Cp4.1LG04g00300 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g00300
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	mRNA turnover protein 4 like
Location	Cp4.1LG04 : 1889082 .. 1893157 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGACACCTATTTATACCCTTAAAACCTTCTTTCCGCCCTCACTCATCATAGCCAGCCGCATCACTCACTTTTATCGCCGTTTCCTTCTACGCCCTATCGGTAAGCCCTCCCTCGCCCTCTCCGGTAACCCTCGTTCTTCTCGTTCTTCTCGTTCTTCTTCTCTCTTTCTCCCTCACGGAACTTATGAATCTGCCGTCTTAGCAGGTACCGAAGTTATTTGCAACGATCAAAGATGCCCAAGTCGAAGCGTGATAGACCAGGTCCGTTTTCATAGCTTTGCTCATATTCATGCCTAAATCGCTCTTCTTTTGGATATAAAAGAATTTGGTATTTGTTAGGGTAGGTATTGTTTAGGTTTGAGATCATATTGATATCTCTTCACCAGTAATTGAGAGATTTCACACTTTACCTTCGTTCTTACGGTAGTCCTACATGTTCATAGTACGTTTCCTGGTAGGTCAGATTTACGAAAGAATTTTGATTGCTTAGTATTTTAGCTCCATATTTTTCTTCTAAGGTTCTTCCACGTTCTAAAGAAGTATGCACTGTGTTACTTGAGCAAACATTTCAAGAGTGTGGAATTTGTGGGGATATCCTATTAGTGGGTTGGTTACAACTTGATGGTCTGTGTTTGTTAAAATTTGAGGAATAACTTGAGTATCTATTGTGTTAGGCTGAGGTAGACAGGGCTGTAGACAAGCCTCAAGCACGTTTTCGCTGATTGTAGGAGTCGCTGTAGTTTGCCTCAGAAGTTAGTTTGAGCTTTATAGTGTGATGGAAGAACCATTGTAGTATAAGGTGTTTCCAAGGGGTGGCTGAGGTGAAAGGTTTCTGTCTATATGCAAAATGTAGAGTTGCTTACAACACAGGGAGCTAAAGTTAAACACAGATCAATTTTTTAAATAAGAATAAGGAATATTTTTAGTAGGGTAATGAATGTTGTTAAAGAGAAACCAAACTGTGAATCTGGTTGAACTTAATGACTGCTTTAACATTAGAAATATGCTTAAATTTGTTATTTTAATTCGAGGTTTTTGTTAAACTATGGGCTAGTCTGTCTGAGTTATGTTCTTGTCAAAAGTACTATGCAATTTAAGAATTTAAATGACATGTGGTGGTTGTATTCAGTGTCAAATATGTGTGGGTTTTTAGTTAATAGAGGAAAAATTCAACAATTCAGTCTACTGTCAACTGTTTTGACTAATTGTTTGCTGTTTGATGGGATAAATGCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTAATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAACTAAAGTCGTCTAGCAGGCAAGTTGTATTTTCTGACTTTTTTTATTGTATATTTTCTGCATCACTTCAAATATTAATTAGTGATGAGAATGTTACTTCCTATATGTTGTTTGATTTGTGTTTTGTTGGAAGAAAGGAGAAAATGAAAATATTGAATGGCATGTTTTAGAACTTGAATAAAAATGAATAGCATGTTCTAGGAGAAAAGATGAGACCATTTGGTAACAGGTTATGGTAACAGCATTGCTTTATGATCTTAAATGTAGTATCTGTTGATATGATTACAGAGCAACCTTCTGTCCTTGTTTTAAGAAGCGTCAATCAAAAAAGGTTTACAACCTTCATCGTCCTTCTTCCCCTTGTGCTTGATGTGGTCTCACCTGGGGCTGCAGCTTGTATACATTTGTTCTCTTTATTCTTTTTCCCTTTTTAAGCATGAATGATATGAAAAATATATTAACTCACCTTGGAATTATATTTTAGCCGTACATTATTGTCTTTGGCCTCTGATGCTTGTCTACATTTTTGAAGTGTAGAAATGTTTAAGCCTCTGGTCACTAATTGGGATATTTTGTTTGTGAACTTTGTTTAGTGCAATTTTTGAAGTGATGCTGCATTTGAGTGGCGCTCACTCTATTTCTCTAATGAAATGATTTTGACCTTATCTGACCTGACTGTACCTTACATGGATTCCCAAATTGATTTTCTTTTCTCTCATGGATAGATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCCGAAGAGATTCAACCAGGCCTATACAAGGTTTCTAAGGTGAACCACTTTTTCCATATTGCATATAATTCAAGTGCTCTTTTTCTTTGTAACTTTAACGAATTAACATCCACTCTTCTATTTTTCAGCTTCTGCATGGCAATACTGGACTTTGTTTCACAAACTTACCGAAAGAAGAGGTTGAGAGGTAAACCAGACATGCTCTAGTTTTAACATTGGCAAGCACCGCCAAAAGCGATGAATTGTTAAGTTGCTATTTTGTTTTACAATTTAAATGCGCATATTTAAAATTTATTCATTATGTGTTCTTTTTTTGTTTTAGAAATTGAAGTATCTGATAAATTGTAGTTTCAGTTGATTTCCATATCTATGAATACAACATTCTGAAGTTTTGATTTGGGAAAGACTGTTAAAAGTGAACATAATTATTTTGGTGTTGGAAAGAACAAAAAAGAAAATGTTAAATCCTTGAAGTTGAAGTTTTAAAAAATTGAAACTGGTTCGTCTTCAAGGTCAAAACAAATTTCCAACTTCATATTGTCACATGCTTATGATGATTTTTCTGTGCTAAATTCGGTTGGAAGTCCTACTACCCTACTAGTGGAAAATGAATAAAGAAACCCAAAACAGAAACAAAAGAAGATTGTTTCTGTCAGTAGTAAGATTCTCTTAATGGGTTATTTACATTTCAATTTTAAAATAAGGGATTTCTGTATTTGATTTGGTTTACATTAATGCTTGATTTAATTTTCAATGTTTTGTTCTGCAGATTATTTAACGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGAAGCCACAGAAAAGGTTTCTGCCCCTTTTGAAATCAACTTATTTTAATTTTTCATCATTCTAATACTGATGTCACTTTTTGAGTGCACTGATTCAACAAAAAGGTCTAGAATCATTCCATATCGTTAGTGTTATAACATGCATGAACTTGGTGGTTGGTTTCCTTATCGAAGTTCAATGATATTAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTCAGCCATGAAATGGAGCCTTCTCTACGGAAGCTTGGATTGCCAGTTCGCTTGAACAAGGGTCAGTAAACACACTTTTTGCTTGCAAGCCCTACTTATTGACGTAAACACACACTTTTTGCTTGCAAGCCTTACTTATGATAAACAAAAATTTGGTTGTAAATCATAATTGTTGAGGGAATTGCAGGTGTGGTGGAGCTTGTATCGGACTTTACTGTATGTGAGGAGGGCAAGTCTCTTTCACCAGAGTCAGCTGGCATACTGGTTTGTATCATTTCACGACTTTCTCTTTCTTTATATATATATATATATATATATATATATTGAATATGAATGCCTTGTAAACGAGGTTTGAAGTAGCACTTATTGATATCGATGTCGATATTTGTTTGGTTGCAGCGTGCGTTGGGGATAAGGATGGCAACTTTTCGCCTGAATTTGGTATGCAGGTGGAGTCCTGGTGAGTTTGAACTTTACATTGATGGACCAGATAATTCTGACATTGAAACTGCGTAGAAGAACCCCCAACACAATATTTTCCGATTAGAATTATATATATATATGGGATGGACGGATGAATGAATGCATGGATGAATGACTCTCCCCTAGGATTAGATGCTATAATTTGAATGGGATCGGGACATCTCTTTTCTTTCTTTCTTTCTTTTGTGTAAATTATTCAAGAAATTTTGAAGGGCATGTGCCCAAATCTTCAGTTTTGTTGTCTCTAGTGAGGATGAACGGATGTAACTGTGACTGGTTGGTAGATTTTGATTTGTATTATTGCCAGATCGTTGGTCTTTAAATTCTTCAAATATAGTATAGTATTATTTTATGAAATTCTGTATGTGTTATTTATTAGCTTAATGTAATGAGACCGAAGAAT

mRNA sequence

GAGACACCTATTTATACCCTTAAAACCTTCTTTCCGCCCTCACTCATCATAGCCAGCCGCATCACTCACTTTTATCGCCGTTTCCTTCTACGCCCTATCGGTACCGAAGTTATTTGCAACGATCAAAGATGCCCAAGTCGAAGCGTGATAGACCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTAATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAACTAAAATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCCGAAGAGATTCAACCAGGCCTATACAAGGTTTCTAAGCTTCTGCATGGCAATACTGGACTTTGTTTCACAAACTTACCGAAAGAAGAGGTTGAGAGATTATTTAACGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGAAGCCACAGAAAAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTCAGCCATGAAATGGAGCCTTCTCTACGGAAGCTTGGATTGCCAGTTCGCTTGAACAAGGGTGTGGTGGAGCTTGTATCGGACTTTACTGTATGTGAGGAGGGCAAGTCTCTTTCACCAGAGTCAGCTGGCATACTGCGTGCGTTGGGGATAAGGATGGCAACTTTTCGCCTGAATTTGGTATGCAGGTGGAGTCCTGGTGAGTTTGAACTTTACATTGATGGACCAGATAATTCTGACATTGAAACTGCGTAGAAGAACCCCCAACACAATATTTTCCGATTAGAATTATATATATATATGGGATGGACGGATGAATGAATGCATGGATGAATGACTCTCCCCTAGGATTAGATGCTATAATTTGAATGGGATCGGGACATCTCTTTTCTTTCTTTCTTTCTTTTGTGTAAATTATTCAAGAAATTTTGAAGGGCATGTGCCCAAATCTTCAGTTTTGTTGTCTCTAGTGAGGATGAACGGATGTAACTGTGACTGGTTGGTAGATTTTGATTTGTATTATTGCCAGATCGTTGGTCTTTAAATTCTTCAAATATAGTATAGTATTATTTTATGAAATTCTGTATGTGTTATTTATTAGCTTAATGTAATGAGACCGAAGAAT

Coding sequence (CDS)

ATGCCCAAGTCGAAGCGTGATAGACCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTAATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAACTAAAATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCCGAAGAGATTCAACCAGGCCTATACAAGGTTTCTAAGCTTCTGCATGGCAATACTGGACTTTGTTTCACAAACTTACCGAAAGAAGAGGTTGAGAGATTATTTAACGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGAAGCCACAGAAAAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTCAGCCATGAAATGGAGCCTTCTCTACGGAAGCTTGGATTGCCAGTTCGCTTGAACAAGGGTGTGGTGGAGCTTGTATCGGACTTTACTGTATGTGAGGAGGGCAAGTCTCTTTCACCAGAGTCAGCTGGCATACTGCGTGCGTTGGGGATAAGGATGGCAACTTTTCGCCTGAATTTGGTATGCAGGTGGAGTCCTGGTGAGTTTGAACTTTACATTGATGGACCAGATAATTCTGACATTGAAACTGCGTAG

Protein sequence

MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKLFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA

Homology

[Close]

BLAST of Cp4.1LG04g00300 vs. Swiss-Prot
Match: MRT4_BOVIN (mRNA turnover protein 4 homolog OS=Bos taurus GN=MRTO4 PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.6e-54
Identity = 106/208 (50.96%), Postives = 146/208 (70.19%), Query Frame = 1


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  K---LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
           K   +FFG NKVM V+LGR+ S+E +  L++VSK L G  GL FTN  KEEV+  F +Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + DYAR G++AT  V L  GPLEQF H MEP LR+LGLP  L KGVV L+SD+ VC+EG 
Sbjct: 121 EMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRW 206
            L+PE A +L+  G  MA F++++   W
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVSIKYMW 208

[Close]

BLAST of Cp4.1LG04g00300 vs. Swiss-Prot
Match: MRT4_HUMAN (mRNA turnover protein 4 homolog OS=Homo sapiens GN=MRTO4 PE=1 SV=2)

HSP 1 Score: 209.1 bits (531), Expect = 4.9e-53
Identity = 104/208 (50.00%), Postives = 143/208 (68.75%), Query Frame = 1


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  K---LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
           K   +FFG NKVM V+LGR+ S+E +  L++VSK L G  GL FTN  KEEV   F +Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + DYAR G++A   V L  GPLEQF H MEP LR+LGLP  L +GVV L+SD+ VC+EG 
Sbjct: 121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRW 206
            L+PE A +L+  G  MA F++ +   W
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVTIKYMW 208

[Close]

BLAST of Cp4.1LG04g00300 vs. Swiss-Prot
Match: MRT4_MOUSE (mRNA turnover protein 4 homolog OS=Mus musculus GN=Mrto4 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 8.3e-53
Identity = 105/208 (50.48%), Postives = 144/208 (69.23%), Query Frame = 1


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  K---LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
           K   +FFG NKVM V+LGR+ S+E +  L++VSK L G  GL FTN  KEEV   F +Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + D+AR G++AT  V L  GPL+QF H MEP LR+LGLP  L KGVV L+SD+ VC+EG 
Sbjct: 121 EMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRW 206
            L+PE A IL+  G  MA F++ +   W
Sbjct: 181 VLTPEQARILKLFGYEMAEFKVIIKYMW 208

[Close]

BLAST of Cp4.1LG04g00300 vs. Swiss-Prot
Match: MRT4_DICDI (Ribosome assembly factor mrt4 OS=Dictyostelium discoideum GN=mrt4 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.8e-39
Identity = 84/215 (39.07%), Postives = 130/215 (60.47%), Query Frame = 1


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           M KSKR+  V ++K  K   E KK +V  I+  V+ Y  IY+FT ENMRN K K +R + 
Sbjct: 1   MVKSKRNVVVNMTKVTKNPGEKKKKLVSTIKDIVDQYKFIYLFTFENMRNNKLKSVRTEW 60

Query: 61  ---KLFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
              K  FG NKV+ V LG++  +E++P L+K+++ L G  GL FTN PK++V   F  Y 
Sbjct: 61  STSKFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYS 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + D+ R+G  + E + +KEGP+   +H ME  LR LGLP  L  GV+ +  ++T+CE G 
Sbjct: 121 EKDFPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAGV 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRWSPGEFEL 213
           +++PE + +L+     ++ F+ ++   W+  EF L
Sbjct: 181 AVTPEQSQLLKLFNHEISEFKFHIKGFWNEDEFTL 215

[Close]

BLAST of Cp4.1LG04g00300 vs. Swiss-Prot
Match: MRT4_NEUCR (Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mrt4 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.3e-34
Identity = 83/233 (35.62%), Postives = 127/233 (54.51%), Query Frame = 1


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKR +   L++  KK RE K+ + + IR+ + NY   +VF+++NMRN   K++R++L
Sbjct: 1   MPKSKRAKVYNLTQVTKKNREQKEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKEL 60

Query: 61  ---KLFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
              ++FFG  K+   +LG T  +    GL K+SK L G+ GL FTN    E++  F    
Sbjct: 61  NDCRIFFGKTKLTARALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKDYFVNLT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQ------------FSHEMEPSLRKLGLPVRLNKGVVE 180
             D+AR GS AT  + +  GPL               SH +EP LR+LG+P R+ KG V 
Sbjct: 121 QVDFARAGSVATRTITIPSGPLYSTGGEVPAEHDVPVSHTLEPELRRLGMPTRMVKGKVC 180

Query: 181 L------VSDFTVCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFEL 213
           L        D+ +C+EG++L      +L+   I ++ FR+ L+  WS    E+
Sbjct: 181 LGDEAGEGDDYVICKEGETLDSRQTRLLKLFSICLSEFRVKLLAYWSAASGEV 233

[Close]

BLAST of Cp4.1LG04g00300 vs. TrEMBL
Match: M5XU08_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010931mg PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 3.0e-94
Identity = 173/229 (75.55%), Postives = 204/229 (89.08%), Query Frame = 1


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHK+++V+ IRQA E+Y+S+YVF+ ENMRNLKFKE R+QL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKETIVNSIRQAAEDYSSVYVFSFENMRNLKFKEFRDQL 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K     F G+NKVMQ+SLGR+ S+EI+P L+K+SK+LHGN GLCFTNLPKEEVERLF+EY
Sbjct: 61  KSTSRFFLGSNKVMQISLGRSDSDEIRPDLHKISKVLHGNAGLCFTNLPKEEVERLFSEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            +YD+ARTGS ATEKVEL+EGPLEQF+HEMEP LRK G+PVRLNKGVVELVSDF VC+EG
Sbjct: 121 KEYDFARTGSIATEKVELQEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFLVCDEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 226
           K LSPESA ILR LGI+MATFRL+L+ RWSPGEFELY  GPD+S +E++
Sbjct: 181 KPLSPESARILRLLGIKMATFRLHLISRWSPGEFELYGPGPDDSGVESS 229

[Close]

BLAST of Cp4.1LG04g00300 vs. TrEMBL
Match: A0A0A0LM77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302060 PE=3 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 8.8e-94
Identity = 175/207 (84.54%), Postives = 190/207 (91.79%), Query Frame = 1


Query: 26  MVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLK-------LFFGANKVMQVSLGRTA 85
           MV+LIRQAVENYNS++VFTVENMRNLKFKELREQLK       L   +NKVMQ+SLGR+ 
Sbjct: 1   MVELIRQAVENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLLPDFSNKVMQISLGRSD 60

Query: 86  SEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEATEKVELKEGP 145
           S+EI+PGL+KVSKLLHGNTGLCFTNLPKEEVERLFNEY DYDYARTGS A+EKVELKEGP
Sbjct: 61  SDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGP 120

Query: 146 LEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGKSLSPESAGILRALGIRMATFR 205
           L QFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEGKSLSPESAGILRALG+R A FR
Sbjct: 121 LGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLRTAIFR 180

Query: 206 LNLVCRWSPGEFELYIDGPDNSDIETA 226
           LNLVCRWSPG+FELYIDGP+NSD+E+A
Sbjct: 181 LNLVCRWSPGDFELYIDGPENSDVESA 207

[Close]

BLAST of Cp4.1LG04g00300 vs. TrEMBL
Match: D7T050_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g01000 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 1.2e-93
Identity = 174/229 (75.98%), Postives = 203/229 (88.65%), Query Frame = 1


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR HK+S+V+ IRQAVENY+SIYVF+ ENMRNLKFKE RE+L
Sbjct: 1   MPKSKRDRPVTLSKTKKKGRGHKESIVNSIRQAVENYSSIYVFSFENMRNLKFKEFREKL 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K     F G+NKVMQ+++GR+ ++EI+PGL KVSKLLHG+TGL FTNLPKEEV+RLFNEY
Sbjct: 61  KSTSRFFLGSNKVMQIAIGRSVADEIRPGLRKVSKLLHGDTGLFFTNLPKEEVQRLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            +YD+ARTGS A EKVELKEGPL+QF+HEMEP LRK G+PVRLNKGVVELVSDF VCEEG
Sbjct: 121 EEYDFARTGSTAVEKVELKEGPLDQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 226
             LSPESA ILR LGI+MATFRL+LVCRWSP EF+LY +G D+SD+E++
Sbjct: 181 TPLSPESARILRLLGIKMATFRLHLVCRWSPDEFDLYKEGLDDSDVESS 229

[Close]

BLAST of Cp4.1LG04g00300 vs. TrEMBL
Match: V4T6N9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002376mg PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.4e-91
Identity = 173/228 (75.88%), Postives = 196/228 (85.96%), Query Frame = 1


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKG+EHK+ +V+ IR AVENY SIYVF+ ENMRNLKFKE REQ+
Sbjct: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60

Query: 61  K---LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
           K    F G+NKVMQV+LGR+ S+EIQPGL KVSK L GNTGL  TN+PKEEVE LFN+Y 
Sbjct: 61  KPSRFFLGSNKVMQVALGRSVSDEIQPGLNKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           DYD+ARTGS ATEKVEL EGPLEQF+HEMEP LRK G+PVRLNKGVVELVSDF VCEEGK
Sbjct: 121 DYDFARTGSMATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 226
            LSPESA ILR LGI+MATF+L+L+CRWS  +FELY +G D SD+E+A
Sbjct: 181 PLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDESDVESA 228

[Close]

BLAST of Cp4.1LG04g00300 vs. TrEMBL
Match: A0A151T7Y5_CAJCA (mRNA turnover protein 4 isogeny OS=Cajanus cajan GN=KK1_017712 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.0e-90
Identity = 167/227 (73.57%), Postives = 197/227 (86.78%), Query Frame = 1


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKR+R VTLSKTKKKGR+HK+++V+ I++A E Y  +YVF+ ENMRN KFKE REQL
Sbjct: 1   MPKSKRNRQVTLSKTKKKGRDHKETIVNGIKEAAEKYGWVYVFSFENMRNQKFKEFREQL 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K     F G+NKVMQV+LGR+A++EI+PGL+KVSKLL G+ G+  TNLPKEEVERLF E+
Sbjct: 61  KSSSRFFLGSNKVMQVALGRSAADEIRPGLHKVSKLLRGDAGMVCTNLPKEEVERLFKEF 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            +YD+ARTGS ATEKV+LKEGPLEQF+HEMEP LRK G+PVRLNKGVVELVSDF VCEEG
Sbjct: 121 EEYDFARTGSNATEKVDLKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIE 224
           K LSPE+A ILR +GI+MATFRLNL+CRWSP EFELYIDGPD SD+E
Sbjct: 181 KPLSPEAARILRLMGIKMATFRLNLICRWSPDEFELYIDGPDESDVE 227

[Close]

BLAST of Cp4.1LG04g00300 vs. TAIR10
Match: AT1G25260.1 (AT1G25260.1 Ribosomal protein L10 family protein)

HSP 1 Score: 314.7 bits (805), Expect = 4.6e-86
Identity = 159/235 (67.66%), Postives = 192/235 (81.70%), Query Frame = 1


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHK+ +V+ IR+AVE Y+S+YVF+ ENMRN+KFKE R+Q 
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60

Query: 61  ----KLFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
               K F G+NKVMQV+LGR+A +E++ G+YKVSKLL G+TGL  T++PKEEVE LFN Y
Sbjct: 61  RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            D D++RTGS A E VELKEGPLEQF+HEMEP LRKL +PVRLNKG VELV+DF VCEEG
Sbjct: 121 EDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDG------PDNSDIETA 226
           K LSP+SA ILR L ++MATF+LNL+CRWSP +FELY +        D SD+ET+
Sbjct: 181 KQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELYREDLSELYREDLSDVETS 235

[Close]

BLAST of Cp4.1LG04g00300 vs. NCBI nr
Match: gi|778670193|ref|XP_011649395.1| (PREDICTED: mRNA turnover protein 4 homolog [Cucumis sativus])

HSP 1 Score: 408.7 bits (1049), Expect = 6.7e-111
Identity = 203/229 (88.65%), Postives = 218/229 (95.20%), Query Frame = 1


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HKKSMV+LIRQAVENYNS++VFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K    LFFGANKVMQ+SLGR+ S+EI+PGL+KVSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            DYDYARTGS A+EKVELKEGPL QFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEG
Sbjct: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 226
           KSLSPESAGILRALG+R A FRLNLVCRWSPG+FELYIDGP+NSD+E+A
Sbjct: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 229

[Close]

BLAST of Cp4.1LG04g00300 vs. NCBI nr
Match: gi|1009151635|ref|XP_015893654.1| (PREDICTED: mRNA turnover protein 4 homolog [Ziziphus jujuba])

HSP 1 Score: 356.3 bits (913), Expect = 3.9e-95
Identity = 174/229 (75.98%), Postives = 204/229 (89.08%), Query Frame = 1


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHK+++V+ IRQAVE+Y+SIYVF  ENMRNLKFKE RE++
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKEAIVNAIRQAVEDYSSIYVFKFENMRNLKFKEFREKM 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K     F G+NKVMQVSLGR+A++E++PG+YKVSKLL G+ GLCFTNL KEEVERLFNEY
Sbjct: 61  KSTSRFFLGSNKVMQVSLGRSAADEMRPGIYKVSKLLRGDAGLCFTNLAKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            DYD+ RTGS ATEKVELKEGPL+QFSHEMEP LRK G+PVRLNKGVVELV+D+ VCEEG
Sbjct: 121 EDYDFGRTGSIATEKVELKEGPLDQFSHEMEPFLRKQGMPVRLNKGVVELVADYVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 226
           K LSPE+A ILR LGI+MATFRL+L+CRWSP +FELYID P +SD+E++
Sbjct: 181 KPLSPEAARILRLLGIKMATFRLHLICRWSPSDFELYIDAPGDSDVESS 229

[Close]

BLAST of Cp4.1LG04g00300 vs. NCBI nr
Match: gi|596214547|ref|XP_007223904.1| (hypothetical protein PRUPE_ppa010931mg [Prunus persica])

HSP 1 Score: 352.8 bits (904), Expect = 4.3e-94
Identity = 173/229 (75.55%), Postives = 204/229 (89.08%), Query Frame = 1


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHK+++V+ IRQA E+Y+S+YVF+ ENMRNLKFKE R+QL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKETIVNSIRQAAEDYSSVYVFSFENMRNLKFKEFRDQL 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K     F G+NKVMQ+SLGR+ S+EI+P L+K+SK+LHGN GLCFTNLPKEEVERLF+EY
Sbjct: 61  KSTSRFFLGSNKVMQISLGRSDSDEIRPDLHKISKVLHGNAGLCFTNLPKEEVERLFSEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            +YD+ARTGS ATEKVEL+EGPLEQF+HEMEP LRK G+PVRLNKGVVELVSDF VC+EG
Sbjct: 121 KEYDFARTGSIATEKVELQEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFLVCDEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 226
           K LSPESA ILR LGI+MATFRL+L+ RWSPGEFELY  GPD+S +E++
Sbjct: 181 KPLSPESARILRLLGIKMATFRLHLISRWSPGEFELYGPGPDDSGVESS 229

[Close]

BLAST of Cp4.1LG04g00300 vs. NCBI nr
Match: gi|645223916|ref|XP_008218859.1| (PREDICTED: mRNA turnover protein 4 homolog [Prunus mume])

HSP 1 Score: 352.1 bits (902), Expect = 7.4e-94
Identity = 173/229 (75.55%), Postives = 203/229 (88.65%), Query Frame = 1


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR HK+++V+ IRQA E+Y+S+YVF+ ENMRNLKFKE R+QL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGRVHKETIVNSIRQAAEDYSSVYVFSFENMRNLKFKEFRDQL 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K     F G+NKVMQ+SLGR+ S+EI+P L+K+SK+LHGN GLCFTNLPKEEVERLFNEY
Sbjct: 61  KSTSRFFLGSNKVMQISLGRSDSDEIRPDLHKISKVLHGNAGLCFTNLPKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            +YD+ARTGS ATEKVEL+EGPLEQF+HEMEP LRK G+PVRLNKGVVELVSDF VC+EG
Sbjct: 121 KEYDFARTGSIATEKVELQEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFLVCDEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 226
           K LSPESA ILR LGI+MATFRL+L+ RWSPGEFELY  GPD+S +E++
Sbjct: 181 KPLSPESARILRLLGIKMATFRLHLISRWSPGEFELYGPGPDDSGVESS 229

[Close]

BLAST of Cp4.1LG04g00300 vs. NCBI nr
Match: gi|700207020|gb|KGN62139.1| (hypothetical protein Csa_2G302060 [Cucumis sativus])

HSP 1 Score: 351.3 bits (900), Expect = 1.3e-93
Identity = 175/207 (84.54%), Postives = 190/207 (91.79%), Query Frame = 1


Query: 26  MVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLK-------LFFGANKVMQVSLGRTA 85
           MV+LIRQAVENYNS++VFTVENMRNLKFKELREQLK       L   +NKVMQ+SLGR+ 
Sbjct: 1   MVELIRQAVENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLLPDFSNKVMQISLGRSD 60

Query: 86  SEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEATEKVELKEGP 145
           S+EI+PGL+KVSKLLHGNTGLCFTNLPKEEVERLFNEY DYDYARTGS A+EKVELKEGP
Sbjct: 61  SDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGP 120

Query: 146 LEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGKSLSPESAGILRALGIRMATFR 205
           L QFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEGKSLSPESAGILRALG+R A FR
Sbjct: 121 LGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLRTAIFR 180

Query: 206 LNLVCRWSPGEFELYIDGPDNSDIETA 226
           LNLVCRWSPG+FELYIDGP+NSD+E+A
Sbjct: 181 LNLVCRWSPGDFELYIDGPENSDVESA 207

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g00300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MRT4_BOVIN	2.6e-54	50.96	mRNA turnover protein 4 homolog OS=Bos taurus GN=MRTO4 PE=2 SV=1	[more]
MRT4_HUMAN	4.9e-53	50.00	mRNA turnover protein 4 homolog OS=Homo sapiens GN=MRTO4 PE=1 SV=2	[more]
MRT4_MOUSE	8.3e-53	50.48	mRNA turnover protein 4 homolog OS=Mus musculus GN=Mrto4 PE=1 SV=1	[more]
MRT4_DICDI	1.8e-39	39.07	Ribosome assembly factor mrt4 OS=Dictyostelium discoideum GN=mrt4 PE=3 SV=1	[more]
MRT4_NEUCR	2.3e-34	35.62	Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-...	[more]

BLAST of Cp4.1LG04g00300 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XU08_PRUPE	3.0e-94	75.55	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010931mg PE=3 SV=1	[more]
A0A0A0LM77_CUCSA	8.8e-94	84.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302060 PE=3 SV=1	[more]
D7T050_VITVI	1.2e-93	75.98	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g01000 PE=3 SV=...	[more]
V4T6N9_9ROSI	2.4e-91	75.88	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002376mg PE=3 SV=1	[more]
A0A151T7Y5_CAJCA	2.0e-90	73.57	mRNA turnover protein 4 isogeny OS=Cajanus cajan GN=KK1_017712 PE=3 SV=1	[more]

BLAST of Cp4.1LG04g00300 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G25260.1	4.6e-86	67.66	Ribosomal protein L10 family protein	[more]

BLAST of Cp4.1LG04g00300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778670193\|ref\|XP_011649395.1\|	6.7e-111	88.65	PREDICTED: mRNA turnover protein 4 homolog [Cucumis sativus]	[more]
gi\|1009151635\|ref\|XP_015893654.1\|	3.9e-95	75.98	PREDICTED: mRNA turnover protein 4 homolog [Ziziphus jujuba]	[more]
gi\|596214547\|ref\|XP_007223904.1\|	4.3e-94	75.55	hypothetical protein PRUPE_ppa010931mg [Prunus persica]	[more]
gi\|645223916\|ref\|XP_008218859.1\|	7.4e-94	75.55	PREDICTED: mRNA turnover protein 4 homolog [Prunus mume]	[more]
gi\|700207020\|gb\|KGN62139.1\|	1.3e-93	84.54	hypothetical protein Csa_2G302060 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0042254	ribosome biogenesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR001790	Ribosomal_L10P

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g00300.1	Cp4.1LG04g00300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 19..116 score: 1.8
None	No IPR available	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 21..212 score: 5.5
None	No IPR available	PANTHER	PTHR21141:SF37	MRNA TURNOVER PROTEIN 4 HOMOLOG	coord: 21..212 score: 5.5
None	No IPR available	unknown	SSF160369	Ribosomal protein L10-like	coord: 20..138 score: 9.02

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g00300	CmaCh11G011640	Cucurbita maxima (Rimu)	cmacpeB147
Cp4.1LG04g00300	CmoCh11G012070	Cucurbita moschata (Rifu)	cmocpeB127
Cp4.1LG04g00300	Carg26981	Silver-seed gourd	carcpeB1154

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None