Cp4.1LG04g02860.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g02860.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S ribosomal protein L11
Location	Cp4.1LG04 : 7572689 .. 7574812 (-)
Sequence length	903

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGGCTACTTCAAACAATATTAGGGTTTCTTCCCCCTTCCCTGGAATCGAGCAGCAGTAGCACCACCAGCAACACACAAGCCGCAGCTGCGTAGCCACCCGCCAGAACATTTCAATGGTAATTTTCTCTAGATTCTTTCTGTTTTCTAGCTATAGATTCTTAAAAAGCTCCTATAATCTTGTATCCTTCATGCGACTTAATCATTTACTTCTGTTAACATGGCGCAGGCTTCGGAGAGGAAGTTATCGAACACCATGAGGGATATTAAGGTGCAGAAGCTCGTTCTCAATATCTCAGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCTGCCAAGGTTCTACTTTAATGTGTACATTGTTCTTGTTCATTTAGCTGCTTCTTTCTTGTTTCCGCCATTAATGATCTACTTTGATTAGGTGCTCGAGCAACTAAGCGGCCAGAGCCCTGTGTTCTCTAAGGGTACTTTCTTTTCTCTCTTCAAGTACTCGATTGACTTAGATTATGGAATGGTCCAAATGATAATAGGAAGAAAGATTTAGAATCTAAAGTTGAAATTTGGATGAGTTCTTTTGTTTTTAGAATTGAAACTGAAGTTATCTTTGAATGTCACAGCCCAATATTGGATCTGATAGGCTGTCATTTTGTTTGTTGTTATTTTGGTCAATAGCGAGATACACTGTGCGTTCATTTGGAATCAGACGTAATGAGAAGATTGCTTGCTATGTCACCGTTAGAGGCGAGAAGGCTATGCAGCTTTTGGAAAGTGGGTTGAAGGTTAAGGAGTACGAGTTGCTTCGCAGGAACTTCAGTGACACTGGATGCTTTGGCTTTGGTATTCAAGAACACATTGATCTTGGAATCAAGTGAGCCCTTAAACACATCTGAATATGCCTTTAATCTGTTTCGAGATCTATAATCTGATTTGCTTAGCTGATTCTGTTTTGCATTGTGTTTGAATTTAGTTTACTTCTAATTAGTCATTCATTGGGATGGGATTTTTGGCAATGGAAATGGTAATTTTTCTGCTCGAATCTCTGTAGTTGAAGAACGTATGGGTGTTGAGGATTGTTTGGAGCAAGTCCCACATTGGTTAATTTAGTGGAAGATCATGGGTTTATAAGTGAGGAATACTATTTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAGAGCAAAGCCATGAGAGCTTATGTTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGATTTCTAACATGGGGATCGAGATTGAGGTTGGGGATGCCGTTGACAATGTCTTGTGGGGATATAAATTTTAGTCCCGACTATTCCTTGAGTAATTTGTGCCGTTTTCTTTTTAGTTAAACCAGCCTTGTGGGATCGGACTTTTGGCAATGGTGATGGTGTTTTTCTGCCTGATTCTCTATAGTCAAAGAACGTATGGGGATCGAGATTGAGGTTGGGGATACGGTTGACAATGTCTTGTGGGGATATAAATTTTAGTCCCGACTCTTTTCTGAGTAATGTGTGACGATATCTTTGAAGGCTAATAAGGAGTAGGGGCATCCCGAATCTTGTGTAGACTAATCGATATCACTATCGTTGAAGTTTTCTTGTAATCCATCTCGTGTTTATGTGTGCAACTGTGATGTTTCAGGTACGATCCATCCACCGGTATCTACGGTATGGACTTCTTCGTTGTCTTGGAGCGACCAGGATACCGTGTGGGGCGTCGCAGGAGGTGCAAGTCTCGTGTCGGGATCCAGCACCGGGTCACAAAGGAGGACGCCATGAAGTGGTTCCAGGTGAAATACGAGGGAGTTATTCTTAACAAGTCTCAGCAACTCACTGGTTAAGTTTCAGAGGGATTTCTCAAATAGATGGAGAGTTATTTAGTGTGCAAGTTATAAAATTTTGTGCTTTTACCATTAGCCTGACTGAAGCTCTTTATTATTGTTTTTTTTCTTTGGATATTTTTCGGCTTTAATGAAAGATTATTAGAATCAATTTGAGAACATTTTAAGCTGTAAAGCAATTTTTTTTTTTTTTTTTTTTTTTTAATTGGAAAACTTCATAAACATGTTTGGTAACATTAATAGTCTATATTGATATAGATTTGAATTATTTTGAATTCATTAAG

mRNA sequence

TTCGGCTACTTCAAACAATATTAGGGTTTCTTCCCCCTTCCCTGGAATCGAGCAGCAGTAGCACCACCAGCAACACACAAGCCGCAGCTGCGTAGCCACCCGCCAGAACATTTCAATGGCTTCGGAGAGGAAGTTATCGAACACCATGAGGGATATTAAGGTGCAGAAGCTCGTTCTCAATATCTCAGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCTGCCAAGGTGCTCGAGCAACTAAGCGGCCAGAGCCCTGTGTTCTCTAAGGCGAGATACACTGTGCGTTCATTTGGAATCAGACGTAATGAGAAGATTGCTTGCTATGTCACCGTTAGAGGCGAGAAGGCTATGCAGCTTTTGGAAAGTGGGTTGAAGGTTAAGGAGTACGAGTTGCTTCGCAGGAACTTCAGTGACACTGGATGCTTTGGCTTTGGTATTCAAGAACACATTGATCTTGGAATCAAGTACGATCCATCCACCGGTATCTACGGTATGGACTTCTTCGTTGTCTTGGAGCGACCAGGATACCGTGTGGGGCGTCGCAGGAGGTGCAAGTCTCGTGTCGGGATCCAGCACCGGGTCACAAAGGAGGACGCCATGAAGTGGTTCCAGGTGAAATACGAGGGAGTTATTCTTAACAAGTCTCAGCAACTCACTGGTTAAGTGTTATAAAATTTTGTGCTTTTACCATTAGCCTGACTGAAGCTCTTTATTATTGTTTTTTTTCTTTGGATATTTTTCGGCTTTAATGAAAGATTATTAGAATCAATTTGAGAACATTTTAAGCTGTAAAGCAATTTTTTTTTTTTTTTTTTTTTTTTAATTGGAAAACTTCATAAACATGTTTGGTAACATTAATAGTCTATATTGATATAGATTTGAATTATTTTGAATTCATTAAG

Coding sequence (CDS)

ATGGCTTCGGAGAGGAAGTTATCGAACACCATGAGGGATATTAAGGTGCAGAAGCTCGTTCTCAATATCTCAGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCTGCCAAGGTGCTCGAGCAACTAAGCGGCCAGAGCCCTGTGTTCTCTAAGGCGAGATACACTGTGCGTTCATTTGGAATCAGACGTAATGAGAAGATTGCTTGCTATGTCACCGTTAGAGGCGAGAAGGCTATGCAGCTTTTGGAAAGTGGGTTGAAGGTTAAGGAGTACGAGTTGCTTCGCAGGAACTTCAGTGACACTGGATGCTTTGGCTTTGGTATTCAAGAACACATTGATCTTGGAATCAAGTACGATCCATCCACCGGTATCTACGGTATGGACTTCTTCGTTGTCTTGGAGCGACCAGGATACCGTGTGGGGCGTCGCAGGAGGTGCAAGTCTCGTGTCGGGATCCAGCACCGGGTCACAAAGGAGGACGCCATGAAGTGGTTCCAGGTGAAATACGAGGGAGTTATTCTTAACAAGTCTCAGCAACTCACTGGTTAA

Protein sequence

MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQLTG

Homology

[Close]

BLAST of Cp4.1LG04g02860.1 vs. Swiss-Prot
Match: RL111_ARATH (60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=2 SV=2)

HSP 1 Score: 350.1 bits (897), Expect = 1.4e-95
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]

BLAST of Cp4.1LG04g02860.1 vs. Swiss-Prot
Match: RL112_ARATH (60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2)

HSP 1 Score: 350.1 bits (897), Expect = 1.4e-95
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]

BLAST of Cp4.1LG04g02860.1 vs. Swiss-Prot
Match: RL11_MEDSA (60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 1.2e-94
Identity = 171/180 (95.00%), Postives = 178/180 (98.89%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDFFVVLERPGYRVGRRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180

[Close]

BLAST of Cp4.1LG04g02860.1 vs. Swiss-Prot
Match: RL11_ORYSI (60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2)

HSP 1 Score: 339.3 bits (869), Expect = 2.5e-92
Identity = 169/181 (93.37%), Postives = 175/181 (96.69%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+K SN MR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLER GYRV RRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNK+Q  
Sbjct: 121 STGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180

Query: 181 T 182
           T
Sbjct: 181 T 181

[Close]

BLAST of Cp4.1LG04g02860.1 vs. Swiss-Prot
Match: RL11_ORYSJ (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 2.5e-92
Identity = 169/181 (93.37%), Postives = 175/181 (96.69%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+K SN MR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLER GYRV RRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNK+Q  
Sbjct: 121 STGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180

Query: 181 T 182
           T
Sbjct: 181 T 181

[Close]

BLAST of Cp4.1LG04g02860.1 vs. TrEMBL
Match: A0A0A0L6K1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127210 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.5e-96
Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQ+
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]

BLAST of Cp4.1LG04g02860.1 vs. TrEMBL
Match: A0A059DFW4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01929 PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 4.9e-95
Identity = 175/182 (96.15%), Postives = 180/182 (98.90%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF++VLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYIVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]

BLAST of Cp4.1LG04g02860.1 vs. TrEMBL
Match: A0A0A0LUL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G470310 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 6.5e-95
Identity = 176/182 (96.70%), Postives = 179/182 (98.35%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRVGRRRRCKS VGIQHRVTKEDAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]

BLAST of Cp4.1LG04g02860.1 vs. TrEMBL
Match: A0A059CCB7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00478 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.1e-94
Identity = 175/182 (96.15%), Postives = 180/182 (98.90%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRVGRRRRCKSRVGI+HRVTKEDAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSRVGIRHRVTKEDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]

BLAST of Cp4.1LG04g02860.1 vs. TrEMBL
Match: A0A103XC80_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_024576 PE=3 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 7.1e-94
Identity = 174/182 (95.60%), Postives = 179/182 (98.35%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASERK SN MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASERKQSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDFFVVLERPGYRVGRRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQQ+
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQQI 180

Query: 181 TG 183
            G
Sbjct: 181 GG 182

[Close]

BLAST of Cp4.1LG04g02860.1 vs. TAIR10
Match: AT2G42740.1 (AT2G42740.1 ribosomal protein large subunit 16A)

HSP 1 Score: 350.1 bits (897), Expect = 8.0e-97
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]

BLAST of Cp4.1LG04g02860.1 vs. TAIR10
Match: AT3G58700.1 (AT3G58700.1 Ribosomal L5P family protein)

HSP 1 Score: 350.1 bits (897), Expect = 8.0e-97
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]

BLAST of Cp4.1LG04g02860.1 vs. TAIR10
Match: AT4G18730.1 (AT4G18730.1 ribosomal protein L16B)

HSP 1 Score: 350.1 bits (897), Expect = 8.0e-97
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]

BLAST of Cp4.1LG04g02860.1 vs. TAIR10
Match: AT5G45775.2 (AT5G45775.2 Ribosomal L5P family protein)

HSP 1 Score: 350.1 bits (897), Expect = 8.0e-97
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]

BLAST of Cp4.1LG04g02860.1 vs. TAIR10
Match: AT4G01310.1 (AT4G01310.1 Ribosomal L5P family protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-06
Identity = 34/138 (24.64%), Postives = 71/138 (51.45%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQSPVFSKARYTVR 60
           +  E K  N  +  KVQK+V+N  +G++      L  A K +  ++GQ P+ ++AR ++ 
Sbjct: 71  LKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIA 130

Query: 61  SFGIRRNEKIACYVTVRGEKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEH 120
           +F IR ++ +   VT+RG+     L+  +     + ++++ +   +F   G +  G+++ 
Sbjct: 131 TFKIREDQPLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQ 190

Query: 121 -IDLGIKYDPSTGIYGMD 129
            +   I++D      GMD
Sbjct: 191 GVFPEIRFDAVGKTRGMD 208

[Close]

BLAST of Cp4.1LG04g02860.1 vs. NCBI nr
Match: gi|449432329|ref|XP_004133952.1| (PREDICTED: 60S ribosomal protein L11-1 isoform X2 [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 2.2e-96
Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQ+
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]

BLAST of Cp4.1LG04g02860.1 vs. NCBI nr
Match: gi|449432327|ref|XP_004133951.1| (PREDICTED: 60S ribosomal protein L11 isoform X1 [Cucumis sativus])

HSP 1 Score: 358.6 bits (919), Expect = 6.4e-96
Identity = 178/181 (98.34%), Postives = 180/181 (99.45%), Query Frame = 1


Query: 2   ASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 61
           ASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI
Sbjct: 4   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 63

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 64  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 123

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQLT 181
           TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQ+T
Sbjct: 124 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIT 183

Query: 182 G 183
           G
Sbjct: 184 G 184

[Close]

BLAST of Cp4.1LG04g02860.1 vs. NCBI nr
Match: gi|702245325|ref|XP_010052848.1| (PREDICTED: 60S ribosomal protein L11-1 [Eucalyptus grandis])

HSP 1 Score: 355.1 bits (910), Expect = 7.1e-95
Identity = 175/182 (96.15%), Postives = 180/182 (98.90%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF++VLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYIVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]

BLAST of Cp4.1LG04g02860.1 vs. NCBI nr
Match: gi|659068234|ref|XP_008443441.1| (PREDICTED: 60S ribosomal protein L11-1 [Cucumis melo])

HSP 1 Score: 354.8 bits (909), Expect = 9.3e-95
Identity = 176/182 (96.70%), Postives = 179/182 (98.35%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRVGRRRRCKS VGIQHRVTKEDAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]

BLAST of Cp4.1LG04g02860.1 vs. NCBI nr
Match: gi|702245321|ref|XP_010052835.1| (PREDICTED: 60S ribosomal protein L11-1-like [Eucalyptus grandis])

HSP 1 Score: 354.4 bits (908), Expect = 1.2e-94
Identity = 175/182 (96.15%), Postives = 180/182 (98.90%), Query Frame = 1


Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MA+E+KLSN MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MAAEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g02860.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL111_ARATH	1.4e-95	94.51	60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=2 SV=2	[more]
RL112_ARATH	1.4e-95	94.51	60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2	[more]
RL11_MEDSA	1.2e-94	95.00	60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1	[more]
RL11_ORYSI	2.5e-92	93.37	60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2	[more]
RL11_ORYSJ	2.5e-92	93.37	60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1	[more]

BLAST of Cp4.1LG04g02860.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6K1_CUCSA	1.5e-96	98.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127210 PE=3 SV=1	[more]
A0A059DFW4_EUCGR	4.9e-95	96.15	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01929 PE=3 SV=1	[more]
A0A0A0LUL5_CUCSA	6.5e-95	96.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G470310 PE=3 SV=1	[more]
A0A059CCB7_EUCGR	1.1e-94	96.15	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00478 PE=3 SV=1	[more]
A0A103XC80_CYNCS	7.1e-94	95.60	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_024576 PE=3 ...	[more]

BLAST of Cp4.1LG04g02860.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42740.1	8.0e-97	94.51	ribosomal protein large subunit 16A	[more]
AT3G58700.1	8.0e-97	94.51	Ribosomal L5P family protein	[more]
AT4G18730.1	8.0e-97	94.51	ribosomal protein L16B	[more]
AT5G45775.2	8.0e-97	94.51	Ribosomal L5P family protein	[more]
AT4G01310.1	1.0e-06	24.64	Ribosomal L5P family protein	[more]

BLAST of Cp4.1LG04g02860.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432329\|ref\|XP_004133952.1\|	2.2e-96	98.35	PREDICTED: 60S ribosomal protein L11-1 isoform X2 [Cucumis sativus]	[more]
gi\|449432327\|ref\|XP_004133951.1\|	6.4e-96	98.34	PREDICTED: 60S ribosomal protein L11 isoform X1 [Cucumis sativus]	[more]
gi\|702245325\|ref\|XP_010052848.1\|	7.1e-95	96.15	PREDICTED: 60S ribosomal protein L11-1 [Eucalyptus grandis]	[more]
gi\|659068234\|ref\|XP_008443441.1\|	9.3e-95	96.70	PREDICTED: 60S ribosomal protein L11-1 [Cucumis melo]	[more]
gi\|702245321\|ref\|XP_010052835.1\|	1.2e-94	96.15	PREDICTED: 60S ribosomal protein L11-1-like [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR022803	Ribosomal_L5_dom_sf
IPR020929	Ribosomal_L5_CS
IPR002132	Ribosomal_L5

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016020	membrane
cellular_component	GO:0005773	vacuole
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG04g02860	Cp4.1LG04g02860	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g02860.1	Cp4.1LG04g02860.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g02860.1:five_prime_utr:001	Cp4.1LG04g02860.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g02860.1:cds:001	Cp4.1LG04g02860.1:cds:001	CDS
Cp4.1LG04g02860.1:cds:002	Cp4.1LG04g02860.1:cds:002	CDS
Cp4.1LG04g02860.1:cds:003	Cp4.1LG04g02860.1:cds:003	CDS
Cp4.1LG04g02860.1:cds:004	Cp4.1LG04g02860.1:cds:004	CDS
Cp4.1LG04g02860.1:cds:005	Cp4.1LG04g02860.1:cds:005	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g02860.1:three_prime_utr:001	Cp4.1LG04g02860.1:three_prime_utr:001	three_prime_UTR
Cp4.1LG04g02860.1:three_prime_utr:002	Cp4.1LG04g02860.1:three_prime_utr:002	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002132	Ribosomal protein L5	PIR	PIRSF002161	RPL5p_RPL5a_RPL11e_RPL5o	coord: 1..172 score: 4.6
IPR020929	Ribosomal protein L5, conserved site	PROSITE	PS00358	RIBOSOMAL_L5	coord: 39..55 scor
IPR022803	Ribosomal protein L5 domain	GENE3D	G3DSA:3.30.1440.10		coord: 3..175 score: 1.1
IPR022803	Ribosomal protein L5 domain	unknown	SSF55282	RL5-like	coord: 9..173 score: 1.11
None	No IPR available	PANTHER	PTHR11994	60S RIBOSOMAL PROTEIN L11-RELATED	coord: 1..178 score: 7.4E
None	No IPR available	PANTHER	PTHR11994:SF13	SUBFAMILY NOT NAMED	coord: 1..178 score: 7.4E