Cp4.1LG03g16540 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g16540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Reticulon-like protein
Location	Cp4.1LG03 : 13282355 .. 13284840 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCATTGTCATTTCTTTTCAAATTCCTTCTTCTTCTGTCTTCTAAAACCCTAGTCGCTCTCGATCGAGTTGCTTGATTTTCTCTTTGAGATTTCGGTCACTGGAATTAATCAACCATGTCGGACCATTCTGAAAACGCTGAACCGAAATCGGAGTCTTTGATCGACAAGATTGTCGAGAAGATTCACGATCACGATTCATCTTCATCGTCAGGATCAGACTCCGAAACCGAGGGATCGGCTTCGTCCTCATCCTTGAAGGAGAAGGTCTTCCGGCTTTTCGGAAGGGAGAGGCCAGTTCATCATGTATTCGGTGGTGGCAAACGTACTAAATCTTATCTATCTGATTCCAAGTTATTGATGAATCATTTCGTTTTTCGTTGGCATTTCCTTCTTTTTGAACTTTTTTTTTTTAAGATTTCTTTCCTGAGTTTATACTTGGAGCTCGTTTTTGGTTGATGCTATTTAGGTAGGCTTCTTTGCGCTGTTTAGTCATTGTTCTTATTCTTTGCTTGGATATAGAATATATGAACGGCAAGAAGTTATAGATCTGGTTGCTTTTCCTTTCTGAACAACTCTCGTAGTCAAGATCGAGCGTACGACATACTTGAGCGATTCATTGAGCTTACAGAAAATAGTCTTTTTTTTTTTAATAATTTTATTTACTGAACTTGCTATATTTGTACCACGTCCGGGTTCGATATCTGTATTTAACTTTTTTTCCTGCGTCGCTTATTTCTGGATTGCACATTTGAATTTGTTCTGATGCGATCCGCGTCTTTCTTATGTCATGTGGTGACTTTTTAATGTTAATTACAAGTTTAGTTGTTGTGTCTATTCGACTCGTCTTTTAGAACTATAAATTTAGTTTTATTATCTACTAAATGTAGGGTTGAAAGTTTGGATTTTATTGAACATAAAATTTATATTTATATTTAATAGAACAATTCATCATTAAAATTTATTTGGTAAAGATCTATTACACATAAAATTAAATGGATATCGAGATATTAAAATTTACATTAAACTTCTATATGTTTGATAAAGCGTCTAGTTTTACTTTAAACTTCTATATATTATAATTTCTTTTGATACCTTTTGAATTTAAATTGAAATGTTGACCGTTTCTTAACCCTGTGGCATAAGCAGCTGCTGATTTATTCTTGTGGAGGAATAAGAAGATCTCAGCCGGTGTTCTTAGTGGAGCCACTATCATCTGGGTTTTCTTTGAATTGCTCGAGTGCCATCTGCTTACGTTTGTTTCACGCTCTCTGATCCTCGCTCTTGGGCTCTTGTTCCTTTGGTCTAATGCCCACACATTTATTTACAAGTGAGTTATTAGATGTGAATTTCATTTTATCAATAATGAAGTGTCTGGCGGCGTGAAATCAGGCTCTTCTCCGCTGTTTAATAAGTGTATTTACAGGAGTGCACCCCGAATCCCAGTTGTTCAACTTCCTGCGGACCCCTTTCTGGAGTTTGCTTCAACTTTGAGAGCGGAAATTAATTGTGGTATTGCATTATTACGGGACATTGCAACTGGAAGAGATTTGAAGAAATTCATCACGGTATGTATATGTTATTAATGTACTTTTTTTGTGTTCTGTTATTTGTATTTACCGTGTTGGGTTCGTCTCAACTTACTGGGTCTGAACAAGTTACAGCTCTATATATACCGTGTTTACTTGAGGCGTCAGTTTCAAACAAGAAGTCTTAATACGCTATTTTGCAGTCTTAGACATCTTTAATTTTAGAATAACTGAGATTTATCTAAAATGTAGAAATAATATTTCTCTGTCTCAGGCAATTGCTGCCCTGTGGGTTCTGTCGATTGTGGGAAGCTGGTGCAATTTCTTGACGTTGTTCTACATAAGTAACGACAACTAAAACTCTATCTTCATACTTGTAGCAATCTTTTCATTTGAATCTGACATTTGACAACATTTTTTAAAACACAGACTTTGTTTTGTTGCACACCGTCCCAGTTGTGTATGAGAAGTATGAAGATAAGATCGACCCATTAGCGGAAAAAGCATTAATAGAGTTCAAGAAGCACTACGCTGTGTTTGAAGAGAAGGTTCTGAGCAAGATTCCAAAAGGGCCATTCAAAGGCAAGAAGGCTTAAACTGGCTTCGGTGTCTTCTTCCCTCACACAAAGCGGTAACCACATGTTTATTTATCTCTCTCGTTGTCTTTAGTTTTAGTTGTTCTTCAATCATTGGGGTGGTTTTCGCTATTTAGTGGGCGTGTTCTTCAGGTGTTGAATTTGTAAGTTATCAATTGTATGAAACTTTTTTGAAGAGAGTACTTTGGTTTGTGTTATTAGCTAATACACATTTTGTTCCCTTTGTTCCAATATGAGCCGTTTATTTTAACATTTAAGAACTTAATTGTAAGTTCTTACAAGTTTAGGGGAGTTTATTACATACCACATCGATCTGGTTTCGTCGTATCTTCAACTCTTTCTTTATTTTTGGAATCGAAGGG

mRNA sequence

TCCCATTGTCATTTCTTTTCAAATTCCTTCTTCTTCTGTCTTCTAAAACCCTAGTCGCTCTCGATCGAGTTGCTTGATTTTCTCTTTGAGATTTCGGTCACTGGAATTAATCAACCATGTCGGACCATTCTGAAAACGCTGAACCGAAATCGGAGTCTTTGATCGACAAGATTGTCGAGAAGATTCACGATCACGATTCATCTTCATCGTCAGGATCAGACTCCGAAACCGAGGGATCGGCTTCGTCCTCATCCTTGAAGGAGAAGGTCTTCCGGCTTTTCGGAAGGGAGAGGCCAGTTCATCATGTATTCGGTGGTGGCAAACCTGCTGATTTATTCTTGTGGAGGAATAAGAAGATCTCAGCCGGTGTTCTTAGTGGAGCCACTATCATCTGGGTTTTCTTTGAATTGCTCGAGTGCCATCTGCTTACGTTTGTTTCACGCTCTCTGATCCTCGCTCTTGGGCTCTTGTTCCTTTGGTCTAATGCCCACACATTTATTTACAAGAGTGCACCCCGAATCCCAGTTGTTCAACTTCCTGCGGACCCCTTTCTGGAGTTTGCTTCAACTTTGAGAGCGGAAATTAATTGTGGTATTGCATTATTACGGGACATTGCAACTGGAAGAGATTTGAAGAAATTCATCACGGCAATTGCTGCCCTGTGGGTTCTGTCGATTGTGGGAAGCTGGTGCAATTTCTTGACGTTGTTCTACATAAACTTTGTTTTGTTGCACACCGTCCCAGTTGTGTATGAGAAGTATGAAGATAAGATCGACCCATTAGCGGAAAAAGCATTAATAGAGTTCAAGAAGCACTACGCTGTGTTTGAAGAGAAGGTTCTGAGCAAGATTCCAAAAGGGCCATTCAAAGGCAAGAAGGCTTAAACTGGCTTCGGTGTCTTCTTCCCTCACACAAAGCGGTAACCACATGTTTATTTATCTCTCTCGTTGTCTTTAGTTTTAGTTGTTCTTCAATCATTGGGGTGGTTTTCGCTATTTAGTGGGCGTGTTCTTCAGGTGTTGAATTTGTAAGTTATCAATTGTATGAAACTTTTTTGAAGAGAGTACTTTGGTTTGTGTTATTAGCTAATACACATTTTGTTCCCTTTGTTCCAATATGAGCCGTTTATTTTAACATTTAAGAACTTAATTGTAAGTTCTTACAAGTTTAGGGGAGTTTATTACATACCACATCGATCTGGTTTCGTCGTATCTTCAACTCTTTCTTTATTTTTGGAATCGAAGGG

Coding sequence (CDS)

ATGTCGGACCATTCTGAAAACGCTGAACCGAAATCGGAGTCTTTGATCGACAAGATTGTCGAGAAGATTCACGATCACGATTCATCTTCATCGTCAGGATCAGACTCCGAAACCGAGGGATCGGCTTCGTCCTCATCCTTGAAGGAGAAGGTCTTCCGGCTTTTCGGAAGGGAGAGGCCAGTTCATCATGTATTCGGTGGTGGCAAACCTGCTGATTTATTCTTGTGGAGGAATAAGAAGATCTCAGCCGGTGTTCTTAGTGGAGCCACTATCATCTGGGTTTTCTTTGAATTGCTCGAGTGCCATCTGCTTACGTTTGTTTCACGCTCTCTGATCCTCGCTCTTGGGCTCTTGTTCCTTTGGTCTAATGCCCACACATTTATTTACAAGAGTGCACCCCGAATCCCAGTTGTTCAACTTCCTGCGGACCCCTTTCTGGAGTTTGCTTCAACTTTGAGAGCGGAAATTAATTGTGGTATTGCATTATTACGGGACATTGCAACTGGAAGAGATTTGAAGAAATTCATCACGGCAATTGCTGCCCTGTGGGTTCTGTCGATTGTGGGAAGCTGGTGCAATTTCTTGACGTTGTTCTACATAAACTTTGTTTTGTTGCACACCGTCCCAGTTGTGTATGAGAAGTATGAAGATAAGATCGACCCATTAGCGGAAAAAGCATTAATAGAGTTCAAGAAGCACTACGCTGTGTTTGAAGAGAAGGTTCTGAGCAAGATTCCAAAAGGGCCATTCAAAGGCAAGAAGGCTTAA

Protein sequence

MSDHSENAEPKSESLIDKIVEKIHDHDSSSSSGSDSETEGSASSSSLKEKVFRLFGRERPVHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFLWSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIAALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEKVLSKIPKGPFKGKKA

Homology

[Close]

BLAST of Cp4.1LG03g16540 vs. Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 7.6e-79
Identity = 157/250 (62.80%), Postives = 186/250 (74.40%), Query Frame = 1


Query: 13  ESLIDKIVEKIHDHDSSSSSGSDSETEG--------SASSSSLKEKVFRLFGRERPVHHV 72
           ESL+DKI EKIH    SSSS S S+ E         S+ SSS+K KV+RLFGRE+PVH V
Sbjct: 24  ESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKV 83

Query: 73  FGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFLWSNA 132
            GGGKPAD+F+W+NKK+S GVL GAT  WV FEL+E HLLT +   +I+ L +LFLWSNA
Sbjct: 84  LGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNA 143

Query: 133 HTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIAALWV 192
             FI KS P+IP V +P +P L+ AS LR EIN G + LR+IA+GRDLKKF+ AIA LWV
Sbjct: 144 TMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWV 203

Query: 193 LSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEKVLSK 252
           LSI+G   NFLTL YI  VLL TVP+ Y+KYEDK+DPL EKA+IE KK YAV +EKVLSK
Sbjct: 204 LSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSK 263

Query: 253 IPKGPFKGKK 255
           IP GP K KK
Sbjct: 264 IPLGPLKNKK 273

[Close]

BLAST of Cp4.1LG03g16540 vs. Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 4.9e-78
Identity = 150/253 (59.29%), Postives = 191/253 (75.49%), Query Frame = 1


Query: 1   MSDHSENAEPKSESLIDKIVEKIHDHDSSSSSGSDSETEGSASSSSLKEKVFRLFGRERP 60
           M++  E + P  ESL++KI EKIH HDSSSSS  +SE E   S S++K K++R+FGRE+P
Sbjct: 1   MAEEIEKSVPTEESLMEKISEKIHHHDSSSSS--ESEYEKPDSPSAVKAKIYRMFGREKP 60

Query: 61  VHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFL 120
           VH V GGGKPAD+FLWR+KK+S  VL  AT IWV FEL+E HLL+ +    ILALG LFL
Sbjct: 61  VHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFL 120

Query: 121 WSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIA 180
           WSNAHT I K++P+IP + +P + FL  AS+LR E+N    +LR IA GRDLKKF+  + 
Sbjct: 121 WSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVV 180

Query: 181 ALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEK 240
            LW++S+VG+W NFLTL YI FV+LHTVP++YEK+EDK+DPLAEKA+ E +K Y VF+EK
Sbjct: 181 GLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEK 240

Query: 241 VLSKIPKGPFKGK 254
           VLSKIP    K K
Sbjct: 241 VLSKIPIASLKAK 251

[Close]

BLAST of Cp4.1LG03g16540 vs. Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 4.2e-77
Identity = 156/261 (59.77%), Postives = 194/261 (74.33%), Query Frame = 1


Query: 3   DHSENAEP-----KSESLIDKIVEKIHDH-DSSSSSGSDSETEGSASSSS---LKEKVFR 62
           + S N +P     + ESL++K+ EKIH   DSSSSS SD E E  +SSSS   LK KV+R
Sbjct: 9   ESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYR 68

Query: 63  LFGRERPVHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLIL 122
           LFGRERPVH V GGGKPAD+F+W++KK+S GV  GAT+ WV FEL+E HLLT +   +I+
Sbjct: 69  LFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIV 128

Query: 123 ALGLLFLWSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLK 182
           AL +LFLWSNA  FI+KS P+IP V +P +P L+ AS LR EIN GI+ LR+IA+GRD+K
Sbjct: 129 ALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIK 188

Query: 183 KFITAIAALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKH 242
           KF++AIA LWVLSI+G   +FLTL YI  VLL TVP+ Y+KYEDK+D   EKA+ E KK 
Sbjct: 189 KFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQ 248

Query: 243 YAVFEEKVLSKIPKGPFKGKK 255
           YAV + KV SKIP+GP K KK
Sbjct: 249 YAVLDAKVFSKIPRGPLKDKK 269

[Close]

BLAST of Cp4.1LG03g16540 vs. Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.1e-76
Identity = 155/248 (62.50%), Postives = 182/248 (73.39%), Query Frame = 1


Query: 13  ESLIDKIVEKIHDH-DSSSSSGSDSETEG-SASSSSLKEKVFRLFGRERPVHHVFGGGKP 72
           ES+++KIVEKIH H DSSS S SD + +  S+SSSS K K++RLFGRE+PVH V GGGKP
Sbjct: 9   ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKP 68

Query: 73  ADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFLWSNAHTFIYK 132
           AD+FLWRNKK+S GVL   T  WV FEL E HLL F+    I AL  LFLWSNA TFI+K
Sbjct: 69  ADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHK 128

Query: 133 SAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIAALWVLSIVGS 192
           S P IP V +P DP L+  S LR EIN G+ LLR+IA+G+D+KKFI  IA LWVLSI+GS
Sbjct: 129 STPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGS 188

Query: 193 WCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEKVL----SKIP 252
             NFLTLFY   VLL T+PV+YEKYEDK+D   EKA+ E KK YAV +EKVL    SKIP
Sbjct: 189 CYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIP 248

Query: 253 KGPFKGKK 255
           +G    KK
Sbjct: 249 RGALNKKK 256

[Close]

BLAST of Cp4.1LG03g16540 vs. Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 6.0e-76
Identity = 148/253 (58.50%), Postives = 185/253 (73.12%), Query Frame = 1


Query: 1   MSDHSENAEPKSESLIDKIVEKIHDHDSSSSSGSDSETEGSASSSSLKEKVFRLFGRERP 60
           M++  E +  K ESL++KI +KIHDHDSSSSS  DSE E   S S+LK K++RLFGRE+P
Sbjct: 1   MAEELEKSMHKEESLMEKIADKIHDHDSSSSS--DSEHEKPESPSALKAKIYRLFGREKP 60

Query: 61  VHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFL 120
           VH V GGG PAD+FLWR+KK+SA VL  AT IWV FEL+E H L+ V   LI AL  LFL
Sbjct: 61  VHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFL 120

Query: 121 WSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIA 180
            SNAH F+ K+ P+IP + +  + FL   S LR E+N    +LR IA GRDLKKF+  + 
Sbjct: 121 LSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVF 180

Query: 181 ALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEK 240
            LW++S+VG+W NFLTL YI FV+LHTVP++YEK+EDK+DP+AEK L E KKHY VF+EK
Sbjct: 181 GLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEK 240

Query: 241 VLSKIPKGPFKGK 254
           VLSK+P    K K
Sbjct: 241 VLSKLPVASLKAK 251

[Close]

BLAST of Cp4.1LG03g16540 vs. TrEMBL
Match: A0A0A0L627_CUCSA (Reticulon-like protein OS=Cucumis sativus GN=Csa_3G121020 PE=4 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 1.0e-130
Identity = 240/255 (94.12%), Postives = 249/255 (97.65%), Query Frame = 1


Query: 1   MSDHSENAEPKSESLIDKIVEKIHDHDSSSSSGSDSETEGSASSSSLKEKVFRLFGRERP 60
           MSDH+E AEPKSESLIDKIVEKIHDHDSSSSSGSD+ETEGSASSS+LKEKVFR+FGRERP
Sbjct: 1   MSDHAETAEPKSESLIDKIVEKIHDHDSSSSSGSDAETEGSASSSTLKEKVFRIFGRERP 60

Query: 61  VHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFL 120
           VHHV GGGKPADLFLWRNKKISAGVLSGAT+IWVFFELLECHLLTF+SRSLILALGLLFL
Sbjct: 61  VHHVLGGGKPADLFLWRNKKISAGVLSGATLIWVFFELLECHLLTFISRSLILALGLLFL 120

Query: 121 WSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIA 180
           WSNAHTFIYKS PRIPVVQLPADPFLEFAS LRAEINCG ALLRDIATGRDLKKF+TAIA
Sbjct: 121 WSNAHTFIYKSPPRIPVVQLPADPFLEFASALRAEINCGFALLRDIATGRDLKKFLTAIA 180

Query: 181 ALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEK 240
           ALWVLSIVGSWCNFLTLFYINFVLL+TVPVVYEKYEDKIDPLAEKA+IEFKKHYAVFEEK
Sbjct: 181 ALWVLSIVGSWCNFLTLFYINFVLLYTVPVVYEKYEDKIDPLAEKAVIEFKKHYAVFEEK 240

Query: 241 VLSKIPKGPFKGKKA 256
           VLSKIPKGP KGKKA
Sbjct: 241 VLSKIPKGPLKGKKA 255

[Close]

BLAST of Cp4.1LG03g16540 vs. TrEMBL
Match: A0A0B0MVX0_GOSAR (Reticulon-like protein OS=Gossypium arboreum GN=F383_30268 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 3.4e-94
Identity = 180/254 (70.87%), Postives = 207/254 (81.50%), Query Frame = 1


Query: 1   MSDHSENAEPKSESLIDKIVEKIHDHDSSSSSGSDSETEGSASSSSLKEKVFRLFGRERP 60
           M+D SE+ +   ES+++KI EKIH +DSSSSS SDS+ E  AS SS+K K++RLFGRERP
Sbjct: 1   MADESESKQSAVESMMEKISEKIHGNDSSSSSDSDSDHEKPASPSSVKAKIYRLFGRERP 60

Query: 61  VHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFL 120
           VHHV GGGKPAD+FLWRNKKISAGVL GAT IWV FEL+E HLLT +    IL L LLFL
Sbjct: 61  VHHVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFELIEYHLLTLICHISILCLALLFL 120

Query: 121 WSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIA 180
           WSNAHTFI+KS PRIP + LP +PFL+ AS L  E+N G+ LLRDIA+GR+LK+F+  IA
Sbjct: 121 WSNAHTFIHKSPPRIPEIHLPEEPFLQVASALAIELNQGLKLLRDIASGRNLKEFLMVIA 180

Query: 181 ALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEK 240
           A WVLSIVGSWCNFLTLFYI FVLLHTVPV+YEKYEDK+DP AEKA IE KK YAVF+ K
Sbjct: 181 AFWVLSIVGSWCNFLTLFYICFVLLHTVPVLYEKYEDKVDPFAEKAAIEVKKQYAVFDAK 240

Query: 241 VLSKIPKGPFKGKK 255
           VLSKIP GP K KK
Sbjct: 241 VLSKIPMGPLKAKK 254

[Close]

BLAST of Cp4.1LG03g16540 vs. TrEMBL
Match: A0A0D2QY87_GOSRA (Reticulon-like protein OS=Gossypium raimondii GN=B456_004G154600 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 1.0e-93
Identity = 178/254 (70.08%), Postives = 206/254 (81.10%), Query Frame = 1


Query: 1   MSDHSENAEPKSESLIDKIVEKIHDHDSSSSSGSDSETEGSASSSSLKEKVFRLFGRERP 60
           M++ SE+ +   ES+++KI +KIH HDSSSSS SDS+ E  AS SS+K K++RLFGRERP
Sbjct: 1   MAEESESKQSAVESMMEKISQKIHGHDSSSSSDSDSDHEKPASPSSVKAKIYRLFGRERP 60

Query: 61  VHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFL 120
           VHHV GGGKPAD+FLWRNKKISAGVL GAT IWV FEL+E HLL  +    IL L LLFL
Sbjct: 61  VHHVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFELIEYHLLALICHISILCLALLFL 120

Query: 121 WSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIA 180
           WSNAHTFI+KS PRIP + LP +PFL+ AS L  E+N G+ LLRDIA+GR+LK+F+  IA
Sbjct: 121 WSNAHTFIHKSPPRIPEIHLPEEPFLQVASALAIELNQGLKLLRDIASGRNLKEFLMVIA 180

Query: 181 ALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEK 240
           A WVLSIVGSWCNFLTLFYI FVLLHTVPV+YEKYEDK+DP AEKA IE KK YAVF+ K
Sbjct: 181 AFWVLSIVGSWCNFLTLFYICFVLLHTVPVLYEKYEDKVDPFAEKAAIEIKKQYAVFDAK 240

Query: 241 VLSKIPKGPFKGKK 255
           VLSKIP GP K KK
Sbjct: 241 VLSKIPMGPLKAKK 254

[Close]

BLAST of Cp4.1LG03g16540 vs. TrEMBL
Match: A0A0U1VMW4_GOSHI (Reticulon-like protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.7e-93
Identity = 178/254 (70.08%), Postives = 205/254 (80.71%), Query Frame = 1


Query: 1   MSDHSENAEPKSESLIDKIVEKIHDHDSSSSSGSDSETEGSASSSSLKEKVFRLFGRERP 60
           M++ SE+ +   ES+++KI EKIH HDSSSSS SDS+ E  AS SS+K K++RLFGRERP
Sbjct: 1   MAEESESKQSAVESVMEKISEKIHGHDSSSSSDSDSDHEKPASPSSVKAKIYRLFGRERP 60

Query: 61  VHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFL 120
            HHV GGGKPAD+FLWRNKKISAGVL GAT IWV FEL+E HLL  +    IL L LLFL
Sbjct: 61  AHHVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFELIEYHLLALICHISILCLALLFL 120

Query: 121 WSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIA 180
           WSNAHTFI+KS PRIP + LP +PFL+ AS L  E+N G+ LLRDIA+GR+LK+F+  IA
Sbjct: 121 WSNAHTFIHKSPPRIPEIHLPEEPFLQVASALAIELNQGLKLLRDIASGRNLKEFLMVIA 180

Query: 181 ALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEK 240
           A WVLSIVGSWCNFLTLFYI FVLLHTVPV+YEKYEDK+DP AEKA IE KK YAVF+ K
Sbjct: 181 AFWVLSIVGSWCNFLTLFYICFVLLHTVPVLYEKYEDKVDPFAEKAAIEMKKQYAVFDAK 240

Query: 241 VLSKIPKGPFKGKK 255
           VLSKIP GP K KK
Sbjct: 241 VLSKIPMGPLKAKK 254

[Close]

BLAST of Cp4.1LG03g16540 vs. TrEMBL
Match: M5X084_PRUPE (Reticulon-like protein OS=Prunus persica GN=PRUPE_ppa008259mg PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 3.2e-92
Identity = 180/258 (69.77%), Postives = 209/258 (81.01%), Query Frame = 1


Query: 1   MSDHSENAEPKSE---SLIDKIVEKIHDHDSSSSSGSDSETEGSASSSSLKEKVFRLFGR 60
           M+D SE+A    E   SL++KI EKIHDH+SSSSS SDS+ E   S  S K KVFR+FGR
Sbjct: 83  MADQSESAGSTVEHEKSLMEKISEKIHDHNSSSSSSSDSDNEKPESPKSEKPKVFRIFGR 142

Query: 61  ERPVHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGL 120
           E+PVHHVFGGGKPAD+FLWRNKK+SAGVL GAT +WV FELLE HLLT V   LI  L +
Sbjct: 143 EKPVHHVFGGGKPADVFLWRNKKVSAGVLGGATAVWVLFELLEYHLLTLVGHILIGTLAV 202

Query: 121 LFLWSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFIT 180
           LFLWSNAH+FI+K+ PRIP V LP +PFL+ AS LR +IN   A+L DIA+GR+LKKF+ 
Sbjct: 203 LFLWSNAHSFIHKTPPRIPEVHLPEEPFLQVASELRLQINWAFAVLHDIASGRELKKFLI 262

Query: 181 AIAALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVF 240
            IA LWVLSIVG+WCNFLTLFYI+FVLLHTVPV+YEKYEDKIDP AEKA IEFKKHYAVF
Sbjct: 263 VIAGLWVLSIVGTWCNFLTLFYISFVLLHTVPVIYEKYEDKIDPFAEKATIEFKKHYAVF 322

Query: 241 EEKVLSKIPKGPFKGKKA 256
           + KVLSKIP+G  K K++
Sbjct: 323 DAKVLSKIPQG-LKNKRS 339

[Close]

BLAST of Cp4.1LG03g16540 vs. TAIR10
Match: AT4G23630.1 (AT4G23630.1 VIRB2-interacting protein 1)

HSP 1 Score: 295.0 bits (754), Expect = 4.3e-80
Identity = 157/250 (62.80%), Postives = 186/250 (74.40%), Query Frame = 1


Query: 13  ESLIDKIVEKIHDHDSSSSSGSDSETEG--------SASSSSLKEKVFRLFGRERPVHHV 72
           ESL+DKI EKIH    SSSS S S+ E         S+ SSS+K KV+RLFGRE+PVH V
Sbjct: 24  ESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKV 83

Query: 73  FGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFLWSNA 132
            GGGKPAD+F+W+NKK+S GVL GAT  WV FEL+E HLLT +   +I+ L +LFLWSNA
Sbjct: 84  LGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNA 143

Query: 133 HTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIAALWV 192
             FI KS P+IP V +P +P L+ AS LR EIN G + LR+IA+GRDLKKF+ AIA LWV
Sbjct: 144 TMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWV 203

Query: 193 LSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEKVLSK 252
           LSI+G   NFLTL YI  VLL TVP+ Y+KYEDK+DPL EKA+IE KK YAV +EKVLSK
Sbjct: 204 LSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSK 263

Query: 253 IPKGPFKGKK 255
           IP GP K KK
Sbjct: 264 IPLGPLKNKK 273

[Close]

BLAST of Cp4.1LG03g16540 vs. TAIR10
Match: AT2G46170.1 (AT2G46170.1 Reticulon family protein)

HSP 1 Score: 292.4 bits (747), Expect = 2.8e-79
Identity = 150/253 (59.29%), Postives = 191/253 (75.49%), Query Frame = 1


Query: 1   MSDHSENAEPKSESLIDKIVEKIHDHDSSSSSGSDSETEGSASSSSLKEKVFRLFGRERP 60
           M++  E + P  ESL++KI EKIH HDSSSSS  +SE E   S S++K K++R+FGRE+P
Sbjct: 1   MAEEIEKSVPTEESLMEKISEKIHHHDSSSSS--ESEYEKPDSPSAVKAKIYRMFGREKP 60

Query: 61  VHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFL 120
           VH V GGGKPAD+FLWR+KK+S  VL  AT IWV FEL+E HLL+ +    ILALG LFL
Sbjct: 61  VHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFL 120

Query: 121 WSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIA 180
           WSNAHT I K++P+IP + +P + FL  AS+LR E+N    +LR IA GRDLKKF+  + 
Sbjct: 121 WSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVV 180

Query: 181 ALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEK 240
            LW++S+VG+W NFLTL YI FV+LHTVP++YEK+EDK+DPLAEKA+ E +K Y VF+EK
Sbjct: 181 GLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEK 240

Query: 241 VLSKIPKGPFKGK 254
           VLSKIP    K K
Sbjct: 241 VLSKIPIASLKAK 251

[Close]

BLAST of Cp4.1LG03g16540 vs. TAIR10
Match: AT4G11220.1 (AT4G11220.1 VIRB2-interacting protein 2)

HSP 1 Score: 289.3 bits (739), Expect = 2.4e-78
Identity = 156/261 (59.77%), Postives = 194/261 (74.33%), Query Frame = 1


Query: 3   DHSENAEP-----KSESLIDKIVEKIHDH-DSSSSSGSDSETEGSASSSS---LKEKVFR 62
           + S N +P     + ESL++K+ EKIH   DSSSSS SD E E  +SSSS   LK KV+R
Sbjct: 9   ESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYR 68

Query: 63  LFGRERPVHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLIL 122
           LFGRERPVH V GGGKPAD+F+W++KK+S GV  GAT+ WV FEL+E HLLT +   +I+
Sbjct: 69  LFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIV 128

Query: 123 ALGLLFLWSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLK 182
           AL +LFLWSNA  FI+KS P+IP V +P +P L+ AS LR EIN GI+ LR+IA+GRD+K
Sbjct: 129 ALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIK 188

Query: 183 KFITAIAALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKH 242
           KF++AIA LWVLSI+G   +FLTL YI  VLL TVP+ Y+KYEDK+D   EKA+ E KK 
Sbjct: 189 KFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQ 248

Query: 243 YAVFEEKVLSKIPKGPFKGKK 255
           YAV + KV SKIP+GP K KK
Sbjct: 249 YAVLDAKVFSKIPRGPLKDKK 269

[Close]

BLAST of Cp4.1LG03g16540 vs. TAIR10
Match: AT5G41600.1 (AT5G41600.1 VIRB2-interacting protein 3)

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-77
Identity = 155/248 (62.50%), Postives = 182/248 (73.39%), Query Frame = 1


Query: 13  ESLIDKIVEKIHDH-DSSSSSGSDSETEG-SASSSSLKEKVFRLFGRERPVHHVFGGGKP 72
           ES+++KIVEKIH H DSSS S SD + +  S+SSSS K K++RLFGRE+PVH V GGGKP
Sbjct: 9   ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKP 68

Query: 73  ADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFLWSNAHTFIYK 132
           AD+FLWRNKK+S GVL   T  WV FEL E HLL F+    I AL  LFLWSNA TFI+K
Sbjct: 69  ADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHK 128

Query: 133 SAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIAALWVLSIVGS 192
           S P IP V +P DP L+  S LR EIN G+ LLR+IA+G+D+KKFI  IA LWVLSI+GS
Sbjct: 129 STPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGS 188

Query: 193 WCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEKVL----SKIP 252
             NFLTLFY   VLL T+PV+YEKYEDK+D   EKA+ E KK YAV +EKVL    SKIP
Sbjct: 189 CYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIP 248

Query: 253 KGPFKGKK 255
           +G    KK
Sbjct: 249 RGALNKKK 256

[Close]

BLAST of Cp4.1LG03g16540 vs. TAIR10
Match: AT1G64090.2 (AT1G64090.2 Reticulan like protein B3)

HSP 1 Score: 269.6 bits (688), Expect = 1.9e-72
Identity = 149/258 (57.75%), Postives = 180/258 (69.77%), Query Frame = 1


Query: 13  ESLIDKIVEKIHDHDSSSSSGSDSETEGSASSSSLKEKVFRLFGRERPVHHVFGGGK--- 72
           ES+++KI EKIH HD SSSS SDS+ +   +S+SLK K++RLFGRE+P+H +FGGGK   
Sbjct: 9   ESIMEKISEKIHGHDDSSSSSSDSDDD--KNSASLKTKIYRLFGREQPLHKLFGGGKHSE 68

Query: 73  -------------PADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALG 132
                         AD+FLWRNKK+S GVL  AT+ W+ FELLE +LLT      ILAL 
Sbjct: 69  NQDINERFGLVFAAADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALA 128

Query: 133 LLFLWSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFI 192
           +LFLWS+A TFI+KS   IP V +P D  L+ AS LR EIN G  +LRDIA+GRDLKKF+
Sbjct: 129 VLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFL 188

Query: 193 TAIAALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAV 251
             IA LWVLS VGS CNFLTL YI  VLL T+PV+YEKYEDK+D   EKA+ E KK Y  
Sbjct: 189 LVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVE 248

[Close]

BLAST of Cp4.1LG03g16540 vs. NCBI nr
Match: gi|449432104|ref|XP_004133840.1| (PREDICTED: reticulon-like protein B1 [Cucumis sativus])

HSP 1 Score: 474.2 bits (1219), Expect = 1.5e-130
Identity = 240/255 (94.12%), Postives = 249/255 (97.65%), Query Frame = 1


Query: 1   MSDHSENAEPKSESLIDKIVEKIHDHDSSSSSGSDSETEGSASSSSLKEKVFRLFGRERP 60
           MSDH+E AEPKSESLIDKIVEKIHDHDSSSSSGSD+ETEGSASSS+LKEKVFR+FGRERP
Sbjct: 1   MSDHAETAEPKSESLIDKIVEKIHDHDSSSSSGSDAETEGSASSSTLKEKVFRIFGRERP 60

Query: 61  VHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFL 120
           VHHV GGGKPADLFLWRNKKISAGVLSGAT+IWVFFELLECHLLTF+SRSLILALGLLFL
Sbjct: 61  VHHVLGGGKPADLFLWRNKKISAGVLSGATLIWVFFELLECHLLTFISRSLILALGLLFL 120

Query: 121 WSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIA 180
           WSNAHTFIYKS PRIPVVQLPADPFLEFAS LRAEINCG ALLRDIATGRDLKKF+TAIA
Sbjct: 121 WSNAHTFIYKSPPRIPVVQLPADPFLEFASALRAEINCGFALLRDIATGRDLKKFLTAIA 180

Query: 181 ALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEK 240
           ALWVLSIVGSWCNFLTLFYINFVLL+TVPVVYEKYEDKIDPLAEKA+IEFKKHYAVFEEK
Sbjct: 181 ALWVLSIVGSWCNFLTLFYINFVLLYTVPVVYEKYEDKIDPLAEKAVIEFKKHYAVFEEK 240

Query: 241 VLSKIPKGPFKGKKA 256
           VLSKIPKGP KGKKA
Sbjct: 241 VLSKIPKGPLKGKKA 255

[Close]

BLAST of Cp4.1LG03g16540 vs. NCBI nr
Match: gi|659075127|ref|XP_008437980.1| (PREDICTED: reticulon-like protein B5 [Cucumis melo])

HSP 1 Score: 474.2 bits (1219), Expect = 1.5e-130
Identity = 240/255 (94.12%), Postives = 249/255 (97.65%), Query Frame = 1


Query: 1   MSDHSENAEPKSESLIDKIVEKIHDHDSSSSSGSDSETEGSASSSSLKEKVFRLFGRERP 60
           MSDH+EN EPKSESLIDKIVEKIHDHDSSSSSGSD+ETEGSASSS+LKEKVFR+FGRERP
Sbjct: 1   MSDHAENTEPKSESLIDKIVEKIHDHDSSSSSGSDAETEGSASSSTLKEKVFRIFGRERP 60

Query: 61  VHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFL 120
           VHHV GGGKPADLFLWRNKKISAGVLSGAT+IWVFFELLECHLLTF+SRSLILALGLLFL
Sbjct: 61  VHHVLGGGKPADLFLWRNKKISAGVLSGATLIWVFFELLECHLLTFISRSLILALGLLFL 120

Query: 121 WSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIA 180
           WSNAHTFIYKS PRIPVVQLPADPF+EFASTLRAEINCG ALLRDIATGRDLKKF+TAIA
Sbjct: 121 WSNAHTFIYKSPPRIPVVQLPADPFMEFASTLRAEINCGFALLRDIATGRDLKKFLTAIA 180

Query: 181 ALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEK 240
           ALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKA+IEFKK YAVFEEK
Sbjct: 181 ALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKAVIEFKKLYAVFEEK 240

Query: 241 VLSKIPKGPFKGKKA 256
           VLSKIPKGP KGKKA
Sbjct: 241 VLSKIPKGPLKGKKA 255

[Close]

BLAST of Cp4.1LG03g16540 vs. NCBI nr
Match: gi|728822567|gb|KHG04885.1| (Reticulon-like protein B5 [Gossypium arboreum])

HSP 1 Score: 352.8 bits (904), Expect = 4.9e-94
Identity = 180/254 (70.87%), Postives = 207/254 (81.50%), Query Frame = 1


Query: 1   MSDHSENAEPKSESLIDKIVEKIHDHDSSSSSGSDSETEGSASSSSLKEKVFRLFGRERP 60
           M+D SE+ +   ES+++KI EKIH +DSSSSS SDS+ E  AS SS+K K++RLFGRERP
Sbjct: 1   MADESESKQSAVESMMEKISEKIHGNDSSSSSDSDSDHEKPASPSSVKAKIYRLFGRERP 60

Query: 61  VHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFL 120
           VHHV GGGKPAD+FLWRNKKISAGVL GAT IWV FEL+E HLLT +    IL L LLFL
Sbjct: 61  VHHVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFELIEYHLLTLICHISILCLALLFL 120

Query: 121 WSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIA 180
           WSNAHTFI+KS PRIP + LP +PFL+ AS L  E+N G+ LLRDIA+GR+LK+F+  IA
Sbjct: 121 WSNAHTFIHKSPPRIPEIHLPEEPFLQVASALAIELNQGLKLLRDIASGRNLKEFLMVIA 180

Query: 181 ALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEK 240
           A WVLSIVGSWCNFLTLFYI FVLLHTVPV+YEKYEDK+DP AEKA IE KK YAVF+ K
Sbjct: 181 AFWVLSIVGSWCNFLTLFYICFVLLHTVPVLYEKYEDKVDPFAEKAAIEVKKQYAVFDAK 240

Query: 241 VLSKIPKGPFKGKK 255
           VLSKIP GP K KK
Sbjct: 241 VLSKIPMGPLKAKK 254

[Close]

BLAST of Cp4.1LG03g16540 vs. NCBI nr
Match: gi|823150608|ref|XP_012475126.1| (PREDICTED: reticulon-like protein B5 [Gossypium raimondii])

HSP 1 Score: 351.3 bits (900), Expect = 1.4e-93
Identity = 178/254 (70.08%), Postives = 206/254 (81.10%), Query Frame = 1


Query: 1   MSDHSENAEPKSESLIDKIVEKIHDHDSSSSSGSDSETEGSASSSSLKEKVFRLFGRERP 60
           M++ SE+ +   ES+++KI +KIH HDSSSSS SDS+ E  AS SS+K K++RLFGRERP
Sbjct: 1   MAEESESKQSAVESMMEKISQKIHGHDSSSSSDSDSDHEKPASPSSVKAKIYRLFGRERP 60

Query: 61  VHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFL 120
           VHHV GGGKPAD+FLWRNKKISAGVL GAT IWV FEL+E HLL  +    IL L LLFL
Sbjct: 61  VHHVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFELIEYHLLALICHISILCLALLFL 120

Query: 121 WSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIA 180
           WSNAHTFI+KS PRIP + LP +PFL+ AS L  E+N G+ LLRDIA+GR+LK+F+  IA
Sbjct: 121 WSNAHTFIHKSPPRIPEIHLPEEPFLQVASALAIELNQGLKLLRDIASGRNLKEFLMVIA 180

Query: 181 ALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEK 240
           A WVLSIVGSWCNFLTLFYI FVLLHTVPV+YEKYEDK+DP AEKA IE KK YAVF+ K
Sbjct: 181 AFWVLSIVGSWCNFLTLFYICFVLLHTVPVLYEKYEDKVDPFAEKAAIEIKKQYAVFDAK 240

Query: 241 VLSKIPKGPFKGKK 255
           VLSKIP GP K KK
Sbjct: 241 VLSKIPMGPLKAKK 254

[Close]

BLAST of Cp4.1LG03g16540 vs. NCBI nr
Match: gi|414447559|gb|AFW99831.1| (reticulon-like protein [Gossypium hirsutum])

HSP 1 Score: 350.5 bits (898), Expect = 2.4e-93
Identity = 178/254 (70.08%), Postives = 205/254 (80.71%), Query Frame = 1


Query: 1   MSDHSENAEPKSESLIDKIVEKIHDHDSSSSSGSDSETEGSASSSSLKEKVFRLFGRERP 60
           M++ SE+ +   ES+++KI EKIH HDSSSSS SDS+ E  AS SS+K K++RLFGRERP
Sbjct: 1   MAEESESKQSAVESVMEKISEKIHGHDSSSSSDSDSDHEKPASPSSVKAKIYRLFGRERP 60

Query: 61  VHHVFGGGKPADLFLWRNKKISAGVLSGATIIWVFFELLECHLLTFVSRSLILALGLLFL 120
            HHV GGGKPAD+FLWRNKKISAGVL GAT IWV FEL+E HLL  +    IL L LLFL
Sbjct: 61  AHHVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFELIEYHLLALICHISILCLALLFL 120

Query: 121 WSNAHTFIYKSAPRIPVVQLPADPFLEFASTLRAEINCGIALLRDIATGRDLKKFITAIA 180
           WSNAHTFI+KS PRIP + LP +PFL+ AS L  E+N G+ LLRDIA+GR+LK+F+  IA
Sbjct: 121 WSNAHTFIHKSPPRIPEIHLPEEPFLQVASALAIELNQGLKLLRDIASGRNLKEFLMVIA 180

Query: 181 ALWVLSIVGSWCNFLTLFYINFVLLHTVPVVYEKYEDKIDPLAEKALIEFKKHYAVFEEK 240
           A WVLSIVGSWCNFLTLFYI FVLLHTVPV+YEKYEDK+DP AEKA IE KK YAVF+ K
Sbjct: 181 AFWVLSIVGSWCNFLTLFYICFVLLHTVPVLYEKYEDKVDPFAEKAAIEMKKQYAVFDAK 240

Query: 241 VLSKIPKGPFKGKK 255
           VLSKIP GP K KK
Sbjct: 241 VLSKIPMGPLKAKK 254

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g16540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RTNLA_ARATH	7.6e-79	62.80	Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1	[more]
RTNLE_ARATH	4.9e-78	59.29	Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1	[more]
RTNLB_ARATH	4.2e-77	59.77	Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1	[more]
RTNLD_ARATH	2.1e-76	62.50	Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1	[more]
RTNLF_ARATH	6.0e-76	58.50	Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1	[more]

BLAST of Cp4.1LG03g16540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L627_CUCSA	1.0e-130	94.12	Reticulon-like protein OS=Cucumis sativus GN=Csa_3G121020 PE=4 SV=1	[more]
A0A0B0MVX0_GOSAR	3.4e-94	70.87	Reticulon-like protein OS=Gossypium arboreum GN=F383_30268 PE=4 SV=1	[more]
A0A0D2QY87_GOSRA	1.0e-93	70.08	Reticulon-like protein OS=Gossypium raimondii GN=B456_004G154600 PE=4 SV=1	[more]
A0A0U1VMW4_GOSHI	1.7e-93	70.08	Reticulon-like protein OS=Gossypium hirsutum PE=2 SV=1	[more]
M5X084_PRUPE	3.2e-92	69.77	Reticulon-like protein OS=Prunus persica GN=PRUPE_ppa008259mg PE=4 SV=1	[more]

BLAST of Cp4.1LG03g16540 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23630.1	4.3e-80	62.80	VIRB2-interacting protein 1	[more]
AT2G46170.1	2.8e-79	59.29	Reticulon family protein	[more]
AT4G11220.1	2.4e-78	59.77	VIRB2-interacting protein 2	[more]
AT5G41600.1	1.2e-77	62.50	VIRB2-interacting protein 3	[more]
AT1G64090.2	1.9e-72	57.75	Reticulan like protein B3	[more]

BLAST of Cp4.1LG03g16540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432104\|ref\|XP_004133840.1\|	1.5e-130	94.12	PREDICTED: reticulon-like protein B1 [Cucumis sativus]	[more]
gi\|659075127\|ref\|XP_008437980.1\|	1.5e-130	94.12	PREDICTED: reticulon-like protein B5 [Cucumis melo]	[more]
gi\|728822567\|gb\|KHG04885.1\|	4.9e-94	70.87	Reticulon-like protein B5 [Gossypium arboreum]	[more]
gi\|823150608\|ref\|XP_012475126.1\|	1.4e-93	70.08	PREDICTED: reticulon-like protein B5 [Gossypium raimondii]	[more]
gi\|414447559\|gb\|AFW99831.1\|	2.4e-93	70.08	reticulon-like protein [Gossypium hirsutum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003388	Reticulon

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g16540.1	Cp4.1LG03g16540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 71..226 score: 1.8
IPR003388	Reticulon	PROFILE	PS50845	RETICULON	coord: 70..255 score: 44
None	No IPR available	PANTHER	PTHR10994	RETICULON	coord: 1..254 score: 5.2E
None	No IPR available	PANTHER	PTHR10994:SF70	RETICULON-LIKE PROTEIN B4	coord: 1..254 score: 5.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g16540	Cucsa.258760	Cucumber (Gy14) v1	cgycpeB0682
Cp4.1LG03g16540	Cucsa.135800	Cucumber (Gy14) v1	cgycpeB0367
Cp4.1LG03g16540	CmaCh00G003400	Cucurbita maxima (Rimu)	cmacpeB005
Cp4.1LG03g16540	CmaCh14G020720	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g16540	CmaCh06G010240	Cucurbita maxima (Rimu)	cmacpeB831
Cp4.1LG03g16540	CmoCh06G010770	Cucurbita moschata (Rifu)	cmocpeB787
Cp4.1LG03g16540	CmoCh14G021300	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g16540	Cla004212	Watermelon (97103) v1	cpewmB612
Cp4.1LG03g16540	Cla021200	Watermelon (97103) v1	cpewmB613
Cp4.1LG03g16540	Csa3G121020	Cucumber (Chinese Long) v2	cpecuB609
Cp4.1LG03g16540	MELO3C006075	Melon (DHL92) v3.5.1	cpemeB585
Cp4.1LG03g16540	MELO3C021178	Melon (DHL92) v3.5.1	cpemeB554
Cp4.1LG03g16540	ClCG05G008530	Watermelon (Charleston Gray)	cpewcgB556
Cp4.1LG03g16540	ClCG05G001190	Watermelon (Charleston Gray)	cpewcgB559
Cp4.1LG03g16540	CSPI06G00830	Wild cucumber (PI 183967)	cpecpiB632
Cp4.1LG03g16540	CSPI03G08420	Wild cucumber (PI 183967)	cpecpiB611
Cp4.1LG03g16540	Lsi05G020770	Bottle gourd (USVL1VR-Ls)	cpelsiB506
Cp4.1LG03g16540	Lsi09G015990	Bottle gourd (USVL1VR-Ls)	cpelsiB483
Cp4.1LG03g16540	MELO3C021178.2	Melon (DHL92) v3.6.1	cpemedB658
Cp4.1LG03g16540	MELO3C006075.2	Melon (DHL92) v3.6.1	cpemedB693
Cp4.1LG03g16540	CsaV3_3G008540	Cucumber (Chinese Long) v3	cpecucB0759
Cp4.1LG03g16540	CsGy3G008540	Cucumber (Gy14) v2	cgybcpeB406
Cp4.1LG03g16540	Carg20973	Silver-seed gourd	carcpeB0691
Cp4.1LG03g16540	Carg20863	Silver-seed gourd	carcpeB1379

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g16540	Cp4.1LG09g00590	Cucurbita pepo (Zucchini)	cpecpeB052
Cp4.1LG03g16540	Cp4.1LG08g01260	Cucurbita pepo (Zucchini)	cpecpeB482

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g16540	Cucurbita moschata (Rifu)	cmocpeB589
Cp4.1LG03g16540	Wild cucumber (PI 183967)	cpecpiB624
Cp4.1LG03g16540	Cucumber (Chinese Long) v2	cpecuB622
Cp4.1LG03g16540	Bottle gourd (USVL1VR-Ls)	cpelsiB486
Cp4.1LG03g16540	Watermelon (97103) v1	cpewmB616
Cp4.1LG03g16540	Cucumber (Gy14) v2	cgybcpeB678
Cp4.1LG03g16540	Melon (DHL92) v3.6.1	cpemedB651
Cp4.1LG03g16540	Cucumber (Chinese Long) v3	cpecucB0774
Cp4.1LG03g16540	Cucurbita pepo (Zucchini)	cpecpeB242
Cp4.1LG03g16540	Cucurbita pepo (Zucchini)	cpecpeB479
Cp4.1LG03g16540	Cucurbita maxima (Rimu)	cmacpeB639