Carg19146 (gene) Silver-seed gourd

Overview
NameCarg19146
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRibosomal protein
LocationCucurbita_argyrosperma_scaffold_112 : 419697 .. 421689 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAACAATATTAGGGTTTCTTCCCCTTTCCCTGGGATCGAGCAGCAGTAGCACCACCAGCAACACACAAGCCGCAGCCGCGTAGCCACCCGCCAGAACACTTCAATGGTAATTTTCTCTAGATTCTTTCTGTTTTCTAGCATAGATTCTTAAAAAGCGCCTATAATCTTGTTTCCTTCATGCGACTTAATCATTTACTTCTGTTAACATGGCGCAGGCTTCGGAGAGGAAGTTATCGAACACCATGAGGGATATTAAGGTGCAGAAGCTCGTTCTCAATATCTCAGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCTGCCAAGGTTCTGGTTTAATGTGTGCATTGTTCTTTGTTTGTTTAGCTGCTTCTTTCCTTGTTTCCGCCATTGATGATTTACTTTGATTAGGTGCTCGAGCAACTAAGCGGCCAGAGCCCTGTGTTCTCTAAGGGTACTTTCTTTTTTCTCTTCAAGTACTCGATTGACTTATATTATGGAATGGTCCAAATGACAATAGGAAGAAAGATTTATAATCTGAAGTTGAAATTGTTGATGAACAATAGTTGTTTGGGCGAGTTCTTGTGTTGAGTTTATTTGTTTTACGTTTTTAGAATTGGATCTGATAGACTGTTATTTCTTTGTTATTTTGGTCAATAGCTAGATACACTGTGCGTTCATTTGGAATCAGACGTAATGAGAAGATTGCTTGCTATGTCACCGTTAGAGGCGAGAAGGCTATGCAGCTTTTGGAAAGTGGGTTGAAGGTTAAGGAGTACGAGTTGCTTCGCAGGAACTTCAGTGACACTGGATGCTTTGGCTTTGGTATTCAAGAACACATTGATCTTGGAATCAAGTAAGCCCTTAAACACATCTGAATATGCCTTTAATCTGTTTCGAGATCTATAATCTGATTTGCTTAACTGATTCTGTTTTGCATTGCGTTTGAATTTAGTTTACTTTCTAATTAGTCATTCATTGGGATGGGATTTTTGGCAATGGAAATGGTAATTTTTCTGCTTGAATCTCTGTAGTCGAAGAACGTATTGGTATCGAGATTGAGGTTGGGGATGCTGTTGACAATGTCTTGTGGGGATATAAATTATAGTCCTGACTCTTTCCTGAGTAATTTGTGCCGTTTTCTTTTTAGTTAAACCAATTGCTTCATGCCTGTGGGATCGGATTAAGGTTGGGGGTGCCTTTGACAATGTCCTGTGGGGACATAAATTTTAGTCCTGACTCGGGTAATTTGTGACGATATCTTTGAAGGCTTCAGGCCTTGTGATTGAAATTTCCTTCAGGATGGGGGAACAAGGAGTAGGGGCATCCCGAATCTTGTGTAGACTAATCGATATCACTATCTTTGAAGTTTTCTTGTAACCCATCTCGTGTTTGTGTGCAACCGTGATGTTTCAGGTACGATCCATCCACCGGTATCTACGGTATGGACTTCTTTGTTGTCTTGGAGCGACCAGGATACCGTGTGGGGCGTCGCAGGAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACGAAGGAGGACGCCATGAAGTGGTTCCAGGTGAAATACGAGGGAGTTATTCTTAACAAGTCTCAGCAACTCACTGGTTAAGTTTCAGAGGGATTTCTGAAATAGATGGAGAGTTATTTAGTGTGCAAGTTATAAAATTTTGTGCTTTTACCATTAGCCTGACTGAAGCTCTTTATTATTGTTTTTTTTTCTTTGGATATTTTTCGGCTTTAATGAAAGATTATTAGAATCAATTTGAGAACATTTTAAGCTGTTGGCAGTCTTATGTTTTAGTAATTTGAGAACATTTTAAGCTGTAAAGTAATTGTTTTTTCTTTTTAAATTTTAAATTGGAGAACTTAACATAAACATGTTTGGTTACATAAATAGTCTATGATTTGAATTATTTTGAATTCATTAAGGTTTAAGTTTCGATACCAAATAATTTGTGTAATTGTTGATGATGAAAGTGATGATGAAAGT

mRNA sequence

CAAACAATATTAGGGTTTCTTCCCCTTTCCCTGGGATCGAGCAGCAGTAGCACCACCAGCAACACACAAGCCGCAGCCGCGTAGCCACCCGCCAGAACACTTCAATGGCTTCGGAGAGGAAGTTATCGAACACCATGAGGGATATTAAGGTGCAGAAGCTCGTTCTCAATATCTCAGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCTGCCAAGGTGCTCGAGCAACTAAGCGGCCAGAGCCCTGTGTTCTCTAAGGCTAGATACACTGTGCGTTCATTTGGAATCAGACGTAATGAGAAGATTGCTTGCTATGTCACCGTTAGAGGCGAGAAGGCTATGCAGCTTTTGGAAAGTGGGTTGAAGGTTAAGGAGTACGAGTTGCTTCGCAGGAACTTCAGTGACACTGGATGCTTTGGCTTTGGTATTCAAGAACACATTGATCTTGGAATCAAGTACGATCCATCCACCGGTATCTACGGTATGGACTTCTTTGTTGTCTTGGAGCGACCAGGATACCGTGTGGGGCGTCGCAGGAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACGAAGGAGGACGCCATGAAGTGGTTCCAGGTGAAATACGAGGGAGTTATTCTTAACAAGTCTCAGCAACTCACTGGTTAAGTGTTATAAAATTTTGTGCTTTTACCATTAGCCTGACTGAAGCTCTTTATTATTGTTTTTTTTTCTTTGGATATTTTTCGGCTTTAATGAAAGATTATTAGAATCAATTTGAGAACATTTTAAGCTGTTGGCAGTCTTATGTTTTAGTAATTTGAGAACATTTTAAGCTGTAAAGTAATTGTTTTTTCTTTTTAAATTTTAAATTGGAGAACTTAACATAAACATGTTTGGTTACATAAATAGTCTATGATTTGAATTATTTTGAATTCATTAAGGTTTAAGTTTCGATACCAAATAATTTGTGTAATTGTTGATGATGAAAGTGATGATGAAAGT

Coding sequence (CDS)

ATGGCTTCGGAGAGGAAGTTATCGAACACCATGAGGGATATTAAGGTGCAGAAGCTCGTTCTCAATATCTCAGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCTGCCAAGGTGCTCGAGCAACTAAGCGGCCAGAGCCCTGTGTTCTCTAAGGCTAGATACACTGTGCGTTCATTTGGAATCAGACGTAATGAGAAGATTGCTTGCTATGTCACCGTTAGAGGCGAGAAGGCTATGCAGCTTTTGGAAAGTGGGTTGAAGGTTAAGGAGTACGAGTTGCTTCGCAGGAACTTCAGTGACACTGGATGCTTTGGCTTTGGTATTCAAGAACACATTGATCTTGGAATCAAGTACGATCCATCCACCGGTATCTACGGTATGGACTTCTTTGTTGTCTTGGAGCGACCAGGATACCGTGTGGGGCGTCGCAGGAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACGAAGGAGGACGCCATGAAGTGGTTCCAGGTGAAATACGAGGGAGTTATTCTTAACAAGTCTCAGCAACTCACTGGTTAA

Protein sequence

MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQLTG
Homology
[Close]
BLAST of Carg19146 vs. NCBI nr
Match: XP_022930772.1 (60S ribosomal protein L11-1-like isoform X2 [Cucurbita moschata] >XP_022988965.1 60S ribosomal protein L11-1-like isoform X2 [Cucurbita maxima] >XP_023532025.1 60S ribosomal protein L11-1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.4 bits (934), Expect = 2.3e-97
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Carg19146 vs. NCBI nr
Match: XP_022930771.1 (60S ribosomal protein L11-like isoform X1 [Cucurbita moschata] >XP_022988964.1 60S ribosomal protein L11-like isoform X1 [Cucurbita maxima] >XP_023532023.1 60S ribosomal protein L11-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362.8 bits (930), Expect = 6.6e-97
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0 

Query: 2   ASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 61
           ASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI
Sbjct: 4   ASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 63

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 64  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 123

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQLT 181
           TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQLT
Sbjct: 124 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQLT 183

Query: 182 G 183
           G
Sbjct: 184 G 184

[Close]
BLAST of Carg19146 vs. NCBI nr
Match: XP_004133952.1 (PREDICTED: 60S ribosomal protein L11-1 isoform X2 [Cucumis sativus] >XP_008438244.1 PREDICTED: 60S ribosomal protein L11-1-like isoform X2 [Cucumis melo] >KGN56659.1 hypothetical protein Csa_3G127210 [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 4.3e-96
Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQ+
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Carg19146 vs. NCBI nr
Match: XP_004133951.1 (PREDICTED: 60S ribosomal protein L11 isoform X1 [Cucumis sativus] >XP_008438243.1 PREDICTED: 60S ribosomal protein L11-like isoform X1 [Cucumis melo])

HSP 1 Score: 358.6 bits (919), Expect = 1.2e-95
Identity = 178/181 (98.34%), Postives = 180/181 (99.45%), Query Frame = 0 

Query: 2   ASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 61
           ASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI
Sbjct: 4   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 63

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 64  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 123

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQLT 181
           TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQ+T
Sbjct: 124 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIT 183

Query: 182 G 183
           G
Sbjct: 184 G 184

[Close]
BLAST of Carg19146 vs. NCBI nr
Match: XP_022148026.1 (60S ribosomal protein L11 isoform X2 [Momordica charantia])

HSP 1 Score: 357.8 bits (917), Expect = 2.1e-95
Identity = 178/182 (97.80%), Postives = 180/182 (98.90%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQAI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Carg19146 vs. TAIR10
Match: AT2G42740.1 (ribosomal protein large subunit 16A)

HSP 1 Score: 350.1 bits (897), Expect = 8.0e-97
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Carg19146 vs. TAIR10
Match: AT3G58700.1 (Ribosomal L5P family protein)

HSP 1 Score: 350.1 bits (897), Expect = 8.0e-97
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Carg19146 vs. TAIR10
Match: AT4G18730.1 (ribosomal protein L16B)

HSP 1 Score: 350.1 bits (897), Expect = 8.0e-97
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Carg19146 vs. TAIR10
Match: AT5G45775.2 (Ribosomal L5P family protein)

HSP 1 Score: 350.1 bits (897), Expect = 8.0e-97
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Carg19146 vs. TAIR10
Match: AT4G01310.1 (Ribosomal L5P family protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-06
Identity = 34/138 (24.64%), Postives = 71/138 (51.45%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQSPVFSKARYTVR 60
           +  E K  N  +  KVQK+V+N  +G++      L  A K +  ++GQ P+ ++AR ++ 
Sbjct: 71  LKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIA 130

Query: 61  SFGIRRNEKIACYVTVRGEKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEH 120
           +F IR ++ +   VT+RG+     L+  +     + ++++ +   +F   G +  G+++ 
Sbjct: 131 TFKIREDQPLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQ 190

Query: 121 -IDLGIKYDPSTGIYGMD 129
            +   I++D      GMD
Sbjct: 191 GVFPEIRFDAVGKTRGMD 208

[Close]
BLAST of Carg19146 vs. Swiss-Prot
Match: sp|P42795|RL111_ARATH (60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2)

HSP 1 Score: 350.1 bits (897), Expect = 1.5e-95
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Carg19146 vs. Swiss-Prot
Match: sp|P42794|RL112_ARATH (60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2)

HSP 1 Score: 350.1 bits (897), Expect = 1.5e-95
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Carg19146 vs. Swiss-Prot
Match: sp|P46287|RL11_MEDSA (60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 1.2e-94
Identity = 171/180 (95.00%), Postives = 178/180 (98.89%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDFFVVLERPGYRVGRRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180

[Close]
BLAST of Carg19146 vs. Swiss-Prot
Match: sp|A2YDY2|RL11_ORYSI (60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 SV=2)

HSP 1 Score: 339.3 bits (869), Expect = 2.6e-92
Identity = 169/181 (93.37%), Postives = 175/181 (96.69%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+K SN MR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLER GYRV RRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNK+Q  
Sbjct: 121 STGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180

Query: 181 T 182
           T
Sbjct: 181 T 181

[Close]
BLAST of Carg19146 vs. Swiss-Prot
Match: sp|Q0DK10|RL11_ORYSJ (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 2.6e-92
Identity = 169/181 (93.37%), Postives = 175/181 (96.69%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+K SN MR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLER GYRV RRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNK+Q  
Sbjct: 121 STGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQAN 180

Query: 181 T 182
           T
Sbjct: 181 T 181

[Close]
BLAST of Carg19146 vs. TrEMBL
Match: tr|A0A1S3AW09|A0A1S3AW09_CUCME (60S ribosomal protein L11-1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483409 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 2.8e-96
Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQ+
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Carg19146 vs. TrEMBL
Match: tr|A0A0A0L6K1|A0A0A0L6K1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127210 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 2.8e-96
Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQ+
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Carg19146 vs. TrEMBL
Match: tr|A0A1S3AVK5|A0A1S3AVK5_CUCME (60S ribosomal protein L11-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483409 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 8.2e-96
Identity = 178/181 (98.34%), Postives = 180/181 (99.45%), Query Frame = 0 

Query: 2   ASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 61
           ASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI
Sbjct: 4   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 63

Query: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121
           RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 64  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 123

Query: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQLT 181
           TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQ+T
Sbjct: 124 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIT 183

Query: 182 G 183
           G
Sbjct: 184 G 184

[Close]
BLAST of Carg19146 vs. TrEMBL
Match: tr|A0A200R2R8|A0A200R2R8_9MAGN (Ribosomal protein L5 OS=Macleaya cordata OX=56857 GN=BVC80_9043g45 PE=3 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 5.3e-95
Identity = 176/182 (96.70%), Postives = 180/182 (98.90%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDF+VVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFYVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Carg19146 vs. TrEMBL
Match: tr|A0A2I4HLX5|A0A2I4HLX5_9ROSI (60S ribosomal protein L11 OS=Juglans regia OX=51240 GN=LOC109019293 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 7.0e-95
Identity = 176/182 (96.70%), Postives = 180/182 (98.90%), Query Frame = 0 

Query: 1   MASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFG 60
           MASERKLSN MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ+PVFSKARYTVRSFG
Sbjct: 1   MASERKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQNPVFSKARYTVRSFG 60

Query: 61  IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
           IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61  IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120

Query: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQL 180
           STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ +
Sbjct: 121 STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 180

Query: 181 TG 183
           TG
Sbjct: 181 TG 182

The following BLAST results are available for this feature:
BLAST of Carg19146 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022930772.12.3e-97100.0060S ribosomal protein L11-1-like isoform X2 [Cucurbita moschata] >XP_022988965.1... [more]
XP_022930771.16.6e-97100.0060S ribosomal protein L11-like isoform X1 [Cucurbita moschata] >XP_022988964.1 6... [more]
XP_004133952.14.3e-9698.35PREDICTED: 60S ribosomal protein L11-1 isoform X2 [Cucumis sativus] >XP_00843824... [more]
XP_004133951.11.2e-9598.34PREDICTED: 60S ribosomal protein L11 isoform X1 [Cucumis sativus] >XP_008438243.... [more]
XP_022148026.12.1e-9597.8060S ribosomal protein L11 isoform X2 [Momordica charantia][more]
BLAST of Carg19146 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42740.18.0e-9794.51ribosomal protein large subunit 16A[more]
AT3G58700.18.0e-9794.51Ribosomal L5P family protein[more]
AT4G18730.18.0e-9794.51ribosomal protein L16B[more]
AT5G45775.28.0e-9794.51Ribosomal L5P family protein[more]
AT4G01310.11.0e-0624.64Ribosomal L5P family protein[more]
BLAST of Carg19146 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P42795|RL111_ARATH1.5e-9594.5160S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2[more]
sp|P42794|RL112_ARATH1.5e-9594.5160S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2[more]
sp|P46287|RL11_MEDSA1.2e-9495.0060S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1[more]
sp|A2YDY2|RL11_ORYSI2.6e-9293.3760S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 S... [more]
sp|Q0DK10|RL11_ORYSJ2.6e-9293.3760S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2... [more]
BLAST of Carg19146 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AW09|A0A1S3AW09_CUCME2.8e-9698.3560S ribosomal protein L11-1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483... [more]
tr|A0A0A0L6K1|A0A0A0L6K1_CUCSA2.8e-9698.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127210 PE=3 SV=1[more]
tr|A0A1S3AVK5|A0A1S3AVK5_CUCME8.2e-9698.3460S ribosomal protein L11-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348340... [more]
tr|A0A200R2R8|A0A200R2R8_9MAGN5.3e-9596.70Ribosomal protein L5 OS=Macleaya cordata OX=56857 GN=BVC80_9043g45 PE=3 SV=1[more]
tr|A0A2I4HLX5|A0A2I4HLX5_9ROSI7.0e-9596.7060S ribosomal protein L11 OS=Juglans regia OX=51240 GN=LOC109019293 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR020929Ribosomal_L5_CS
IPR002132Ribosomal_L5
IPR022803Ribosomal_L5_dom_sf
IPR031309Ribosomal_L5_C
IPR031310Ribosomal_L5_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19146-RACarg19146-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031310Ribosomal protein L5, N-terminalPFAMPF00281Ribosomal_L5coord: 9..62
e-value: 2.2E-19
score: 69.4
IPR031309Ribosomal protein L5, C-terminalPFAMPF00673Ribosomal_L5_Ccoord: 66..164
e-value: 1.1E-20
score: 73.4
IPR022803Ribosomal protein L5 domain superfamilyGENE3DG3DSA:3.30.1440.10coord: 1..177
e-value: 1.0E-84
score: 284.7
IPR022803Ribosomal protein L5 domain superfamilySUPERFAMILYSSF55282RL5-likecoord: 9..173
IPR002132Ribosomal protein L5PIRSFPIRSF002161RPL5p_RPL5a_RPL11e_RPL5ocoord: 1..172
e-value: 5.7E-42
score: 141.2
IPR002132Ribosomal protein L5PANTHERPTHR1199460S RIBOSOMAL PROTEIN L11-RELATEDcoord: 1..179
NoneNo IPR availablePANTHERPTHR11994:SF15SUBFAMILY NOT NAMEDcoord: 1..179
IPR020929Ribosomal protein L5, conserved sitePROSITEPS00358RIBOSOMAL_L5coord: 39..55

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19146Cla002246Watermelon (97103) v1carwmB0717
Carg19146ClCG07G002650Watermelon (Charleston Gray)carwcgB0697
Carg19146CmoCh11G019830Cucurbita moschata (Rifu)carcmoB0979
Carg19146CmoCh19G010480Cucurbita moschata (Rifu)carcmoB0981
Carg19146Lsi11G017220Bottle gourd (USVL1VR-Ls)carlsiB660
Carg19146Cp4.1LG04g02860Cucurbita pepo (Zucchini)carcpeB1015
Carg19146Cp4.1LG15g08280Cucurbita pepo (Zucchini)carcpeB1013
Carg19146Cla97C01G023800Watermelon (97103) v2carwmbB0750
Carg19146Cla97C03G058830Watermelon (97103) v2carwmbB0753
Carg19146Cla97C07G130980Watermelon (97103) v2carwmbB0754
Carg19146Bhi08G001781Wax gourdcarwgoB0850
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg19146Carg15737Silver-seed gourdcarcarB501
The following block(s) are covering this gene:
GeneOrganismBlock
Carg19146Silver-seed gourdcarcarB176
Carg19146Silver-seed gourdcarcarB590
Carg19146Cucumber (Gy14) v2carcgybB0717
Carg19146Cucumber (Gy14) v1carcgyB0809
Carg19146Cucumber (Gy14) v1carcgyB0811
Carg19146Cucurbita maxima (Rimu)carcmaB1006
Carg19146Cucurbita maxima (Rimu)carcmaB1007
Carg19146Cucurbita maxima (Rimu)carcmaB1008
Carg19146Cucurbita maxima (Rimu)carcmaB1009
Carg19146Cucurbita moschata (Rifu)carcmoB0980
Carg19146Cucurbita moschata (Rifu)carcmoB0982
Carg19146Cucurbita pepo (Zucchini)carcpeB1014
Carg19146Wild cucumber (PI 183967)carcpiB0755
Carg19146Cucumber (Chinese Long) v2carcuB0739
Carg19146Cucumber (Chinese Long) v3carcucB0758
Carg19146Melon (DHL92) v3.5.1carmeB0715
Carg19146Melon (DHL92) v3.6.1carmedB0728
Carg19146Wax gourdcarwgoB0847