CmaCh11G011640 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G011640
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRibosomal protein L10 family protein
LocationCma_Chr11 : 6748491 .. 6752365 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTCAGCCATCACTCAAAGACAGCCGCTTCCTTCGACGCCGTAAGCCCTCCCTCGCCCTCTTGTTCTTCCTCTCTCTTTCTCCCTCACGTAACTTACGCCGGGTACAGAAGTTATTTGCAGCGATCAAAGATGCCCAAGTCCAAGCGTGATAGACCAGGTCCGTTTTCATCGCTTTGCTCATATTCATGCCTAAATCGCTCTTCTTTTCGATACTAAAAAAATTTGGTATTTGTTAGGGTAGGTATTGTTTAGGTTTGAGATGATATTGATATCTCTTCACCAGTAATTGAGAGATTTCACACTTGTATCTTCGTTCTTACGGTAGTCCTACATGTTCATAGTACGTTTCCTGGTAGGCCAGATTTACGAAAGAATTTTGATTACTCAGTATTTTAGCTCCATATTTTTCTTCTAAGGTTCTTCCAAGTTCTAAAGAAGTATGCACTGTGTTACTTGAGCAAACATAGTGTGGAATTTGTGGGGATATCCTATTAGTGGGTTGGTTACAACTTGATGGCCTGTGTTTGTTAAAATTTGAGGAATAACTTGAGTATCTATTGTGTTAGTCTGAGATAGACAGGGTTGTAGACAAGCCTCAAGCACGTTTTCGCTGATTGTAGGAATGGCTGTAGTTTGCCTCAGAAGTTAGTTTGAGCTTTATAGTGTGATGGAAGAACCATAGTAGTTTAAGGTGTCTCCAAGGGGTGGCTGAGGTGAAAGGTTTCTATCTATATGCAAAATGTAGAGTTGCTTACAACACAGGGAGCTAAAGTTAAACACTGAGATCAATTTTTTAAATAGGAATAAGGAATATTTTTAGTAGGGTAATGAATGTTGTTAAAGAGAAACCAAACTGTGAATCTGGTTGAACTTAATGACTGCTTTAACATTAGAAATATGCTTAAATTTGTTATTTTAATTCGAGGTTTTTGTTAAACTATGGGCTAGTCTGTCTGAGATATGTTCTTGTCAAAAGTACTATGCAATTTAAGAATTTAAATGACATGTGGTGGTTGTATTCAGTGTCAAATATGTGTGGGTTTTTAGTTAATAGAGGAAAAATTCAACAATTCAGTCTACTGTCGACTGTTTTGACTAATTGTTTGCTGTTTGATGGGATAAATGCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTAATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTATTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAACTAAAGTCGTCTAGCAGGCAAGTTGTATTTTCTGACTTTTTTTATTGTATATTTTCTGCATCACTTCAAATATTAATTAGTGATGAGAATGTTACTTCCTATATGTTGTTTGATTTGTGTTTTGTTGGAAGAAAGGAGAAAATGAAAATATTGAATGGCATGTTTTAGAACTTGAATAAAAATGAATAGCATGTTCTAGGAGAAAAGATGAGACTATTTGGTAACAGGTTATGGTTACAGCATTGCTTTATGATCCTAAATGTAGTATCTGTTGATATGATTACAGAGCAACCTTCTGTCCTTGTTTTAACAAGCGTCAATCAAAAAGGTTTACAACCTTCATCGTCCTTCTTTCCCTTGTGCTTGATGTGGTCTCACCTGGGGCTGCAGCTTGTATACATTTGTTCTCTTTATTCTTTTTCCCTTTTTAAGTATGAATGATATGAAAATTATATTAACTCACCTTGGAATTATATTTTAGCCGTACATTATTGTATTTGGCCTCTGATCCTTGTCTATATTTTTGAAGTGTAGAAATGTATAAGCCTCTGGTCACTAATTGGGATATTTTGTTTGTGAACTTTGTTTAGTGCAATTTTTGAAATGATGCTGCAGTTGAGTGGCACTCTCTCTATTTCTCTAATGAAATGATTGTGACCTTATCTGACCTGACTGTACCTTACATGGATTCCCAAATTGATTTTCTTTTCTCTCATGGATAGATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCCGATGAGATTCAACCAGGCCTATACAAGGTTTCTAAGGTGAACCACTTTTTCCATATTGCATATAATTCAAGTGCTCTTTTTCTTTGTAGCCTTAAGGAATTAACATCCACTCTTCTATTTTTCAGCTTCTGCATGGCAATACTGGACTTTGTTTCACAAACTTACCGAAAGAAGAGGTTGAGAGGTAAACCAGACATGCTCTAGTTTTAACATTGGCAAGCACCGCCAATAGTGATAAATTGTTAGGTTGCTATTTTGTTTTACAATTTAAATGCACATATTTAAAATTTATTCACTATGCGTTCTTTTTTTTGTTTAGAAATTGAAGTATCTGATAAATTGTAGTTTCAGTTGATTTCCATATCTATGAATACAACATTCTGAAGTTTTGATTTGGGAAAGACTGTTAAAAGTGAAACAAATTGTTTTGGTGTTGGAAAGGAACCAAAAAGAAAATGTCAAATCCTTGAAGTTGAAGTTTTAAAAATTGAAACTGGTTTGTCTTCAAGGTCAAAATAAATTTTCAACTTCATAATGTCACATGCTGATTTTTCTGTGCTAAACTCGGTTGGAAGTCCTGTTTTTGTCAGTAGTAAAATTCTCTAAATGGGTTATTTACATTTCAATTTTAAAATAAGGGATTTCTGTATTTGATTTGGTATGCATTAATGCTTGATTTAATTTTCAATGTTTTGTTCTGCAGATTATTTAACGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGAAGCCACAGAAAAGGTTTCTGCCCCTTTTGAAATAAACTTATTTTTATTTTCATCATTCTAGTACTGATGTCACTTTTTGAGTGCACTGATTCAACAAAAAGGTCCAGTATCATTTCATATCGTTAGTGTTATAACATGCATGAACTTTGTGGTTGGTCGCCTTACTGAAGTTTAATGATATTAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTCAGCCATGAAATGGAGCCTTCTCTACGGAAGCTAGGATTGCCCGTTCGCTTGAACAAGGGTCGGTAAACACACTTTTTGCTTGCAAGCCCTACTTATGATAAACAAAAATTTGGTTGTAAATCATAATTGTTGAGGGAATTGCAGGTGTGGTGGAGCTTGTATCGGACTTTACTGTATGTGAGGAGGGCAAGTCTCTTTCACCAGAGTCAGCTGGCATCCTGGTTTGTATCATTTCACGACTATCTCTTTCTTTCTTTATATATATATTGAATATGAATGCCTTGTAAACGAGGTTTGAAGTAGCACTTATTGATATTGATATCGATATTTGTTTGGTTGCAGCGTGCCTTGGGGATAAGGATGGCAACTTTTCGCCTGAATTTGGTATGCAGGTGGAGTCCTGGTGAGTTTGAACTTTACATTGATGGACCAGATTATTCTGACATTGAAACTGCCTAGAAGAAGAATCCCCAACACAATATTTTCCGATTAGAATTATATATATATATATATATATATAAATGGGATGGATGGATAAATGAATGCATGGATGAATGACTCTCCCCTAGGGATTTGATGCTATAATTTGAATGGGATCGGGACTTCTCTTTTCTTCTTCTTTTGTGTAAATTATTCAAGAAATTTTGAAGGGCATGTGCCCAAATCTTCAGTTTTGTTTCTCTAGTGAGGATGAACGGATGTTACTGTGACTGGTTGGTAGATTTTGATTTGTATTATTGTCAGATCGTTGGTCTTTAAATTCTTCAAATATAGTATAGTATTATTTTATGAAATTCTGTGTGTTATAAATAAGCTTAATGTAATGAGACCGAAGAATAGATAGCGCCAGG

mRNA sequence

CATTCAGCCATCACTCAAAGACAGCCGCTTCCTTCGACGCCGTAAGCCCTCCCTCGCCCTCTTGTTCTTCCTCTCTCTTTCTCCCTCACGTAACTTACGCCGGGTACAGAAGTTATTTGCAGCGATCAAAGATGCCCAAGTCCAAGCGTGATAGACCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTAATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTATTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAACTAAAATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCCGATGAGATTCAACCAGGCCTATACAAGGTTTCTAAGCTTCTGCATGGCAATACTGGACTTTGTTTCACAAACTTACCGAAAGAAGAGGTTGAGAGATTATTTAACGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGAAGCCACAGAAAAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTCAGCCATGAAATGGAGCCTTCTCTACGGAAGCTAGGATTGCCCGTTCGCTTGAACAAGGGTGTGGTGGAGCTTGTATCGGACTTTACTGTATGTGAGGAGGGCAAGTCTCTTTCACCAGAGTCAGCTGGCATCCTGCGTGCCTTGGGGATAAGGATGGCAACTTTTCGCCTGAATTTGGTATGCAGGTGGAGTCCTGGTGAGTTTGAACTTTACATTGATGGACCAGATTATTCTGACATTGAAACTGCCTAGAAGAAGAATCCCCAACACAATATTTTCCGATTAGAATTATATATATATATATATATATATAAATGGGATGGATGGATAAATGAATGCATGGATGAATGACTCTCCCCTAGGGATTTGATGCTATAATTTGAATGGGATCGGGACTTCTCTTTTCTTCTTCTTTTGTGTAAATTATTCAAGAAATTTTGAAGGGCATGTGCCCAAATCTTCAGTTTTGTTTCTCTAGTGAGGATGAACGGATGTTACTGTGACTGGTTGGTAGATTTTGATTTGTATTATTGTCAGATCGTTGGTCTTTAAATTCTTCAAATATAGTATAGTATTATTTTATGAAATTCTGTGTGTTATAAATAAGCTTAATGTAATGAGACCGAAGAATAGATAGCGCCAGG

Coding sequence (CDS)

ATGCCCAAGTCCAAGCGTGATAGACCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTAATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTATTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAACTAAAATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCCGATGAGATTCAACCAGGCCTATACAAGGTTTCTAAGCTTCTGCATGGCAATACTGGACTTTGTTTCACAAACTTACCGAAAGAAGAGGTTGAGAGATTATTTAACGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGAAGCCACAGAAAAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTCAGCCATGAAATGGAGCCTTCTCTACGGAAGCTAGGATTGCCCGTTCGCTTGAACAAGGGTGTGGTGGAGCTTGTATCGGACTTTACTGTATGTGAGGAGGGCAAGTCTCTTTCACCAGAGTCAGCTGGCATCCTGCGTGCCTTGGGGATAAGGATGGCAACTTTTCGCCTGAATTTGGTATGCAGGTGGAGTCCTGGTGAGTTTGAACTTTACATTGATGGACCAGATTATTCTGACATTGAAACTGCCTAG

Protein sequence

MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA
Homology
[Close]
BLAST of CmaCh11G011640 vs. Swiss-Prot
Match: MRT4_BOVIN (mRNA turnover protein 4 homolog OS=Bos taurus GN=MRTO4 PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.8e-55
Identity = 107/208 (51.44%), Postives = 146/208 (70.19%), Query Frame = 1 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  K---LFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
           K   +FFG NKVM V+LGR+ SDE +  L++VSK L G  GL FTN  KEEV+  F +Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + DYAR G++AT  V L  GPLEQF H MEP LR+LGLP  L KGVV L+SD+ VC+EG 
Sbjct: 121 EMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRW 206
            L+PE A +L+  G  MA F++++   W
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVSIKYMW 208

[Close]
BLAST of CmaCh11G011640 vs. Swiss-Prot
Match: MRT4_HUMAN (mRNA turnover protein 4 homolog OS=Homo sapiens GN=MRTO4 PE=1 SV=2)

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-53
Identity = 105/208 (50.48%), Postives = 143/208 (68.75%), Query Frame = 1 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  K---LFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
           K   +FFG NKVM V+LGR+ SDE +  L++VSK L G  GL FTN  KEEV   F +Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + DYAR G++A   V L  GPLEQF H MEP LR+LGLP  L +GVV L+SD+ VC+EG 
Sbjct: 121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRW 206
            L+PE A +L+  G  MA F++ +   W
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVTIKYMW 208

[Close]
BLAST of CmaCh11G011640 vs. Swiss-Prot
Match: MRT4_MOUSE (mRNA turnover protein 4 homolog OS=Mus musculus GN=Mrto4 PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.2e-53
Identity = 106/208 (50.96%), Postives = 144/208 (69.23%), Query Frame = 1 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  K---LFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
           K   +FFG NKVM V+LGR+ SDE +  L++VSK L G  GL FTN  KEEV   F +Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + D+AR G++AT  V L  GPL+QF H MEP LR+LGLP  L KGVV L+SD+ VC+EG 
Sbjct: 121 EMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRW 206
            L+PE A IL+  G  MA F++ +   W
Sbjct: 181 VLTPEQARILKLFGYEMAEFKVIIKYMW 208

[Close]
BLAST of CmaCh11G011640 vs. Swiss-Prot
Match: MRT4_DICDI (Ribosome assembly factor mrt4 OS=Dictyostelium discoideum GN=mrt4 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.7e-40
Identity = 85/215 (39.53%), Postives = 130/215 (60.47%), Query Frame = 1 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           M KSKR+  V ++K  K   E KK +V  I+  V+ Y  IY+FT ENMRN K K +R + 
Sbjct: 1   MVKSKRNVVVNMTKVTKNPGEKKKKLVSTIKDIVDQYKFIYLFTFENMRNNKLKSVRTEW 60

Query: 61  ---KLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
              K  FG NKV+ V LG++  DE++P L+K+++ L G  GL FTN PK++V   F  Y 
Sbjct: 61  STSKFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYS 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + D+ R+G  + E + +KEGP+   +H ME  LR LGLP  L  GV+ +  ++T+CE G 
Sbjct: 121 EKDFPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAGV 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRWSPGEFEL 213
           +++PE + +L+     ++ F+ ++   W+  EF L
Sbjct: 181 AVTPEQSQLLKLFNHEISEFKFHIKGFWNEDEFTL 215

[Close]
BLAST of CmaCh11G011640 vs. Swiss-Prot
Match: MRT4_NEUCR (Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mrt4 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.0e-35
Identity = 84/233 (36.05%), Postives = 127/233 (54.51%), Query Frame = 1 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKR +   L++  KK RE K+ + + IR+ + NY   +VF+++NMRN   K++R++L
Sbjct: 1   MPKSKRAKVYNLTQVTKKNREQKEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKEL 60

Query: 61  ---KLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
              ++FFG  K+   +LG T  D    GL K+SK L G+ GL FTN    E++  F    
Sbjct: 61  NDCRIFFGKTKLTARALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKDYFVNLT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQ------------FSHEMEPSLRKLGLPVRLNKGVVE 180
             D+AR GS AT  + +  GPL               SH +EP LR+LG+P R+ KG V 
Sbjct: 121 QVDFARAGSVATRTITIPSGPLYSTGGEVPAEHDVPVSHTLEPELRRLGMPTRMVKGKVC 180

Query: 181 L------VSDFTVCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFEL 213
           L        D+ +C+EG++L      +L+   I ++ FR+ L+  WS    E+
Sbjct: 181 LGDEAGEGDDYVICKEGETLDSRQTRLLKLFSICLSEFRVKLLAYWSAASGEV 233

[Close]
BLAST of CmaCh11G011640 vs. TrEMBL
Match: M5XU08_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010931mg PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.3e-94
Identity = 174/229 (75.98%), Postives = 203/229 (88.65%), Query Frame = 1 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHK+++V+ IRQA E+Y+S+YVF+ ENMRNLKFKE R+QL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKETIVNSIRQAAEDYSSVYVFSFENMRNLKFKEFRDQL 60

Query: 61  K----LFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K     F G+NKVMQ+SLGR+ SDEI+P L+K+SK+LHGN GLCFTNLPKEEVERLF+EY
Sbjct: 61  KSTSRFFLGSNKVMQISLGRSDSDEIRPDLHKISKVLHGNAGLCFTNLPKEEVERLFSEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            +YD+ARTGS ATEKVEL+EGPLEQF+HEMEP LRK G+PVRLNKGVVELVSDF VC+EG
Sbjct: 121 KEYDFARTGSIATEKVELQEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFLVCDEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 226
           K LSPESA ILR LGI+MATFRL+L+ RWSPGEFELY  GPD S +E++
Sbjct: 181 KPLSPESARILRLLGIKMATFRLHLISRWSPGEFELYGPGPDDSGVESS 229

[Close]
BLAST of CmaCh11G011640 vs. TrEMBL
Match: D7T050_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g01000 PE=3 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 8.8e-94
Identity = 175/229 (76.42%), Postives = 202/229 (88.21%), Query Frame = 1 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR HK+S+V+ IRQAVENY+SIYVF+ ENMRNLKFKE RE+L
Sbjct: 1   MPKSKRDRPVTLSKTKKKGRGHKESIVNSIRQAVENYSSIYVFSFENMRNLKFKEFREKL 60

Query: 61  K----LFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K     F G+NKVMQ+++GR+ +DEI+PGL KVSKLLHG+TGL FTNLPKEEV+RLFNEY
Sbjct: 61  KSTSRFFLGSNKVMQIAIGRSVADEIRPGLRKVSKLLHGDTGLFFTNLPKEEVQRLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            +YD+ARTGS A EKVELKEGPL+QF+HEMEP LRK G+PVRLNKGVVELVSDF VCEEG
Sbjct: 121 EEYDFARTGSTAVEKVELKEGPLDQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 226
             LSPESA ILR LGI+MATFRL+LVCRWSP EF+LY +G D SD+E++
Sbjct: 181 TPLSPESARILRLLGIKMATFRLHLVCRWSPDEFDLYKEGLDDSDVESS 229

[Close]
BLAST of CmaCh11G011640 vs. TrEMBL
Match: A0A0A0LM77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302060 PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 2.0e-93
Identity = 175/207 (84.54%), Postives = 189/207 (91.30%), Query Frame = 1 

Query: 26  MVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLK-------LFFGANKVMQVSLGRTA 85
           MV+LIRQAVENYNS++VFTVENMRNLKFKELREQLK       L   +NKVMQ+SLGR+ 
Sbjct: 1   MVELIRQAVENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLLPDFSNKVMQISLGRSD 60

Query: 86  SDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEATEKVELKEGP 145
           SDEI+PGL+KVSKLLHGNTGLCFTNLPKEEVERLFNEY DYDYARTGS A+EKVELKEGP
Sbjct: 61  SDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGP 120

Query: 146 LEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGKSLSPESAGILRALGIRMATFR 205
           L QFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEGKSLSPESAGILRALG+R A FR
Sbjct: 121 LGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLRTAIFR 180

Query: 206 LNLVCRWSPGEFELYIDGPDYSDIETA 226
           LNLVCRWSPG+FELYIDGP+ SD+E+A
Sbjct: 181 LNLVCRWSPGDFELYIDGPENSDVESA 207

[Close]
BLAST of CmaCh11G011640 vs. TrEMBL
Match: V4T6N9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002376mg PE=3 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.1e-91
Identity = 174/228 (76.32%), Postives = 196/228 (85.96%), Query Frame = 1 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKG+EHK+ +V+ IR AVENY SIYVF+ ENMRNLKFKE REQ+
Sbjct: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60

Query: 61  K---LFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
           K    F G+NKVMQV+LGR+ SDEIQPGL KVSK L GNTGL  TN+PKEEVE LFN+Y 
Sbjct: 61  KPSRFFLGSNKVMQVALGRSVSDEIQPGLNKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           DYD+ARTGS ATEKVEL EGPLEQF+HEMEP LRK G+PVRLNKGVVELVSDF VCEEGK
Sbjct: 121 DYDFARTGSMATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 226
            LSPESA ILR LGI+MATF+L+L+CRWS  +FELY +G D SD+E+A
Sbjct: 181 PLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDESDVESA 228

[Close]
BLAST of CmaCh11G011640 vs. TrEMBL
Match: A0A151T7Y5_CAJCA (mRNA turnover protein 4 isogeny OS=Cajanus cajan GN=KK1_017712 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 9.1e-91
Identity = 168/227 (74.01%), Postives = 197/227 (86.78%), Query Frame = 1 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKR+R VTLSKTKKKGR+HK+++V+ I++A E Y  +YVF+ ENMRN KFKE REQL
Sbjct: 1   MPKSKRNRQVTLSKTKKKGRDHKETIVNGIKEAAEKYGWVYVFSFENMRNQKFKEFREQL 60

Query: 61  K----LFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K     F G+NKVMQV+LGR+A+DEI+PGL+KVSKLL G+ G+  TNLPKEEVERLF E+
Sbjct: 61  KSSSRFFLGSNKVMQVALGRSAADEIRPGLHKVSKLLRGDAGMVCTNLPKEEVERLFKEF 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            +YD+ARTGS ATEKV+LKEGPLEQF+HEMEP LRK G+PVRLNKGVVELVSDF VCEEG
Sbjct: 121 EEYDFARTGSNATEKVDLKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIE 224
           K LSPE+A ILR +GI+MATFRLNL+CRWSP EFELYIDGPD SD+E
Sbjct: 181 KPLSPEAARILRLMGIKMATFRLNLICRWSPDEFELYIDGPDESDVE 227

[Close]
BLAST of CmaCh11G011640 vs. TAIR10
Match: AT1G25260.1 (AT1G25260.1 Ribosomal protein L10 family protein)

HSP 1 Score: 317.4 bits (812), Expect = 7.1e-87
Identity = 160/235 (68.09%), Postives = 192/235 (81.70%), Query Frame = 1 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHK+ +V+ IR+AVE Y+S+YVF+ ENMRN+KFKE R+Q 
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60

Query: 61  ----KLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
               K F G+NKVMQV+LGR+A DE++ G+YKVSKLL G+TGL  T++PKEEVE LFN Y
Sbjct: 61  RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            D D++RTGS A E VELKEGPLEQF+HEMEP LRKL +PVRLNKG VELV+DF VCEEG
Sbjct: 121 EDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDG------PDYSDIETA 226
           K LSP+SA ILR L ++MATF+LNL+CRWSP +FELY +        D SD+ET+
Sbjct: 181 KQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELYREDLSELYREDLSDVETS 235

[Close]
BLAST of CmaCh11G011640 vs. NCBI nr
Match: gi|778670193|ref|XP_011649395.1| (PREDICTED: mRNA turnover protein 4 homolog [Cucumis sativus])

HSP 1 Score: 407.5 bits (1046), Expect = 1.5e-110
Identity = 203/229 (88.65%), Postives = 217/229 (94.76%), Query Frame = 1 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HKKSMV+LIRQAVENYNS++VFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60

Query: 61  K----LFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K    LFFGANKVMQ+SLGR+ SDEI+PGL+KVSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            DYDYARTGS A+EKVELKEGPL QFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEG
Sbjct: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 226
           KSLSPESAGILRALG+R A FRLNLVCRWSPG+FELYIDGP+ SD+E+A
Sbjct: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 229

[Close]
BLAST of CmaCh11G011640 vs. NCBI nr
Match: gi|1009151635|ref|XP_015893654.1| (PREDICTED: mRNA turnover protein 4 homolog [Ziziphus jujuba])

HSP 1 Score: 356.7 bits (914), Expect = 3.0e-95
Identity = 175/229 (76.42%), Postives = 203/229 (88.65%), Query Frame = 1 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHK+++V+ IRQAVE+Y+SIYVF  ENMRNLKFKE RE++
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKEAIVNAIRQAVEDYSSIYVFKFENMRNLKFKEFREKM 60

Query: 61  K----LFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K     F G+NKVMQVSLGR+A+DE++PG+YKVSKLL G+ GLCFTNL KEEVERLFNEY
Sbjct: 61  KSTSRFFLGSNKVMQVSLGRSAADEMRPGIYKVSKLLRGDAGLCFTNLAKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            DYD+ RTGS ATEKVELKEGPL+QFSHEMEP LRK G+PVRLNKGVVELV+D+ VCEEG
Sbjct: 121 EDYDFGRTGSIATEKVELKEGPLDQFSHEMEPFLRKQGMPVRLNKGVVELVADYVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 226
           K LSPE+A ILR LGI+MATFRL+L+CRWSP +FELYID P  SD+E++
Sbjct: 181 KPLSPEAARILRLLGIKMATFRLHLICRWSPSDFELYIDAPGDSDVESS 229

[Close]
BLAST of CmaCh11G011640 vs. NCBI nr
Match: gi|596214547|ref|XP_007223904.1| (hypothetical protein PRUPE_ppa010931mg [Prunus persica])

HSP 1 Score: 353.2 bits (905), Expect = 3.3e-94
Identity = 174/229 (75.98%), Postives = 203/229 (88.65%), Query Frame = 1 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHK+++V+ IRQA E+Y+S+YVF+ ENMRNLKFKE R+QL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKETIVNSIRQAAEDYSSVYVFSFENMRNLKFKEFRDQL 60

Query: 61  K----LFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K     F G+NKVMQ+SLGR+ SDEI+P L+K+SK+LHGN GLCFTNLPKEEVERLF+EY
Sbjct: 61  KSTSRFFLGSNKVMQISLGRSDSDEIRPDLHKISKVLHGNAGLCFTNLPKEEVERLFSEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            +YD+ARTGS ATEKVEL+EGPLEQF+HEMEP LRK G+PVRLNKGVVELVSDF VC+EG
Sbjct: 121 KEYDFARTGSIATEKVELQEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFLVCDEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 226
           K LSPESA ILR LGI+MATFRL+L+ RWSPGEFELY  GPD S +E++
Sbjct: 181 KPLSPESARILRLLGIKMATFRLHLISRWSPGEFELYGPGPDDSGVESS 229

[Close]
BLAST of CmaCh11G011640 vs. NCBI nr
Match: gi|645223916|ref|XP_008218859.1| (PREDICTED: mRNA turnover protein 4 homolog [Prunus mume])

HSP 1 Score: 352.4 bits (903), Expect = 5.7e-94
Identity = 174/229 (75.98%), Postives = 202/229 (88.21%), Query Frame = 1 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR HK+++V+ IRQA E+Y+S+YVF+ ENMRNLKFKE R+QL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGRVHKETIVNSIRQAAEDYSSVYVFSFENMRNLKFKEFRDQL 60

Query: 61  K----LFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K     F G+NKVMQ+SLGR+ SDEI+P L+K+SK+LHGN GLCFTNLPKEEVERLFNEY
Sbjct: 61  KSTSRFFLGSNKVMQISLGRSDSDEIRPDLHKISKVLHGNAGLCFTNLPKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            +YD+ARTGS ATEKVEL+EGPLEQF+HEMEP LRK G+PVRLNKGVVELVSDF VC+EG
Sbjct: 121 KEYDFARTGSIATEKVELQEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFLVCDEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 226
           K LSPESA ILR LGI+MATFRL+L+ RWSPGEFELY  GPD S +E++
Sbjct: 181 KPLSPESARILRLLGIKMATFRLHLISRWSPGEFELYGPGPDDSGVESS 229

[Close]
BLAST of CmaCh11G011640 vs. NCBI nr
Match: gi|225448095|ref|XP_002276595.1| (PREDICTED: mRNA turnover protein 4 homolog [Vitis vinifera])

HSP 1 Score: 351.3 bits (900), Expect = 1.3e-93
Identity = 175/229 (76.42%), Postives = 202/229 (88.21%), Query Frame = 1 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR HK+S+V+ IRQAVENY+SIYVF+ ENMRNLKFKE RE+L
Sbjct: 1   MPKSKRDRPVTLSKTKKKGRGHKESIVNSIRQAVENYSSIYVFSFENMRNLKFKEFREKL 60

Query: 61  K----LFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K     F G+NKVMQ+++GR+ +DEI+PGL KVSKLLHG+TGL FTNLPKEEV+RLFNEY
Sbjct: 61  KSTSRFFLGSNKVMQIAIGRSVADEIRPGLRKVSKLLHGDTGLFFTNLPKEEVQRLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            +YD+ARTGS A EKVELKEGPL+QF+HEMEP LRK G+PVRLNKGVVELVSDF VCEEG
Sbjct: 121 EEYDFARTGSTAVEKVELKEGPLDQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 226
             LSPESA ILR LGI+MATFRL+LVCRWSP EF+LY +G D SD+E++
Sbjct: 181 TPLSPESARILRLLGIKMATFRLHLVCRWSPDEFDLYKEGLDDSDVESS 229

The following BLAST results are available for this feature:
BLAST of CmaCh11G011640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MRT4_BOVIN6.8e-5551.44mRNA turnover protein 4 homolog OS=Bos taurus GN=MRTO4 PE=2 SV=1[more]
MRT4_HUMAN1.3e-5350.48mRNA turnover protein 4 homolog OS=Homo sapiens GN=MRTO4 PE=1 SV=2[more]
MRT4_MOUSE2.2e-5350.96mRNA turnover protein 4 homolog OS=Mus musculus GN=Mrto4 PE=1 SV=1[more]
MRT4_DICDI4.7e-4039.53Ribosome assembly factor mrt4 OS=Dictyostelium discoideum GN=mrt4 PE=3 SV=1[more]
MRT4_NEUCR6.0e-3536.05Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-... [more]
BLAST of CmaCh11G011640 vs. TrEMBL
Match NameE-valueIdentityDescription
M5XU08_PRUPE2.3e-9475.98Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010931mg PE=3 SV=1[more]
D7T050_VITVI8.8e-9476.42Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g01000 PE=3 SV=... [more]
A0A0A0LM77_CUCSA2.0e-9384.54Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302060 PE=3 SV=1[more]
V4T6N9_9ROSI1.1e-9176.32Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002376mg PE=3 SV=1[more]
A0A151T7Y5_CAJCA9.1e-9174.01mRNA turnover protein 4 isogeny OS=Cajanus cajan GN=KK1_017712 PE=3 SV=1[more]
BLAST of CmaCh11G011640 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G25260.17.1e-8768.09 Ribosomal protein L10 family protein[more]
BLAST of CmaCh11G011640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778670193|ref|XP_011649395.1|1.5e-11088.65PREDICTED: mRNA turnover protein 4 homolog [Cucumis sativus][more]
gi|1009151635|ref|XP_015893654.1|3.0e-9576.42PREDICTED: mRNA turnover protein 4 homolog [Ziziphus jujuba][more]
gi|596214547|ref|XP_007223904.1|3.3e-9475.98hypothetical protein PRUPE_ppa010931mg [Prunus persica][more]
gi|645223916|ref|XP_008218859.1|5.7e-9475.98PREDICTED: mRNA turnover protein 4 homolog [Prunus mume][more]
gi|225448095|ref|XP_002276595.1|1.3e-9376.42PREDICTED: mRNA turnover protein 4 homolog [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001790Ribosomal_L10P
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001510 RNA methylation
biological_process GO:0008150 biological_process
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G011640.1CmaCh11G011640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001790Ribosomal protein L10PPFAMPF00466Ribosomal_L10coord: 19..116
score: 1.7
NoneNo IPR availablePANTHERPTHR2114160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBERcoord: 21..212
score: 2.1
NoneNo IPR availablePANTHERPTHR21141:SF37MRNA TURNOVER PROTEIN 4 HOMOLOGcoord: 21..212
score: 2.1
NoneNo IPR availableunknownSSF160369Ribosomal protein L10-likecoord: 20..138
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh11G011640CmoCh11G012070Cucurbita moschata (Rifu)cmacmoB112
CmaCh11G011640Cp4.1LG04g00300Cucurbita pepo (Zucchini)cmacpeB147
CmaCh11G011640Carg26981Silver-seed gourdcarcmaB1143
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G011640Watermelon (Charleston Gray)cmawcgB117
CmaCh11G011640Watermelon (97103) v1cmawmB104