAACGGCTCAGGTGGATGGAGAAGGAATATTAGGGGGAGGAGATGGTGAAAGGATTTGTGAGACAGTGAAGAAATATGTTTCAGAGTACAAAGATGGGGAATGCAGTGTTGAAGGAAATGGTGGTGAAGATTTCTGA

Protein sequence

MSNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQKNIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFLTTGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICETVKKYVSEYKDGECSVEGNGGEDF*
BLAST of Csa1G074400 vs. Swiss-Prot
Match: BH118_ARATH (Transcription factor bHLH118 OS=Arabidopsis thaliana GN=BHLH118 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.2e-11
Identity = 49/159 (30.82%), Postives = 82/159 (51.57%), Query Frame = 1

Query: 16  KFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQKNIKKLKEKKE 75
           K +E+ RR+EM +L+++L SLLP +  ++  R+  DQ++ A NYI  LQ+NIK +  K++
Sbjct: 7   KEIEKRRRQEMASLYASLRSLLPLEF-IQGKRSTSDQVKGAVNYIDYLQRNIKDINSKRD 66

Query: 76  KLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFLTTGSDYHFNLQQVLR 135
            L+ +       GR  R   E E   ++S HV        +E+ L   S        VL+
Sbjct: 67  DLVLL------SGRSFRSSNEQEWN-EISNHVVIRPCLVGIEIVL---SILQTPFSSVLQ 126

Query: 136 LLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGD 175
           +L+++G  +L    S   DR+ H + A+V+   ++   D
Sbjct: 127 VLREHGLYVLGYICSSVNDRLIHTLQAEVNDLALIDLAD 154

BLAST of Csa1G074400 vs. Swiss-Prot
Match: BH036_ARATH (Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-10
Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 1

Query: 19  ERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQKNIKKLKEKKEKLM 78
           ER RR+EM +L+++L SLLP    ++  R+  DQ+ +A NYIK LQ+ IK+L  +++ LM
Sbjct: 10  ERQRRQEMASLYASLRSLLPLHF-IKGKRSTSDQVNEAVNYIKYLQRKIKELSVRRDDLM 69

Query: 79  GMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFLTT---GSDYHFNLQQVLR 138
            +       G       ED        HV   Q    VE+ L++   G    F+   VL+
Sbjct: 70  VLSRG-SLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPRFS--SVLQ 129

Query: 139 LLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGIL 171
           +L + G  +LN   S+  DR+ + I A+V+   ++
Sbjct: 130 VLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALM 160

BLAST of Csa1G074400 vs. Swiss-Prot
Match: BH126_ARATH (Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-10
Identity = 45/164 (27.44%), Postives = 75/164 (45.73%), Query Frame = 1

Query: 18  VERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQKNIKKLKEKKEKL 77
           +ER RR+EM  LF+TL + LP +  ++  R V D +  A N+IK+ +  IK+L  ++++L
Sbjct: 50  IERQRRQEMATLFATLRTHLPLK-YIKGKRAVSDHVNGAVNFIKDTEARIKELSARRDEL 109

Query: 78  MGMEEDEEAEGRRRRRGYEDETKP-----------KLSVHVKAHQIGSSVEVFLTTGSDY 137
                      R   +GY+    P             +V V+ H  G  V V   +    
Sbjct: 110 ----------SRETGQGYKSNPDPGKTGSDVGKSEPATVMVQPHVSGLEVVVSSNSSGPE 169

Query: 138 HFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGIL 171
              L +VL  +Q+ G E+++   +   DR+ H I  +V+  G +
Sbjct: 170 ALPLSKVLETIQEKGLEVMSSFTTRVNDRLMHTIQVEVNSFGCI 202

BLAST of Csa1G074400 vs. Swiss-Prot
Match: ORG2_ARATH (Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.7e-09
Identity = 45/158 (28.48%), Postives = 87/158 (55.06%), Query Frame = 1

Query: 14  NRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQKNIKKLKEK 73
           N    ER+RRK++  LFS+L S LP  +      ++P+ +  +  YI ELQ+ +K+L +K
Sbjct: 75  NHNASERDRRKKINTLFSSLRSCLP-ASDQSKKLSIPETVSKSLKYIPELQQQVKRLIQK 134

Query: 74  KEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVH----VKAHQIG-SSVEVFLTTGSDYHF 133
           KE+++         G+R    Y D+ +PK        V A ++G + V V +++   ++F
Sbjct: 135 KEEIL-----VRVSGQRDFELY-DKQQPKAVASYLSTVSATRLGDNEVMVQVSSSKIHNF 194

Query: 134 NLQQVLRLLQDNGAEILNVNQSMFT-DRVFHKITAQVD 166
           ++  VL  ++++G  +++V+ S    +R+F+ +  QV+
Sbjct: 195 SISNVLGGIEEDGFVLVDVSSSRSQGERLFYTLHLQVE 225

BLAST of Csa1G074400 vs. Swiss-Prot
Match: BH055_ARATH (Transcription factor bHLH55 OS=Arabidopsis thaliana GN=BHLH55 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.7e-08
Identity = 48/164 (29.27%), Postives = 82/164 (50.00%), Query Frame = 1

Query: 12  QSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQKNIKKLK 71
           ++  K +ER RR+E  +LF  L  LLP+Q  ++  R+  D + +A NYIK+LQK IK++ 
Sbjct: 76  RAKHKELERQRRQENTSLFKILRYLLPSQY-IKGKRSSADHVLEAVNYIKDLQKKIKEVS 135

Query: 72  EKKEKLMGMEEDEEAEGRRRRRGYEDET-----KPKLSVHVKAHQIGSSVEVFLTTGSDY 131
           EK++++        + G    R     T        ++V V+   IG  +E+ ++  + +
Sbjct: 136 EKRDRIKRSITHPSSRGEFSIRSLASSTCSCVGDTNIAVVVRPCLIG--LEIVVSCCNRH 195

Query: 132 HFNLQQVLRLL-QDNGAEILNVNQSMFTDRVFHKITAQVDGEGI 170
              L  VL+LL Q+    I++   +       H I ++V+ EGI
Sbjct: 196 ESCLSSVLQLLAQEQCFNIVSCISTRLHQGFIHTIASEVE-EGI 235

BLAST of Csa1G074400 vs. TrEMBL
Match: A0A0A0LUL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G074400 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 3.8e-112
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1

Query: 1   MSNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYI 60
           MSNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYI
Sbjct: 1   MSNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYI 60

Query: 61  KELQKNIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFL 120
           KELQKNIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFL
Sbjct: 61  KELQKNIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFL 120

Query: 121 TTGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICE 180
           TTGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICE
Sbjct: 121 TTGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICE 180

Query: 181 TVKKYVSEYKDGECSVEGNGGEDF 205
           TVKKYVSEYKDGECSVEGNGGEDF
Sbjct: 181 TVKKYVSEYKDGECSVEGNGGEDF 204

BLAST of Csa1G074400 vs. TrEMBL
Match: A5C0F4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010916 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.4e-31
Identity = 83/185 (44.86%), Postives = 120/185 (64.86%), Query Frame = 1

Query: 2   SNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIK 61
           SNP     + +++RK +ERNRR  MK+L+S LNSL+P+QTS EA  T+PDQL++A NYIK
Sbjct: 3   SNP----SSSRTDRKTIERNRRNHMKSLYSKLNSLVPHQTSREAI-TLPDQLDEAANYIK 62

Query: 62  ELQKNIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFLT 121
            LQ+ ++K+KE+K+ LMG E    +       G +    P++ +H K    GS++EV L 
Sbjct: 63  RLQEKLEKMKERKDNLMGFERPNTSPNSGAMVGLKP---PQIDIHEK----GSALEVVLI 122

Query: 122 TGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICET 181
           TG D+ F   + +R+L + GAEI+N + S+  D VFH I AQV+G  +LG G   RI E 
Sbjct: 123 TGLDFQFMFNETIRVLHEEGAEIVNASFSVVDDTVFHTIHAQVEGP-VLGHG-AARISER 173

Query: 182 VKKYV 187
           +KK+V
Sbjct: 183 LKKFV 173

BLAST of Csa1G074400 vs. TrEMBL
Match: A0A067G8S2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029713mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.8e-29
Identity = 72/175 (41.14%), Postives = 114/175 (65.14%), Query Frame = 1

Query: 12  QSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQKNIKKLK 71
           +++RK +ERNRR +MKAL+STLNS++P+Q  MEA  ++PDQL++AT YIK LQ N++++K
Sbjct: 9   RTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEAT-SLPDQLDEATKYIKRLQTNLERMK 68

Query: 72  EKKEKLMGMEEDEEAEGRRRRRGYEDETKPKL-SVHVKAHQIGSSVEVFLTTGSDYHFNL 131
           E+KE+LMG+E+ + A                L S  ++ H++GS++EV LTTG D+ F  
Sbjct: 69  ERKERLMGIEKPDAAAATSSSGNSSGTITTGLRSPQIEIHEMGSALEVVLTTGLDFQFMF 128

Query: 132 QQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICETVKKY 186
            + +RLL + G EI+N + ++  D +FH I ++  G+         RI E +KK+
Sbjct: 129 IETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182

BLAST of Csa1G074400 vs. TrEMBL
Match: V4W8P1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016846mg PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.1e-29
Identity = 73/175 (41.71%), Postives = 115/175 (65.71%), Query Frame = 1

Query: 12  QSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQKNIKKLK 71
           +++RK +ERNRR +MKAL+STLNSL+P+Q  MEA  ++PDQL++AT YIK LQ N++++K
Sbjct: 9   RTDRKTIERNRRNQMKALYSTLNSLVPHQRPMEAT-SLPDQLDEATKYIKRLQTNLERMK 68

Query: 72  EKKEKLMGMEEDEEAEGRRRRRGYEDETKPKL-SVHVKAHQIGSSVEVFLTTGSDYHFNL 131
           E+KE+LMG+E+ + A                L S  ++ H++GS++EV LTTG D+ F  
Sbjct: 69  ERKERLMGIEKPDAAAATSSSGNSSGTITTGLRSPQIEIHEMGSALEVVLTTGLDFQFMF 128

Query: 132 QQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICETVKKY 186
            + +RLL + G EI+N + ++  D +FH I +++ G+         RI E +KK+
Sbjct: 129 IETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKI-GDSGSDHDASARISERLKKF 181

BLAST of Csa1G074400 vs. TrEMBL
Match: A0A067GKY0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029713mg PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.3e-29
Identity = 72/175 (41.14%), Postives = 115/175 (65.71%), Query Frame = 1

Query: 12  QSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQKNIKKLK 71
           +++RK +ERNRR +MKAL+STLNS++P+Q  MEA  ++PDQL++AT YIK LQ N++++K
Sbjct: 9   RTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEAT-SLPDQLDEATKYIKRLQTNLERMK 68

Query: 72  EKKEKLMGMEEDEEAEGRRRRRGYEDETKPKL-SVHVKAHQIGSSVEVFLTTGSDYHFNL 131
           E+KE+LMG+E+ + A                L S  ++ H++GS++EV LTTG D+ F  
Sbjct: 69  ERKERLMGIEKPDAAAATSSSGNSSGTITTGLRSPQIEIHEMGSALEVVLTTGLDFQFMF 128

Query: 132 QQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICETVKKY 186
            + +RLL + G EI+N + ++  D +FH I +++ G+         RI E +KK+
Sbjct: 129 IETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKI-GDSGSDHDASARISERLKKF 181

BLAST of Csa1G074400 vs. TAIR10
Match: AT4G20970.1 (AT4G20970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 101.7 bits (252), Expect = 5.6e-22
Identity = 63/177 (35.59%), Postives = 101/177 (57.06%), Query Frame = 1

Query: 14  NRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQKNIKKLKEK 73
           +RK VE+NRR +MK+L+S L SLLP+ +S E P T+PDQL++A NYIK+LQ N++K +E+
Sbjct: 15  DRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKLQVNVEKKRER 74

Query: 74  KEKLMGME--EDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFLTTGSDYHFNLQ 133
           K  L+     E   + G        D + P+    ++  + GS   +FL T  ++ F   
Sbjct: 75  KRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHKFMFC 134

Query: 134 QVLRLL-QDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICETVKKYVS 188
           +++R+L ++ GAEI +   S+  D VFH +  +V+       G   +I E ++K V+
Sbjct: 135 EIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEHDY---GARSQIPERLEKIVN 187

BLAST of Csa1G074400 vs. TAIR10
Match: AT4G25400.1 (AT4G25400.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12
Identity = 49/159 (30.82%), Postives = 82/159 (51.57%), Query Frame = 1

Query: 16  KFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQKNIKKLKEKKE 75
           K +E+ RR+EM +L+++L SLLP +  ++  R+  DQ++ A NYI  LQ+NIK +  K++
Sbjct: 7   KEIEKRRRQEMASLYASLRSLLPLEF-IQGKRSTSDQVKGAVNYIDYLQRNIKDINSKRD 66

Query: 76  KLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFLTTGSDYHFNLQQVLR 135
            L+ +       GR  R   E E   ++S HV        +E+ L   S        VL+
Sbjct: 67  DLVLL------SGRSFRSSNEQEWN-EISNHVVIRPCLVGIEIVL---SILQTPFSSVLQ 126

Query: 136 LLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGD 175
           +L+++G  +L    S   DR+ H + A+V+   ++   D
Sbjct: 127 VLREHGLYVLGYICSSVNDRLIHTLQAEVNDLALIDLAD 154

BLAST of Csa1G074400 vs. TAIR10
Match: AT5G51780.1 (AT5G51780.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-11
Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 1

Query: 19  ERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQKNIKKLKEKKEKLM 78
           ER RR+EM +L+++L SLLP    ++  R+  DQ+ +A NYIK LQ+ IK+L  +++ LM
Sbjct: 10  ERQRRQEMASLYASLRSLLPLHF-IKGKRSTSDQVNEAVNYIKYLQRKIKELSVRRDDLM 69

Query: 79  GMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFLTT---GSDYHFNLQQVLR 138
            +       G       ED        HV   Q    VE+ L++   G    F+   VL+
Sbjct: 70  VLSRG-SLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPRFS--SVLQ 129

Query: 139 LLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGIL 171
           +L + G  +LN   S+  DR+ + I A+V+   ++
Sbjct: 130 VLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALM 160

BLAST of Csa1G074400 vs. TAIR10
Match: AT4G25410.1 (AT4G25410.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-11
Identity = 45/164 (27.44%), Postives = 75/164 (45.73%), Query Frame = 1

Query: 18  VERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQKNIKKLKEKKEKL 77
           +ER RR+EM  LF+TL + LP +  ++  R V D +  A N+IK+ +  IK+L  ++++L
Sbjct: 50  IERQRRQEMATLFATLRTHLPLK-YIKGKRAVSDHVNGAVNFIKDTEARIKELSARRDEL 109

Query: 78  MGMEEDEEAEGRRRRRGYEDETKP-----------KLSVHVKAHQIGSSVEVFLTTGSDY 137
                      R   +GY+    P             +V V+ H  G  V V   +    
Sbjct: 110 ----------SRETGQGYKSNPDPGKTGSDVGKSEPATVMVQPHVSGLEVVVSSNSSGPE 169

Query: 138 HFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGIL 171
              L +VL  +Q+ G E+++   +   DR+ H I  +V+  G +
Sbjct: 170 ALPLSKVLETIQEKGLEVMSSFTTRVNDRLMHTIQVEVNSFGCI 202

BLAST of Csa1G074400 vs. TAIR10
Match: AT3G56970.1 (AT3G56970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 4.9e-10
Identity = 45/158 (28.48%), Postives = 86/158 (54.43%), Query Frame = 1

Query: 14  NRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQKNIKKLKEK 73
           N    ER+RRK++  LFS+L S LP  +      ++P+ +  +  YI ELQ+ +K+L +K
Sbjct: 75  NHNASERDRRKKINTLFSSLRSCLP-ASDQSKKLSIPETVSKSLKYIPELQQQVKRLIQK 134

Query: 74  KEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVH----VKAHQIG-SSVEVFLTTGSDYHF 133
           KE+++         G+R    Y D+ +PK        V A ++G + V V +++   ++F
Sbjct: 135 KEEIL-----VRVSGQRDFELY-DKQQPKAVASYLSTVSATRLGDNEVMVQVSSSKIHNF 194

Query: 134 NLQQVLRLLQDNGAEILNVNQSMFT-DRVFHKITAQVD 166
           ++  VL  ++++G  +++V+ S    +R+F+ +  QV+
Sbjct: 195 SISNVLGGIEEDGFVLVDVSSSRSQGERLFYTLHLQVE 225

BLAST of Csa1G074400 vs. NCBI nr
Match: gi|449457739|ref|XP_004146605.1| (PREDICTED: transcription factor bHLH118-like [Cucumis sativus])

HSP 1 Score: 412.1 bits (1058), Expect = 5.5e-112
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1

Query: 1   MSNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYI 60
           MSNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYI
Sbjct: 1   MSNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYI 60

Query: 61  KELQKNIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFL 120
           KELQKNIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFL
Sbjct: 61  KELQKNIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFL 120

Query: 121 TTGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICE 180
           TTGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICE
Sbjct: 121 TTGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICE 180

Query: 181 TVKKYVSEYKDGECSVEGNGGEDF 205
           TVKKYVSEYKDGECSVEGNGGEDF
Sbjct: 181 TVKKYVSEYKDGECSVEGNGGEDF 204

BLAST of Csa1G074400 vs. NCBI nr
Match: gi|659068080|ref|XP_008442634.1| (PREDICTED: transcription factor ORG2-like [Cucumis melo])

HSP 1 Score: 346.7 bits (888), Expect = 2.8e-92
Identity = 182/214 (85.05%), Postives = 193/214 (90.19%), Query Frame = 1

Query: 1   MSNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYI 60
           MSNPIRCQPTPQS+RKFVERNRRKEMK+LFSTLNSLLPN TS EAPRTVPDQLEDATNYI
Sbjct: 36  MSNPIRCQPTPQSDRKFVERNRRKEMKSLFSTLNSLLPNHTSREAPRTVPDQLEDATNYI 95

Query: 61  KELQKNIKKLKEKKEKLMG---MEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVE 120
           KELQKNI+KLKEKKE+LMG   MEEDEEAEGRRRRR +E ETKPKL + VKAHQIGSSVE
Sbjct: 96  KELQKNIQKLKEKKEELMGKNKMEEDEEAEGRRRRR-FEHETKPKLLLQVKAHQIGSSVE 155

Query: 121 VFLTTGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGER 180
           VFLTTGSDYHF LQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGI G GDGER
Sbjct: 156 VFLTTGSDYHFILQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGI-GPGDGER 215

Query: 181 ICETVKKYVSEYKDGECSVE--------GNGGED 204
           IC+TVKK+VS+YKD +CSV+        GNGGED
Sbjct: 216 ICKTVKKFVSQYKDEQCSVDYNGNGNGNGNGGED 247

BLAST of Csa1G074400 vs. NCBI nr
Match: gi|694323703|ref|XP_009352909.1| (PREDICTED: transcription factor bHLH55-like isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 78/187 (41.71%), Postives = 124/187 (66.31%), Query Frame = 1

Query: 6   RCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQK 65
           +C  + +++RK +E+NRR +MKALFS LNSL+P++ S EA  ++PDQL+DA NYIK+L+ 
Sbjct: 3   KCPSSSRTDRKTIEKNRRNQMKALFSKLNSLVPHRRSREA--SLPDQLDDAVNYIKKLRT 62

Query: 66  NIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFLTTGSD 125
           N++KL+EKK++LMG+E+         R G         S  V+ H++GS++EV + TG D
Sbjct: 63  NLEKLREKKDRLMGIEKSSHCNAGFGRSGGPITEGLNSSPLVEIHEMGSALEVLMITGLD 122

Query: 126 YHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICETVKKY 185
           Y F   + +R+LQ+ GA+I+N + S+  D +FH I ++V  E    G    RI + +KK+
Sbjct: 123 YQFMFNESIRVLQEEGADIVNASFSVVEDTIFHTIHSKV-RESAAPGSVAARISKRLKKF 182

Query: 186 VSEYKDG 193
           V++ +DG
Sbjct: 183 VND-QDG 185

BLAST of Csa1G074400 vs. NCBI nr
Match: gi|657983315|ref|XP_008383729.1| (PREDICTED: transcription factor bHLH36-like isoform X2 [Malus domestica])

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 78/187 (41.71%), Postives = 123/187 (65.78%), Query Frame = 1

Query: 6   RCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIKELQK 65
           +C  + +++RK +E+NRR +MKALFS LNSL+P+Q S EA  ++PDQL+DA NYIK+LQ 
Sbjct: 3   KCPSSSRTDRKTIEKNRRNQMKALFSKLNSLVPHQRSREA--SLPDQLDDAVNYIKKLQT 62

Query: 66  NIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFLTTGSD 125
           N++KL+EKK++LMG+E+         R G         S  V+ H++GS++ V + TG D
Sbjct: 63  NLEKLREKKDRLMGIEKSSHCNAGFGRSGGAITEGLNSSPLVEIHEMGSALGVLMITGLD 122

Query: 126 YHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICETVKKY 185
           + F   + +R++Q+ GA+I+N + S+  D +FH I ++V  E    G    RI E +KK+
Sbjct: 123 HQFMFNESIRVIQEEGADIVNASFSVVKDTIFHTIHSKV-RESAAAGSVAARISERLKKF 182

Query: 186 VSEYKDG 193
           V++ +DG
Sbjct: 183 VND-QDG 185

BLAST of Csa1G074400 vs. NCBI nr
Match: gi|147822237|emb|CAN61967.1| (hypothetical protein VITISV_010916 [Vitis vinifera])

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-30
Identity = 83/185 (44.86%), Postives = 120/185 (64.86%), Query Frame = 1

Query: 2   SNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIK 61
           SNP     + +++RK +ERNRR  MK+L+S LNSL+P+QTS EA  T+PDQL++A NYIK
Sbjct: 3   SNP----SSSRTDRKTIERNRRNHMKSLYSKLNSLVPHQTSREAI-TLPDQLDEAANYIK 62

Query: 62  ELQKNIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFLT 121
            LQ+ ++K+KE+K+ LMG E    +       G +    P++ +H K    GS++EV L 
Sbjct: 63  RLQEKLEKMKERKDNLMGFERPNTSPNSGAMVGLKP---PQIDIHEK----GSALEVVLI 122

Query: 122 TGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICET 181
           TG D+ F   + +R+L + GAEI+N + S+  D VFH I AQV+G  +LG G   RI E 
Sbjct: 123 TGLDFQFMFNETIRVLHEEGAEIVNASFSVVDDTVFHTIHAQVEGP-VLGHG-AARISER 173

Query: 182 VKKYV 187
           +KK+V
Sbjct: 183 LKKFV 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
BH118_ARATH4.2e-1130.82Transcription factor bHLH118 OS=Arabidopsis thaliana GN=BHLH118 PE=2 SV=1[more]
BH036_ARATH2.7e-1032.26Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1[more]
BH126_ARATH4.6e-1027.44Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126 PE=2 SV=1[more]
ORG2_ARATH8.7e-0928.48Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1[more]
BH055_ARATH5.7e-0829.27Transcription factor bHLH55 OS=Arabidopsis thaliana GN=BHLH55 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LUL3_CUCSA3.8e-112100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G074400 PE=4 SV=1[more]
A5C0F4_VITVI7.4e-3144.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010916 PE=4 SV=1[more]
A0A067G8S2_CITSI1.8e-2941.14Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029713mg PE=4 SV=1[more]
V4W8P1_9ROSI3.1e-2941.71Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016846mg PE=4 SV=1[more]
A0A067GKY0_CITSI5.3e-2941.14Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029713mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G20970.15.6e-2235.59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G25400.12.4e-1230.82 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT5G51780.11.5e-1132.26 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G25410.12.6e-1127.44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G56970.14.9e-1028.48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449457739|ref|XP_004146605.1|5.5e-112100.00PREDICTED: transcription factor bHLH118-like [Cucumis sativus][more]
gi|659068080|ref|XP_008442634.1|2.8e-9285.05PREDICTED: transcription factor ORG2-like [Cucumis melo][more]
gi|694323703|ref|XP_009352909.1|1.3e-3141.71PREDICTED: transcription factor bHLH55-like isoform X2 [Pyrus x bretschneideri][more]
gi|657983315|ref|XP_008383729.1|1.3e-3141.71PREDICTED: transcription factor bHLH36-like isoform X2 [Malus domestica][more]
gi|147822237|emb|CAN61967.1|1.1e-3044.86hypothetical protein VITISV_010916 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR015660MASH1/Ascl1a-like
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU088908cucumber EST collection version 3.0transcribed_cluster
CU103714cucumber EST collection version 3.0transcribed_cluster
CU117413cucumber EST collection version 3.0transcribed_cluster
CU131279cucumber EST collection version 3.0transcribed_cluster
CU162890cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G074400.1Csa1G074400.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU131279CU131279transcribed_cluster
CU117413CU117413transcribed_cluster
CU103714CU103714transcribed_cluster
CU088908CU088908transcribed_cluster
CU162890CU162890transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 14..78
score: 7.7
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 17..64
score: 7.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 16..69
score: 0.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 10..63
score: 1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 9..77
score: 3.79
IPR015660Achaete-scute transcription factor-relatedPANTHERPTHR13935ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATEDcoord: 14..188
score: 4.6
NoneNo IPR availableunknownCoilCoilcoord: 53..87
scor
NoneNo IPR availablePANTHERPTHR13935:SF46BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEINcoord: 14..188
score: 4.6

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa1G074400Csa7G048070Cucumber (Chinese Long) v2cucuB045
The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G074400Watermelon (97103) v2cuwmbB000
Csa1G074400Watermelon (97103) v2cuwmbB023
Csa1G074400Wax gourdcuwgoB023
Csa1G074400Wax gourdcuwgoB038
Csa1G074400Wax gourdcuwgoB073
Csa1G074400Cucumber (Chinese Long) v2cucuB026
Csa1G074400Cucumber (Chinese Long) v2cucuB035
Csa1G074400Cucumber (Gy14) v1cgycuB015
Csa1G074400Cucumber (Gy14) v1cgycuB161
Csa1G074400Cucurbita maxima (Rimu)cmacuB010
Csa1G074400Cucurbita maxima (Rimu)cmacuB218
Csa1G074400Cucurbita maxima (Rimu)cmacuB648
Csa1G074400Cucurbita maxima (Rimu)cmacuB848
Csa1G074400Cucurbita moschata (Rifu)cmocuB000
Csa1G074400Cucurbita moschata (Rifu)cmocuB203
Csa1G074400Cucurbita moschata (Rifu)cmocuB419
Csa1G074400Cucurbita moschata (Rifu)cmocuB636
Csa1G074400Cucurbita moschata (Rifu)cmocuB836
Csa1G074400Melon (DHL92) v3.5.1cumeB083
Csa1G074400Watermelon (Charleston Gray)cuwcgB009
Csa1G074400Watermelon (Charleston Gray)cuwcgB012
Csa1G074400Watermelon (97103) v1cuwmB043
Csa1G074400Watermelon (97103) v1cuwmB075
Csa1G074400Cucurbita pepo (Zucchini)cpecuB058
Csa1G074400Cucurbita pepo (Zucchini)cpecuB474
Csa1G074400Cucurbita pepo (Zucchini)cpecuB506
Csa1G074400Cucurbita pepo (Zucchini)cpecuB770
Csa1G074400Bottle gourd (USVL1VR-Ls)culsiB019
Csa1G074400Cucumber (Gy14) v2cgybcuB158
Csa1G074400Cucumber (Gy14) v2cgybcuB239
Csa1G074400Melon (DHL92) v3.6.1cumedB077
Csa1G074400Silver-seed gourdcarcuB0186
Csa1G074400Silver-seed gourdcarcuB0575
Csa1G074400Silver-seed gourdcarcuB0661
Csa1G074400Silver-seed gourdcarcuB0963