Cp4.1LG04g02860 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g02860
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description60S ribosomal protein L11
LocationCp4.1LG04 : 7572689 .. 7574812 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGGCTACTTCAAACAATATTAGGGTTTCTTCCCCCTTCCCTGGAATCGAGCAGCAGTAGCACCACCAGCAACACACAAGCCGCAGCTGCGTAGCCACCCGCCAGAACATTTCAATGGTAATTTTCTCTAGATTCTTTCTGTTTTCTAGCTATAGATTCTTAAAAAGCTCCTATAATCTTGTATCCTTCATGCGACTTAATCATTTACTTCTGTTAACATGGCGCAGGCTTCGGAGAGGAAGTTATCGAACACCATGAGGGATATTAAGGTGCAGAAGCTCGTTCTCAATATCTCAGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCTGCCAAGGTTCTACTTTAATGTGTACATTGTTCTTGTTCATTTAGCTGCTTCTTTCTTGTTTCCGCCATTAATGATCTACTTTGATTAGGTGCTCGAGCAACTAAGCGGCCAGAGCCCTGTGTTCTCTAAGGGTACTTTCTTTTCTCTCTTCAAGTACTCGATTGACTTAGATTATGGAATGGTCCAAATGATAATAGGAAGAAAGATTTAGAATCTAAAGTTGAAATTTGGATGAGTTCTTTTGTTTTTAGAATTGAAACTGAAGTTATCTTTGAATGTCACAGCCCAATATTGGATCTGATAGGCTGTCATTTTGTTTGTTGTTATTTTGGTCAATAGCGAGATACACTGTGCGTTCATTTGGAATCAGACGTAATGAGAAGATTGCTTGCTATGTCACCGTTAGAGGCGAGAAGGCTATGCAGCTTTTGGAAAGTGGGTTGAAGGTTAAGGAGTACGAGTTGCTTCGCAGGAACTTCAGTGACACTGGATGCTTTGGCTTTGGTATTCAAGAACACATTGATCTTGGAATCAAGTGAGCCCTTAAACACATCTGAATATGCCTTTAATCTGTTTCGAGATCTATAATCTGATTTGCTTAGCTGATTCTGTTTTGCATTGTGTTTGAATTTAGTTTACTTCTAATTAGTCATTCATTGGGATGGGATTTTTGGCAATGGAAATGGTAATTTTTCTGCTCGAATCTCTGTAGTTGAAGAACGTATGGGTGTTGAGGATTGTTTGGAGCAAGTCCCACATTGGTTAATTTAGTGGAAGATCATGGGTTTATAAGTGAGGAATACTATTTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAGAGCAAAGCCATGAGAGCTTATGTTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGATTTCTAACATGGGGATCGAGATTGAGGTTGGGGATGCCGTTGACAATGTCTTGTGGGGATATAAATTTTAGTCCCGACTATTCCTTGAGTAATTTGTGCCGTTTTCTTTTTAGTTAAACCAGCCTTGTGGGATCGGACTTTTGGCAATGGTGATGGTGTTTTTCTGCCTGATTCTCTATAGTCAAAGAACGTATGGGGATCGAGATTGAGGTTGGGGATACGGTTGACAATGTCTTGTGGGGATATAAATTTTAGTCCCGACTCTTTTCTGAGTAATGTGTGACGATATCTTTGAAGGCTAATAAGGAGTAGGGGCATCCCGAATCTTGTGTAGACTAATCGATATCACTATCGTTGAAGTTTTCTTGTAATCCATCTCGTGTTTATGTGTGCAACTGTGATGTTTCAGGTACGATCCATCCACCGGTATCTACGGTATGGACTTCTTCGTTGTCTTGGAGCGACCAGGATACCGTGTGGGGCGTCGCAGGAGGTGCAAGTCTCGTGTCGGGATCCAGCACCGGGTCACAAAGGAGGACGCCATGAAGTGGTTCCAGGTGAAATACGAGGGAGTTATTCTTAACAAGTCTCAGCAACTCACTGGTTAAGTTTCAGAGGGATTTCTCAAATAGATGGAGAGTTATTTAGTGTGCAAGTTATAAAATTTTGTGCTTTTACCATTAGCCTGACTGAAGCTCTTTATTATTGTTTTTTTTCTTTGGATATTTTTCGGCTTTAATGAAAGATTATTAGAATCAATTTGAGAACATTTTAAGCTGTAAAGCAATTTTTTTTTTTTTTTTTTTTTTTTAATTGGAAAACTTCATAAACATGTTTGGTAACATTAATAGTCTATATTGATATAGATTTGAATTATTTTGAATTCATTAAG

mRNA sequence

TTCGGCTACTTCAAACAATATTAGGGTTTCTTCCCCCTTCCCTGGAATCGAGCAGCAGTAGCACCACCAGCAACACACAAGCCGCAGCTGCGTAGCCACCCGCCAGAACATTTCAATGGCTTCGGAGAGGAAGTTATCGAACACCATGAGGGATATTAAGGTGCAGAAGCTCGTTCTCAATATCTCAGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCTGCCAAGGTGCTCGAGCAACTAAGCGGCCAGAGCCCTGTGTTCTCTAAGGCGAGATACACTGTGCGTTCATTTGGAATCAGACGTAATGAGAAGATTGCTTGCTATGTCACCGTTAGAGGCGAGAAGGCTATGCAGCTTTTGGAAAGTGGGTTGAAGGTTAAGGAGTACGAGTTGCTTCGCAGGAACTTCAGTGACACTGGATGCTTTGGCTTTGGTATTCAAGAACACATTGATCTTGGAATCAAGTACGATCCATCCACCGGTATCTACGGTATGGACTTCTTCGTTGTCTTGGAGCGACCAGGATACCGTGTGGGGCGTCGCAGGAGGTGCAAGTCTCGTGTCGGGATCCAGCACCGGGTCACAAAGGAGGACGCCATGAAGTGGTTCCAGGTGAAATACGAGGGAGTTATTCTTAACAAGTCTCAGCAACTCACTGGTTAAGTGTTATAAAATTTTGTGCTTTTACCATTAGCCTGACTGAAGCTCTTTATTATTGTTTTTTTTCTTTGGATATTTTTCGGCTTTAATGAAAGATTATTAGAATCAATTTGAGAACATTTTAAGCTGTAAAGCAATTTTTTTTTTTTTTTTTTTTTTTTAATTGGAAAACTTCATAAACATGTTTGGTAACATTAATAGTCTATATTGATATAGATTTGAATTATTTTGAATTCATTAAG

Coding sequence (CDS)

ATGGCTTCGGAGAGGAAGTTATCGAACACCATGAGGGATATTAAGGTGCAGAAGCTCGTTCTCAATATCTCAGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCTGCCAAGGTGCTCGAGCAACTAAGCGGCCAGAGCCCTGTGTTCTCTAAGGCGAGATACACTGTGCGTTCATTTGGAATCAGACGTAATGAGAAGATTGCTTGCTATGTCACCGTTAGAGGCGAGAAGGCTATGCAGCTTTTGGAAAGTGGGTTGAAGGTTAAGGAGTACGAGTTGCTTCGCAGGAACTTCAGTGACACTGGATGCTTTGGCTTTGGTATTCAAGAACACATTGATCTTGGAATCAAGTACGATCCATCCACCGGTATCTACGGTATGGACTTCTTCGTTGTCTTGGAGCGACCAGGATACCGTGTGGGGCGTCGCAGGAGGTGCAAGTCTCGTGTCGGGATCCAGCACCGGGTCACAAAGGAGGACGCCATGAAGTGGTTCCAGGTGAAATACGAGGGAGTTATTCTTAACAAGTCTCAGCAACTCACTGGTTAA

Protein sequence

MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQLTG
Homology
[Close]
BLAST of Cp4.1LG04g02860 vs. Swiss-Prot
Match: RL111_ARATH (60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=2 SV=2)

HSP 1 Score: 350.1 bits (897), Expect = 1.4e-95
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Cp4.1LG04g02860 vs. Swiss-Prot
Match: RL112_ARATH (60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2)

HSP 1 Score: 350.1 bits (897), Expect = 1.4e-95
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Cp4.1LG04g02860 vs. Swiss-Prot
Match: RL11_MEDSA (60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 1.2e-94
Identity = 171/180 (95.00%), Postives = 178/180 (98.89%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDFFVVLERPGYRVGRRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180

[Close]
BLAST of Cp4.1LG04g02860 vs. Swiss-Prot
Match: RL11_ORYSI (60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2)

HSP 1 Score: 339.3 bits (869), Expect = 2.5e-92
Identity = 169/181 (93.37%), Postives = 175/181 (96.69%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+K SN MR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLER GYRV RRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNK+Q  
Sbjct: 121 STGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180

Query: 181 T 182
           T
Sbjct: 181 T 181

[Close]
BLAST of Cp4.1LG04g02860 vs. Swiss-Prot
Match: RL11_ORYSJ (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 2.5e-92
Identity = 169/181 (93.37%), Postives = 175/181 (96.69%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+K SN MR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLER GYRV RRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNK+Q  
Sbjct: 121 STGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180

Query: 181 T 182
           T
Sbjct: 181 T 181

[Close]
BLAST of Cp4.1LG04g02860 vs. TrEMBL
Match: A0A0A0L6K1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127210 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.5e-96
Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQ+
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Cp4.1LG04g02860 vs. TrEMBL
Match: A0A059DFW4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01929 PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 4.9e-95
Identity = 175/182 (96.15%), Postives = 180/182 (98.90%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF++VLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYIVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Cp4.1LG04g02860 vs. TrEMBL
Match: A0A0A0LUL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G470310 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 6.5e-95
Identity = 176/182 (96.70%), Postives = 179/182 (98.35%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRVGRRRRCKS VGIQHRVTKEDAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Cp4.1LG04g02860 vs. TrEMBL
Match: A0A059CCB7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00478 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.1e-94
Identity = 175/182 (96.15%), Postives = 180/182 (98.90%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRVGRRRRCKSRVGI+HRVTKEDAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSRVGIRHRVTKEDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Cp4.1LG04g02860 vs. TrEMBL
Match: A0A103XC80_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_024576 PE=3 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 7.1e-94
Identity = 174/182 (95.60%), Postives = 179/182 (98.35%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASERK SN MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASERKQSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDFFVVLERPGYRVGRRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQQ+
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQQI 180

Query: 181 TG 183
            G
Sbjct: 181 GG 182

[Close]
BLAST of Cp4.1LG04g02860 vs. TAIR10
Match: AT2G42740.1 (AT2G42740.1 ribosomal protein large subunit 16A)

HSP 1 Score: 350.1 bits (897), Expect = 8.0e-97
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Cp4.1LG04g02860 vs. TAIR10
Match: AT3G58700.1 (AT3G58700.1 Ribosomal L5P family protein)

HSP 1 Score: 350.1 bits (897), Expect = 8.0e-97
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Cp4.1LG04g02860 vs. TAIR10
Match: AT4G18730.1 (AT4G18730.1 ribosomal protein L16B)

HSP 1 Score: 350.1 bits (897), Expect = 8.0e-97
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Cp4.1LG04g02860 vs. TAIR10
Match: AT5G45775.2 (AT5G45775.2 Ribosomal L5P family protein)

HSP 1 Score: 350.1 bits (897), Expect = 8.0e-97
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Cp4.1LG04g02860 vs. TAIR10
Match: AT4G01310.1 (AT4G01310.1 Ribosomal L5P family protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-06
Identity = 34/138 (24.64%), Postives = 71/138 (51.45%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQSPVFSKARYTVR 60
           +  E K  N  +  KVQK+V+N  +G++      L  A K +  ++GQ P+ ++AR ++ 
Sbjct: 71  LKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIA 130

Query: 61  SFGIRRNEKIACYVTVRGEKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEH 120
           +F IR ++ +   VT+RG+     L+  +     + ++++ +   +F   G +  G+++ 
Sbjct: 131 TFKIREDQPLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQ 190

Query: 121 -IDLGIKYDPSTGIYGMD 129
            +   I++D      GMD
Sbjct: 191 GVFPEIRFDAVGKTRGMD 208

[Close]
BLAST of Cp4.1LG04g02860 vs. NCBI nr
Match: gi|449432329|ref|XP_004133952.1| (PREDICTED: 60S ribosomal protein L11-1 isoform X2 [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 2.2e-96
Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQ+
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Cp4.1LG04g02860 vs. NCBI nr
Match: gi|449432327|ref|XP_004133951.1| (PREDICTED: 60S ribosomal protein L11 isoform X1 [Cucumis sativus])

HSP 1 Score: 358.6 bits (919), Expect = 6.4e-96
Identity = 178/181 (98.34%), Postives = 180/181 (99.45%), Query Frame = 1 

Query: 2   ASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 61
           ASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI
Sbjct: 4   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 63

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 64  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 123

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQLT 181
           TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQ+T
Sbjct: 124 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIT 183

Query: 182 G 183
           G
Sbjct: 184 G 184

[Close]
BLAST of Cp4.1LG04g02860 vs. NCBI nr
Match: gi|702245325|ref|XP_010052848.1| (PREDICTED: 60S ribosomal protein L11-1 [Eucalyptus grandis])

HSP 1 Score: 355.1 bits (910), Expect = 7.1e-95
Identity = 175/182 (96.15%), Postives = 180/182 (98.90%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF++VLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYIVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Cp4.1LG04g02860 vs. NCBI nr
Match: gi|659068234|ref|XP_008443441.1| (PREDICTED: 60S ribosomal protein L11-1 [Cucumis melo])

HSP 1 Score: 354.8 bits (909), Expect = 9.3e-95
Identity = 176/182 (96.70%), Postives = 179/182 (98.35%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRVGRRRRCKS VGIQHRVTKEDAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Cp4.1LG04g02860 vs. NCBI nr
Match: gi|702245321|ref|XP_010052835.1| (PREDICTED: 60S ribosomal protein L11-1-like [Eucalyptus grandis])

HSP 1 Score: 354.4 bits (908), Expect = 1.2e-94
Identity = 175/182 (96.15%), Postives = 180/182 (98.90%), Query Frame = 1 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MA+E+KLSN MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MAAEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g02860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL111_ARATH1.4e-9594.5160S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=2 SV=2[more]
RL112_ARATH1.4e-9594.5160S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2[more]
RL11_MEDSA1.2e-9495.0060S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1[more]
RL11_ORYSI2.5e-9293.3760S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2[more]
RL11_ORYSJ2.5e-9293.3760S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1[more]
BLAST of Cp4.1LG04g02860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6K1_CUCSA1.5e-9698.35Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127210 PE=3 SV=1[more]
A0A059DFW4_EUCGR4.9e-9596.15Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01929 PE=3 SV=1[more]
A0A0A0LUL5_CUCSA6.5e-9596.70Uncharacterized protein OS=Cucumis sativus GN=Csa_1G470310 PE=3 SV=1[more]
A0A059CCB7_EUCGR1.1e-9496.15Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00478 PE=3 SV=1[more]
A0A103XC80_CYNCS7.1e-9495.60Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_024576 PE=3 ... [more]
BLAST of Cp4.1LG04g02860 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42740.18.0e-9794.51 ribosomal protein large subunit 16A[more]
AT3G58700.18.0e-9794.51 Ribosomal L5P family protein[more]
AT4G18730.18.0e-9794.51 ribosomal protein L16B[more]
AT5G45775.28.0e-9794.51 Ribosomal L5P family protein[more]
AT4G01310.11.0e-0624.64 Ribosomal L5P family protein[more]
BLAST of Cp4.1LG04g02860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432329|ref|XP_004133952.1|2.2e-9698.35PREDICTED: 60S ribosomal protein L11-1 isoform X2 [Cucumis sativus][more]
gi|449432327|ref|XP_004133951.1|6.4e-9698.34PREDICTED: 60S ribosomal protein L11 isoform X1 [Cucumis sativus][more]
gi|702245325|ref|XP_010052848.1|7.1e-9596.15PREDICTED: 60S ribosomal protein L11-1 [Eucalyptus grandis][more]
gi|659068234|ref|XP_008443441.1|9.3e-9596.70PREDICTED: 60S ribosomal protein L11-1 [Cucumis melo][more]
gi|702245321|ref|XP_010052835.1|1.2e-9496.15PREDICTED: 60S ribosomal protein L11-1-like [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR022803Ribosomal_L5_dom_sf
IPR020929Ribosomal_L5_CS
IPR002132Ribosomal_L5
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001510 RNA methylation
biological_process GO:0006412 translation
biological_process GO:0030245 cellulose catabolic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0016020 membrane
cellular_component GO:0005773 vacuole
cellular_component GO:0009507 chloroplast
cellular_component GO:0005730 nucleolus
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0008810 cellulase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g02860.1Cp4.1LG04g02860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002132Ribosomal protein L5PIRPIRSF002161RPL5p_RPL5a_RPL11e_RPL5ocoord: 1..172
score: 4.6
IPR020929Ribosomal protein L5, conserved sitePROSITEPS00358RIBOSOMAL_L5coord: 39..55
scor
IPR022803Ribosomal protein L5 domainGENE3DG3DSA:3.30.1440.10coord: 3..175
score: 1.1
IPR022803Ribosomal protein L5 domainunknownSSF55282RL5-likecoord: 9..173
score: 1.11
NoneNo IPR availablePANTHERPTHR1199460S RIBOSOMAL PROTEIN L11-RELATEDcoord: 1..178
score: 7.4E
NoneNo IPR availablePANTHERPTHR11994:SF13SUBFAMILY NOT NAMEDcoord: 1..178
score: 7.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g02860CmoCh19G010480Cucurbita moschata (Rifu)cmocpeB492
Cp4.1LG04g02860CmoCh11G019830Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g02860Cla002246Watermelon (97103) v1cpewmB651
Cp4.1LG04g02860ClCG07G002650Watermelon (Charleston Gray)cpewcgB622
Cp4.1LG04g02860Lsi11G017220Bottle gourd (USVL1VR-Ls)cpelsiB531
Cp4.1LG04g02860CsaV3_1G033190Cucumber (Chinese Long) v3cpecucB0825
Cp4.1LG04g02860CsaV3_6G051000Cucumber (Chinese Long) v3cpecucB0858
Cp4.1LG04g02860Bhi08G001781Wax gourdcpewgoB0872
Cp4.1LG04g02860Carg19146Silver-seed gourdcarcpeB1015
Cp4.1LG04g02860Carg15737Silver-seed gourdcarcpeB0753
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g02860Cp4.1LG15g08280Cucurbita pepo (Zucchini)cpecpeB267
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g02860Melon (DHL92) v3.6.1cpemedB721
Cp4.1LG04g02860Melon (DHL92) v3.6.1cpemedB714
Cp4.1LG04g02860Melon (DHL92) v3.6.1cpemedB770
Cp4.1LG04g02860Silver-seed gourdcarcpeB0047
Cp4.1LG04g02860Silver-seed gourdcarcpeB0754
Cp4.1LG04g02860Silver-seed gourdcarcpeB1223
Cp4.1LG04g02860Cucumber (Chinese Long) v3cpecucB0812
Cp4.1LG04g02860Cucumber (Chinese Long) v3cpecucB0863
Cp4.1LG04g02860Wax gourdcpewgoB0844
Cp4.1LG04g02860Wax gourdcpewgoB0865
Cp4.1LG04g02860Wax gourdcpewgoB0881
Cp4.1LG04g02860Cucurbita pepo (Zucchini)cpecpeB271
Cp4.1LG04g02860Cucurbita pepo (Zucchini)cpecpeB306
Cp4.1LG04g02860Cucurbita pepo (Zucchini)cpecpeB492
Cp4.1LG04g02860Cucumber (Gy14) v1cgycpeB0329
Cp4.1LG04g02860Cucumber (Gy14) v1cgycpeB0552
Cp4.1LG04g02860Cucurbita maxima (Rimu)cmacpeB148
Cp4.1LG04g02860Cucurbita maxima (Rimu)cmacpeB451
Cp4.1LG04g02860Cucurbita maxima (Rimu)cmacpeB537
Cp4.1LG04g02860Cucurbita maxima (Rimu)cmacpeB541
Cp4.1LG04g02860Cucurbita maxima (Rimu)cmacpeB573
Cp4.1LG04g02860Cucurbita maxima (Rimu)cmacpeB642
Cp4.1LG04g02860Cucurbita moschata (Rifu)cmocpeB412
Cp4.1LG04g02860Cucurbita moschata (Rifu)cmocpeB496
Cp4.1LG04g02860Cucurbita moschata (Rifu)cmocpeB524
Cp4.1LG04g02860Cucurbita moschata (Rifu)cmocpeB592
Cp4.1LG04g02860Wild cucumber (PI 183967)cpecpiB692
Cp4.1LG04g02860Cucumber (Chinese Long) v2cpecuB690
Cp4.1LG04g02860Bottle gourd (USVL1VR-Ls)cpelsiB523
Cp4.1LG04g02860Watermelon (Charleston Gray)cpewcgB592
Cp4.1LG04g02860Watermelon (97103) v1cpewmB668
Cp4.1LG04g02860Melon (DHL92) v3.5.1cpemeB609
Cp4.1LG04g02860Cucumber (Gy14) v2cgybcpeB964