Cp4.1LG03g16230 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g16230
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative
Location	Cp4.1LG03 : 13344038 .. 13344775 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGCCGCCATTGAAGCCTGTACTCCAGAAGCCTCCGGGGTATAAAGATCCAAATCTCACTGCTCCGCCAGTGCCTAGACCACCGGTGAGGAAACTGATTCTACCGTCGCCGCTAAGCCAGAATAACAAGAAGCGACGGAGCTGCTGCAGGAGATTCTGTTGCTTCCTCTGCCTTTTCGTCGTGATCCTGATCGTCGTGATTGTTGCCGCCGGTGGCTTTTTATACCTCTGGTTTGAGCCAAAACTTCCTGTGTTTCATCTCCAATCATTCCGGATCTCCAAATTCAACGTCACCGACAAAGCGGACGGATCGTATTTAAACGCCAAAACAATCGGTCGCATTGAAATCAAGAATCCTAATGAGAAGTTATCACTAAATTACCGCGATATCGAGGTCGTTACCGCCGCCGGAGAAGGTACTCGAATTGAATTAGGATCCACAATCGTGCCGAGCTTTATTCAATCGAAGGAGAACACGACGAGTTGGAAGATCGAAACAATGGTCAGCAACGAAATCGTCGACGGCGGAGCGGGGCGGAAGCTGAACTCCGGCAACAGAACCGGAGAGCTAGTGGTGATCGTCGAAGCACGTACGAAAATCGGATTCGTGGTGAATGGGCGGAGAATGCCGCGGGTGAAGATCGAAGTGGCGTGCGGTGGCGTGAGCTTGAAACGTCTCGACGGAGGCAACACGCCGAAATGCTCCATTCATTTGCCCAGATGGTTTCTGTAA

mRNA sequence

ATGGCAGAGCCGCCATTGAAGCCTGTACTCCAGAAGCCTCCGGGGTATAAAGATCCAAATCTCACTGCTCCGCCAGTGCCTAGACCACCGGTGAGGAAACTGATTCTACCGTCGCCGCTAAGCCAGAATAACAAGAAGCGACGGAGCTGCTGCAGGAGATTCTGTTGCTTCCTCTGCCTTTTCGTCGTGATCCTGATCGTCGTGATTGTTGCCGCCGGTGGCTTTTTATACCTCTGGTTTGAGCCAAAACTTCCTGTGTTTCATCTCCAATCATTCCGGATCTCCAAATTCAACGTCACCGACAAAGCGGACGGATCGTATTTAAACGCCAAAACAATCGGTCGCATTGAAATCAAGAATCCTAATGAGAAGTTATCACTAAATTACCGCGATATCGAGGTCGTTACCGCCGCCGGAGAAGGTACTCGAATTGAATTAGGATCCACAATCGTGCCGAGCTTTATTCAATCGAAGGAGAACACGACGAGTTGGAAGATCGAAACAATGGTCAGCAACGAAATCGTCGACGGCGGAGCGGGGCGGAAGCTGAACTCCGGCAACAGAACCGGAGAGCTAGTGGTGATCGTCGAAGCACGTACGAAAATCGGATTCGTGGTGAATGGGCGGAGAATGCCGCGGGTGAAGATCGAAGTGGCGTGCGGTGGCGTGAGCTTGAAACGTCTCGACGGAGGCAACACGCCGAAATGCTCCATTCATTTGCCCAGATGGTTTCTGTAA

Coding sequence (CDS)

ATGGCAGAGCCGCCATTGAAGCCTGTACTCCAGAAGCCTCCGGGGTATAAAGATCCAAATCTCACTGCTCCGCCAGTGCCTAGACCACCGGTGAGGAAACTGATTCTACCGTCGCCGCTAAGCCAGAATAACAAGAAGCGACGGAGCTGCTGCAGGAGATTCTGTTGCTTCCTCTGCCTTTTCGTCGTGATCCTGATCGTCGTGATTGTTGCCGCCGGTGGCTTTTTATACCTCTGGTTTGAGCCAAAACTTCCTGTGTTTCATCTCCAATCATTCCGGATCTCCAAATTCAACGTCACCGACAAAGCGGACGGATCGTATTTAAACGCCAAAACAATCGGTCGCATTGAAATCAAGAATCCTAATGAGAAGTTATCACTAAATTACCGCGATATCGAGGTCGTTACCGCCGCCGGAGAAGGTACTCGAATTGAATTAGGATCCACAATCGTGCCGAGCTTTATTCAATCGAAGGAGAACACGACGAGTTGGAAGATCGAAACAATGGTCAGCAACGAAATCGTCGACGGCGGAGCGGGGCGGAAGCTGAACTCCGGCAACAGAACCGGAGAGCTAGTGGTGATCGTCGAAGCACGTACGAAAATCGGATTCGTGGTGAATGGGCGGAGAATGCCGCGGGTGAAGATCGAAGTGGCGTGCGGTGGCGTGAGCTTGAAACGTCTCGACGGAGGCAACACGCCGAAATGCTCCATTCATTTGCCCAGATGGTTTCTGTAA

Protein sequence

MAEPPLKPVLQKPPGYKDPNLTAPPVPRPPVRKLILPSPLSQNNKKRRSCCRRFCCFLCLFVVILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIKNPNEKLSLNYRDIEVVTAAGEGTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDGGAGRKLNSGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACGGVSLKRLDGGNTPKCSIHLPRWFL

Homology

[Close]

BLAST of Cp4.1LG03g16230 vs. TrEMBL
Match: A0A0A0L3Z7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120370 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 2.1e-109
Identity = 208/246 (84.55%), Postives = 216/246 (87.80%), Query Frame = 1


Query: 1   MAE-PPLKPVLQKPPGYKDPNLTAPPVPRPPVRKLILPSPLSQNNKKRRSCCRRFCCFLC 60
           MAE PPLKP+LQKPPG+KDPN  A PVPRPP RKLILPSPLSQ NKKRRSC RR CCF C
Sbjct: 1   MAEPPPLKPILQKPPGFKDPNHIALPVPRPPARKLILPSPLSQKNKKRRSCWRRCCCFFC 60

Query: 61  LFVVILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIK 120
           L V+ILIV I+A GG LYLWFEPKLPV HLQSFRISKFNVTDK+DGSYLNAKTIGRIEIK
Sbjct: 61  LLVLILIVAILAVGGVLYLWFEPKLPVVHLQSFRISKFNVTDKSDGSYLNAKTIGRIEIK 120

Query: 121 NPNEKLSLNYRDIEVVTAAGEGTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDGGA 180
           NPN KLSLNY DIEV  AAGEGTR ELGS IVPSFIQS+ENTTS KIETMVSNE VD GA
Sbjct: 121 NPNSKLSLNYGDIEVQIAAGEGTRTELGSMIVPSFIQSEENTTSLKIETMVSNETVDDGA 180

Query: 181 GRKLNSGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACGGVSLKRLDGGNTPKCSIH 240
           GR LNSGNRTGELVV VEARTKIGFVV+GRRMP VKIEV+CG VSLKRLD GN PKCSIH
Sbjct: 181 GRNLNSGNRTGELVVNVEARTKIGFVVDGRRMPPVKIEVSCGSVSLKRLDRGNVPKCSIH 240

Query: 241 LPRWFL 246
           L RWFL
Sbjct: 241 LRRWFL 246

[Close]

BLAST of Cp4.1LG03g16230 vs. TrEMBL
Match: W9SAG5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003064 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.4e-65
Identity = 131/246 (53.25%), Postives = 171/246 (69.51%), Query Frame = 1


Query: 1   MAEPPLKPV-LQKPPGYKDPNLTAPPVPRPPVRKLILPSPLSQNNKKRRSCCRRFCCFLC 60
           MAE PLKP  LQKPPGY+DP     PV RPP RK +LP+      K+RR+ CR  CCF+ 
Sbjct: 1   MAEQPLKPPPLQKPPGYRDPAAPGKPVARPPQRKPVLPASFHPR-KRRRNWCRTCCCFVF 60

Query: 61  LFVVILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIK 120
           +F+++L + +  AGG  YLWFEPKLPVFHLQS RI +FNVT K DG+YL+A T+ RIE+K
Sbjct: 61  VFLLLLTLAVAIAGGIFYLWFEPKLPVFHLQSLRIPQFNVTVKPDGTYLDAGTVTRIEVK 120

Query: 121 NPNEKLSLNYRDIEVVTAAGEGTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDGGA 180
           NPN KL L Y    V  + GE    ELG   +  F Q KENTTS K+ET V N++VD G 
Sbjct: 121 NPNGKLELYYGGTHVEVSVGEDEDAELGRKDLEGFTQGKENTTSLKVETTVKNQLVDDGL 180

Query: 181 GRKLNSGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACGGVSLKRLDGGNTPKCSIH 240
           G++L SG ++ +LVV +EA+T +G++V G ++  V++ V CGGVSLK+LD G+ PKCSI 
Sbjct: 181 GKRLKSGYKSKDLVVKIEAKTSVGYIVQGVKIGTVEVGVLCGGVSLKKLDSGDMPKCSID 240

Query: 241 LPRWFL 246
           L +W +
Sbjct: 241 LLKWVI 245

[Close]

BLAST of Cp4.1LG03g16230 vs. TrEMBL
Match: A0A061DTS6_THECC (Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative OS=Theobroma cacao GN=TCM_005206 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.5e-62
Identity = 130/245 (53.06%), Postives = 169/245 (68.98%), Query Frame = 1


Query: 1   MAEPPLKPVLQKPPGYKDPNLTA-PPVPRPPVRKLILPSPLSQNNKKRRSCCRRFCCFLC 60
           M EPPLKPVLQKPPGYKDP+  A  P  RPP RK +LP P     K+R  CCR  CC  C
Sbjct: 1   MPEPPLKPVLQKPPGYKDPSAPAVKPGFRPPPRKPVLP-PSFHPKKRRGGCCRVCCCCFC 60

Query: 61  LFVVILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIK 120
           +F +ILI++++  G   YLWF+PKLP FH+QS RIS+FNVT+K DG+YL+A+T  R+E+K
Sbjct: 61  IFFLILILLLLICGAVFYLWFDPKLPGFHVQSVRISRFNVTNKPDGTYLDAQTTTRLEVK 120

Query: 121 NPNEKLSLNYRDIEVVTAAGE-GTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDGG 180
           NPN K++  Y + EV  + GE G   ELG+T V  F   K+NTTS K+ET V N++VD G
Sbjct: 121 NPNAKMTYYYGNTEVDVSVGEGGDETELGTTTVHGFTMGKQNTTSLKVETKVINKLVDDG 180

Query: 181 AGRKLNSGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACGGVSLKRLDGGNTPKCSI 240
            G +L +  R+  L V VEARTKIG  V G ++  V + V C G++LKRLDGG+ PKC I
Sbjct: 181 VGTRLQARYRSKSLRVSVEARTKIGLGVAGLKIGMVGVTVKCDGIALKRLDGGDMPKCVI 240

Query: 241 HLPRW 244
           ++ +W
Sbjct: 241 NMLKW 244

[Close]

BLAST of Cp4.1LG03g16230 vs. TrEMBL
Match: A0A0D2QQD3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105400 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.6e-56
Identity = 121/245 (49.39%), Postives = 166/245 (67.76%), Query Frame = 1


Query: 1   MAEPPLKPVLQKPPGYKDPNLTAPPVP-RPPVRKLILPSPLSQNNKKRRSCCRRFCCFLC 60
           M+EPP+KPVLQKPPGYKDPN  A     RPP RK +LP P     K++ S  R  CC  C
Sbjct: 1   MSEPPVKPVLQKPPGYKDPNSPAGQRRFRPPPRKPVLP-PSFHPKKRKTSYGRACCCCFC 60

Query: 61  LFVVILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIK 120
           +F +I +++I+  G   YLWF+P+LP FH+QSFRIS+FNVT + DG+YL+A+T  R+E+K
Sbjct: 61  IFFLIFLLLILICGAVFYLWFDPQLPGFHIQSFRISRFNVTKRPDGTYLDARTTTRLEVK 120

Query: 121 NPNEKLSLNYRDIEVVTAAGE-GTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDGG 180
           NPN K++  Y D EV  + GE G   ELG+T VP+F   ++NT S ++ET+ SN++V   
Sbjct: 121 NPNGKMTYYYGDTEVEISFGEGGYETELGTTTVPAFTMLEKNTRSLRVETIASNKLVVDE 180

Query: 181 AGRKLNSGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACGGVSLKRLDGGNTPKCSI 240
            G KL +  R+  L V VEARTK+G  V G ++  V + V C G+S K+LDGG+ PKC I
Sbjct: 181 VGNKLRARYRSKSLPVNVEARTKVGVGVAGLKIGMVGVTVKCDGMSKKQLDGGDMPKCVI 240

Query: 241 HLPRW 244
           ++ +W
Sbjct: 241 NMLKW 244

[Close]

BLAST of Cp4.1LG03g16230 vs. TrEMBL
Match: A0A0B0NJM7_GOSAR (D-alanine--poly (Phosphoribitol) ligase subunit 1 OS=Gossypium arboreum GN=F383_18367 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.7e-56
Identity = 121/245 (49.39%), Postives = 164/245 (66.94%), Query Frame = 1


Query: 1   MAEPPLKPVLQKPPGYKDPNLTAPPVP-RPPVRKLILPSPLSQNNKKRRSCCRRFCCFLC 60
           M+EPP+KPVLQKPPGYKDP+  A     RPP RK +LP P     K++ S  R  CC  C
Sbjct: 1   MSEPPVKPVLQKPPGYKDPSSPAGQRRFRPPPRKPVLP-PSFHPKKRKTSYGRACCCCFC 60

Query: 61  LFVVILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIK 120
           +F +I +++I+  G   YLWF+PKLP FH+QSFRIS+FNVT + DG+YL+A+T  R+E+K
Sbjct: 61  IFFLIFLLLILICGAVFYLWFDPKLPGFHIQSFRISRFNVTKRPDGTYLDARTTTRLEVK 120

Query: 121 NPNEKLSLNYRDIEVVTAAGE-GTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDGG 180
           NPN K+   Y D EV  + GE G   ELG+T VP+F   ++NT S ++ET  SN++V   
Sbjct: 121 NPNRKMIYYYGDTEVEVSLGEGGYETELGTTTVPAFTMLEKNTRSLRVETKASNKLVVDE 180

Query: 181 AGRKLNSGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACGGVSLKRLDGGNTPKCSI 240
            G KL +  R+  L V VEARTK+G  V G ++  V + V C G+S K+LDGG+ PKC I
Sbjct: 181 VGNKLRARYRSKSLPVNVEARTKVGVGVAGLKIGMVGVTVKCDGMSKKQLDGGDMPKCVI 240

Query: 241 HLPRW 244
           ++ +W
Sbjct: 241 NMLKW 244

[Close]

BLAST of Cp4.1LG03g16230 vs. TAIR10
Match: AT2G46300.1 (AT2G46300.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 198.4 bits (503), Expect = 5.3e-51
Identity = 102/249 (40.96%), Postives = 157/249 (63.05%), Query Frame = 1


Query: 1   MAEPPLKPVLQKPPGYKDPNLTAPPVPRPPVR----KLILPSPLSQN-NKKRRSCCRRFC 60
           MA+  + PVLQKPPGY+DPN+++PP P PP++    +  +P P S    KKRRSCCR  C
Sbjct: 1   MADYQMNPVLQKPPGYRDPNMSSPPPPPPPIQQQPMRKAVPMPTSYRPKKKRRSCCRFCC 60

Query: 61  CFLCLFVVILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGR 120
           C +C+ +V+ I +++      YLWF+PKLP F L SFR+  F + D  DG+ L+A  + R
Sbjct: 61  CCICITLVLFIFLLLVGTAVFYLWFDPKLPTFSLASFRLDGFKLADDPDGASLSATAVAR 120

Query: 121 IEIKNPNEKLSLNYRDIEVVTAAGEGT-RIELGSTIVPSFIQSKENTTSWKIETMVSNEI 180
           +E+KNPN KL   Y +  V  + G G     +G T +  F Q  +N+TS K+ET V N++
Sbjct: 121 VEMKNPNSKLVFYYGNTAVDLSVGSGNDETGMGETTMNGFRQGPKNSTSVKVETTVKNQL 180

Query: 181 VDGGAGRKLNSGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACGGVSLKRLDGGNTP 240
           V+ G  ++L +  ++ +LV+ V A+TK+G  V G ++  + + + CGGVSL +LD  ++P
Sbjct: 181 VERGLAKRLAAKFQSKDLVINVVAKTKVGLGVGGIKIGMLAVNLRCGGVSLNKLD-TDSP 240

Query: 241 KCSIHLPRW 244
           KC ++  +W
Sbjct: 241 KCILNTLKW 248

[Close]

BLAST of Cp4.1LG03g16230 vs. TAIR10
Match: AT1G01453.2 (AT1G01453.2 unknown protein)

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-36
Identity = 99/254 (38.98%), Postives = 147/254 (57.87%), Query Frame = 1


Query: 2   AEPPLKPVLQKPPGYKDPNL--TAPP--VPRPPVRKLILPSPLSQ-NNKKRRSCCRRFCC 61
           AE PL+P LQKPPG++D     +APP      P R+   P P+   + K+R S CR FCC
Sbjct: 16  AEKPLQPALQKPPGFRDQQNQPSAPPSGTATLPRRR---PRPIHPADKKRRCSFCRVFCC 75

Query: 62  FLC-LFVVILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTD-KADG--SYLNAKT 121
            +C LF VIL+++++A   F +LW+ PKLPV  L SF+IS FN +D K+D   S+L+A T
Sbjct: 76  CVCILFAVILLLILIAVAVF-FLWYSPKLPVVRLASFKISNFNFSDGKSDDGWSFLSADT 135

Query: 122 IGRIEIKNPNEKLSLNYRDIEVVTAAGE-GTRIELGSTIVPSFIQSKENTTSWKIETMVS 181
              ++ +NPN KL+  Y D +V    GE      L ST V  FI+   N T+  + T V 
Sbjct: 136 TSVLDFRNPNGKLTFYYGDTDVAVILGEKDFETNLESTKVKGFIEKPGNRTAVIVPTTVR 195

Query: 182 NEIVDGGAGRKLNSGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACGGVSLKRLDGG 241
              VD    ++L    ++ +L+V V A+TK+G  V  R++  V + + CGGV L+ LD  
Sbjct: 196 KRQVDDPTAKRLQVELKSKKLLVTVTAKTKVGLAVGSRKIVTVGVSLRCGGVILQTLD-S 255

Query: 242 NTPKCSIHLPRWFL 246
              +C+I + +W++
Sbjct: 256 KMAQCTIKMLKWYV 264

[Close]

BLAST of Cp4.1LG03g16230 vs. TAIR10
Match: AT4G01110.1 (AT4G01110.1 unknown protein)

HSP 1 Score: 142.1 bits (357), Expect = 4.5e-34
Identity = 90/257 (35.02%), Postives = 140/257 (54.47%), Query Frame = 1


Query: 3   EPPLKPVLQKPPGYKDPNLTAPPVP------------RPPVRKLILPSPLSQNNKKRRSC 62
           E  LKPVLQKPPGY++ + + P  P            RPP  K  +P+      K++ S 
Sbjct: 4   ETLLKPVLQKPPGYRELH-SQPQTPLGSSSSSSSMLRRPP--KHAIPAAFYPTKKRQWSR 63

Query: 63  CRRFCCFLCLFVVILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADG---SY 122
           CR FCC +C+ V I+I++++      +L++ P+LPV  L SFR+S FN +    G   S 
Sbjct: 64  CRVFCCCVCITVAIVILLLILTVSVFFLYYSPRLPVVRLSSFRVSNFNFSGGKAGDGLSQ 123

Query: 123 LNAKTIGRIEIKNPNEKLSLNYRDIEVVTAAGEGT-RIELGSTIVPSFIQSKENTTSWKI 182
           L A+   R++ +NPN KL   Y +++V  + GE      LGST V  F++   N T   +
Sbjct: 124 LTAEATARLDFRNPNGKLRYYYGNVDVAVSVGEDDFETSLGSTKVKGFVEKPGNRTVVIV 183

Query: 183 ETMVSNEIVDGGAGRKLNSGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACGGVSLK 242
              V  + VD    ++L +  ++ +LVV V A+TK+G  V  R++  V + ++CGGV L+
Sbjct: 184 PIKVKKQQVDDPTVKRLRADMKSKKLVVKVMAKTKVGLGVGRRKIVTVGVTISCGGVRLQ 243

Query: 243 RLDGGNTPKCSIHLPRW 244
            LD     KC+I + +W
Sbjct: 244 TLD-SKMSKCTIKMLKW 256

[Close]

BLAST of Cp4.1LG03g16230 vs. TAIR10
Match: AT1G65690.1 (AT1G65690.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 75.9 bits (185), Expect = 3.9e-14
Identity = 64/217 (29.49%), Postives = 100/217 (46.08%), Query Frame = 1


Query: 5   PLKPVLQKPPGYKDPNLTAPPVPRPPVRKLILPSPLSQNNKKRRSCCRRFCCFLCLFVVI 64
           PL P       + DP+    P+ + P R + L  P     KKRRSCC R  C+   F+++
Sbjct: 23  PLVPRGSSRSEHGDPSKV--PLNQRPQRFVPLAPP-----KKRRSCCCRCFCYTFCFLLL 82

Query: 65  LIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIKNPNEK 124
           L+V + A+ G LYL F+PKLP + +   ++++F +    D S   A  +  I  KNPNEK
Sbjct: 83  LVVAVGASIGILYLVFKPKLPDYSIDRLQLTRFALNQ--DSSLTTAFNV-TITAKNPNEK 142

Query: 125 LSLNYRDIEVVTAAGEGTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDGGAGRKLN 184
           + + Y D   +T      ++  GS  +P F Q  ENTT   +E     +   G       
Sbjct: 143 IGIYYEDGSKITVWYMEHQLSNGS--LPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEE 202

Query: 185 SGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACG 222
              RTG + + +     +       ++  V+  V CG
Sbjct: 203 QQQRTGNIPLRIRVNQPVRVKFGKLKLFEVRFLVRCG 227

[Close]

BLAST of Cp4.1LG03g16230 vs. TAIR10
Match: AT5G36970.1 (AT5G36970.1 NDR1/HIN1-like 25)

HSP 1 Score: 71.6 bits (174), Expect = 7.4e-13
Identity = 62/212 (29.25%), Postives = 96/212 (45.28%), Query Frame = 1


Query: 19  PNLTAPPVPRPPVR-------KLILPSPLSQNNKKR--RSCCRRFCCFLCLFVVILIVVI 78
           P+ TAP VPR   R       K    +PL    +K+  RSC  R  C+  L + +LIV++
Sbjct: 17  PHPTAPLVPRGSSRSEHGDPTKTQQAAPLDPPREKKGSRSCWCRCVCYTLLVLFLLIVIV 76

Query: 79  VAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIKNPNEKLSLNY 138
            A  G LYL F PK P +++   ++++F +    D S   A  +  I  KNPNEK+ + Y
Sbjct: 77  GAIVGILYLVFRPKFPDYNIDRLQLTRFQLNQ--DLSLSTAFNV-TITAKNPNEKIGIYY 136

Query: 139 RDIEVVTAAGEGTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDGGAGRKLNSGNRT 198
            D   ++     TRI  GS  +P F Q  ENTT   +E     +               T
Sbjct: 137 EDGSKISVLYMQTRISNGS--LPKFYQGHENTTIILVEMTGFTQNATSLMTTLQEQQRLT 196

Query: 199 GELVVIVEARTKIGFVVNGRRMPRVKIEVACG 222
           G + + +     +   +   ++ +V+  V CG
Sbjct: 197 GSIPLRIRVTQPVRIKLGKLKLMKVRFLVRCG 223

[Close]

BLAST of Cp4.1LG03g16230 vs. NCBI nr
Match: gi|659075079|ref|XP_008437954.1| (PREDICTED: protein YLS9-like isoform X1 [Cucumis melo])

HSP 1 Score: 403.7 bits (1036), Expect = 2.3e-109
Identity = 209/246 (84.96%), Postives = 216/246 (87.80%), Query Frame = 1


Query: 1   MAEP-PLKPVLQKPPGYKDPNLTAPPVPRPPVRKLILPSPLSQNNKKRRSCCRRFCCFLC 60
           MAEP PLKP+LQKPPG+KDPN TA PVPRPP RKLILPSPLSQ NKKRRSC RR CCF C
Sbjct: 69  MAEPTPLKPILQKPPGFKDPNHTALPVPRPPARKLILPSPLSQKNKKRRSCWRRCCCFFC 128

Query: 61  LFVVILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIK 120
           LFV+ILIVVI+A GG LYLWFE KLPV HLQSFRISKFNVTDK+DGSYLNAKTIGRIEIK
Sbjct: 129 LFVLILIVVILAVGGVLYLWFERKLPVVHLQSFRISKFNVTDKSDGSYLNAKTIGRIEIK 188

Query: 121 NPNEKLSLNYRDIEVVTAAGEGTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDGGA 180
           NPN KLSLNY DIEV  AAGEGTR ELGS IVPSFIQS+ENTTS KIETMV+NE VD GA
Sbjct: 189 NPNSKLSLNYGDIEVQVAAGEGTRTELGSMIVPSFIQSEENTTSLKIETMVNNETVDDGA 248

Query: 181 GRKLNSGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACGGVSLKRLDGGNTPKCSIH 240
           GR LNSGNRTGELVV VEARTKIGFVV GRRMP VKIEV CG VSLKRLD GN PKCSIH
Sbjct: 249 GRYLNSGNRTGELVVNVEARTKIGFVVEGRRMPPVKIEVTCGSVSLKRLDRGNVPKCSIH 308

Query: 241 LPRWFL 246
           L RWFL
Sbjct: 309 LRRWFL 314

[Close]

BLAST of Cp4.1LG03g16230 vs. NCBI nr
Match: gi|659075081|ref|XP_008437955.1| (PREDICTED: protein YLS9-like isoform X2 [Cucumis melo])

HSP 1 Score: 403.7 bits (1036), Expect = 2.3e-109
Identity = 209/246 (84.96%), Postives = 216/246 (87.80%), Query Frame = 1


Query: 1   MAEP-PLKPVLQKPPGYKDPNLTAPPVPRPPVRKLILPSPLSQNNKKRRSCCRRFCCFLC 60
           MAEP PLKP+LQKPPG+KDPN TA PVPRPP RKLILPSPLSQ NKKRRSC RR CCF C
Sbjct: 1   MAEPTPLKPILQKPPGFKDPNHTALPVPRPPARKLILPSPLSQKNKKRRSCWRRCCCFFC 60

Query: 61  LFVVILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIK 120
           LFV+ILIVVI+A GG LYLWFE KLPV HLQSFRISKFNVTDK+DGSYLNAKTIGRIEIK
Sbjct: 61  LFVLILIVVILAVGGVLYLWFERKLPVVHLQSFRISKFNVTDKSDGSYLNAKTIGRIEIK 120

Query: 121 NPNEKLSLNYRDIEVVTAAGEGTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDGGA 180
           NPN KLSLNY DIEV  AAGEGTR ELGS IVPSFIQS+ENTTS KIETMV+NE VD GA
Sbjct: 121 NPNSKLSLNYGDIEVQVAAGEGTRTELGSMIVPSFIQSEENTTSLKIETMVNNETVDDGA 180

Query: 181 GRKLNSGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACGGVSLKRLDGGNTPKCSIH 240
           GR LNSGNRTGELVV VEARTKIGFVV GRRMP VKIEV CG VSLKRLD GN PKCSIH
Sbjct: 181 GRYLNSGNRTGELVVNVEARTKIGFVVEGRRMPPVKIEVTCGSVSLKRLDRGNVPKCSIH 240

Query: 241 LPRWFL 246
           L RWFL
Sbjct: 241 LRRWFL 246

[Close]

BLAST of Cp4.1LG03g16230 vs. NCBI nr
Match: gi|778677027|ref|XP_011650715.1| (PREDICTED: uncharacterized protein LOC101214208 [Cucumis sativus])

HSP 1 Score: 403.3 bits (1035), Expect = 3.1e-109
Identity = 208/246 (84.55%), Postives = 216/246 (87.80%), Query Frame = 1


Query: 1   MAE-PPLKPVLQKPPGYKDPNLTAPPVPRPPVRKLILPSPLSQNNKKRRSCCRRFCCFLC 60
           MAE PPLKP+LQKPPG+KDPN  A PVPRPP RKLILPSPLSQ NKKRRSC RR CCF C
Sbjct: 1   MAEPPPLKPILQKPPGFKDPNHIALPVPRPPARKLILPSPLSQKNKKRRSCWRRCCCFFC 60

Query: 61  LFVVILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIK 120
           L V+ILIV I+A GG LYLWFEPKLPV HLQSFRISKFNVTDK+DGSYLNAKTIGRIEIK
Sbjct: 61  LLVLILIVAILAVGGVLYLWFEPKLPVVHLQSFRISKFNVTDKSDGSYLNAKTIGRIEIK 120

Query: 121 NPNEKLSLNYRDIEVVTAAGEGTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDGGA 180
           NPN KLSLNY DIEV  AAGEGTR ELGS IVPSFIQS+ENTTS KIETMVSNE VD GA
Sbjct: 121 NPNSKLSLNYGDIEVQIAAGEGTRTELGSMIVPSFIQSEENTTSLKIETMVSNETVDDGA 180

Query: 181 GRKLNSGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACGGVSLKRLDGGNTPKCSIH 240
           GR LNSGNRTGELVV VEARTKIGFVV+GRRMP VKIEV+CG VSLKRLD GN PKCSIH
Sbjct: 181 GRNLNSGNRTGELVVNVEARTKIGFVVDGRRMPPVKIEVSCGSVSLKRLDRGNVPKCSIH 240

Query: 241 LPRWFL 246
           L RWFL
Sbjct: 241 LRRWFL 246

[Close]

BLAST of Cp4.1LG03g16230 vs. NCBI nr
Match: gi|702333839|ref|XP_010055051.1| (PREDICTED: protein YLS9-like [Eucalyptus grandis])

HSP 1 Score: 258.1 bits (658), Expect = 1.6e-65
Identity = 125/243 (51.44%), Postives = 169/243 (69.55%), Query Frame = 1


Query: 1   MAEPPLKPVLQKPPGYKDPNLTAPPVPRPPVRKLILPSPLSQNNKKRRSCCRRFCCFLCL 60
           MAEPP KP+LQKPPGY+DP++     P  P RK ++P P     KKRRSCCR  CC LC+
Sbjct: 1   MAEPPQKPMLQKPPGYRDPSVVVQQPPTQPYRKPVMP-PSMYPRKKRRSCCRSCCCCLCV 60

Query: 61  FVVILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIKN 120
            + +++ V++ AG   YLWF PK+PVFHLQSFRI +FNVT K DG+YL A+T+ R+E+KN
Sbjct: 61  LIFLILCVLILAGALSYLWFGPKIPVFHLQSFRIPRFNVTAKPDGTYLKAQTVLRVEVKN 120

Query: 121 PNEKLSLNYRDIEVVTAAGEGTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDGGAG 180
           PN+KL L Y   +V  + G G  IELGS  +P F Q K+N TS K+ T V +E+V+ GAG
Sbjct: 121 PNQKLGLYYGGTDVDISLGRGGGIELGSDSLPGFTQGKKNVTSLKVTTEVRDELVEDGAG 180

Query: 181 RKLNSGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACGGVSLKRLDGGNTPKCSIHL 240
            +L SG R+  LVV V+ RT +G ++ G ++ RV++ V CG V++K ++GG  PKC I+L
Sbjct: 181 AELRSGYRSKSLVVKVKVRTSVGAIIQGWKVGRVRVNVECGEVAMKEVEGGEMPKCKINL 240

Query: 241 PRW 244
            RW
Sbjct: 241 LRW 242

[Close]

BLAST of Cp4.1LG03g16230 vs. NCBI nr
Match: gi|703148826|ref|XP_010109444.1| (hypothetical protein L484_003064 [Morus notabilis])

HSP 1 Score: 257.7 bits (657), Expect = 2.1e-65
Identity = 131/246 (53.25%), Postives = 171/246 (69.51%), Query Frame = 1


Query: 1   MAEPPLKPV-LQKPPGYKDPNLTAPPVPRPPVRKLILPSPLSQNNKKRRSCCRRFCCFLC 60
           MAE PLKP  LQKPPGY+DP     PV RPP RK +LP+      K+RR+ CR  CCF+ 
Sbjct: 1   MAEQPLKPPPLQKPPGYRDPAAPGKPVARPPQRKPVLPASFHPR-KRRRNWCRTCCCFVF 60

Query: 61  LFVVILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIK 120
           +F+++L + +  AGG  YLWFEPKLPVFHLQS RI +FNVT K DG+YL+A T+ RIE+K
Sbjct: 61  VFLLLLTLAVAIAGGIFYLWFEPKLPVFHLQSLRIPQFNVTVKPDGTYLDAGTVTRIEVK 120

Query: 121 NPNEKLSLNYRDIEVVTAAGEGTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDGGA 180
           NPN KL L Y    V  + GE    ELG   +  F Q KENTTS K+ET V N++VD G 
Sbjct: 121 NPNGKLELYYGGTHVEVSVGEDEDAELGRKDLEGFTQGKENTTSLKVETTVKNQLVDDGL 180

Query: 181 GRKLNSGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACGGVSLKRLDGGNTPKCSIH 240
           G++L SG ++ +LVV +EA+T +G++V G ++  V++ V CGGVSLK+LD G+ PKCSI 
Sbjct: 181 GKRLKSGYKSKDLVVKIEAKTSVGYIVQGVKIGTVEVGVLCGGVSLKKLDSGDMPKCSID 240

Query: 241 LPRWFL 246
           L +W +
Sbjct: 241 LLKWVI 245

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g16230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g16230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3Z7_CUCSA	2.1e-109	84.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120370 PE=4 SV=1	[more]
W9SAG5_9ROSA	1.4e-65	53.25	Uncharacterized protein OS=Morus notabilis GN=L484_003064 PE=4 SV=1	[more]
A0A061DTS6_THECC	1.5e-62	53.06	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative OS...	[more]
A0A0D2QQD3_GOSRA	1.6e-56	49.39	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105400 PE=4 SV=1	[more]
A0A0B0NJM7_GOSAR	2.7e-56	49.39	D-alanine--poly (Phosphoribitol) ligase subunit 1 OS=Gossypium arboreum GN=F383_...	[more]

BLAST of Cp4.1LG03g16230 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46300.1	5.3e-51	40.96	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G01453.2	2.1e-36	38.98	unknown protein	[more]
AT4G01110.1	4.5e-34	35.02	unknown protein	[more]
AT1G65690.1	3.9e-14	29.49	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G36970.1	7.4e-13	29.25	NDR1/HIN1-like 25	[more]

BLAST of Cp4.1LG03g16230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075079\|ref\|XP_008437954.1\|	2.3e-109	84.96	PREDICTED: protein YLS9-like isoform X1 [Cucumis melo]	[more]
gi\|659075081\|ref\|XP_008437955.1\|	2.3e-109	84.96	PREDICTED: protein YLS9-like isoform X2 [Cucumis melo]	[more]
gi\|778677027\|ref\|XP_011650715.1\|	3.1e-109	84.55	PREDICTED: uncharacterized protein LOC101214208 [Cucumis sativus]	[more]
gi\|702333839\|ref\|XP_010055051.1\|	1.6e-65	51.44	PREDICTED: protein YLS9-like [Eucalyptus grandis]	[more]
gi\|703148826\|ref\|XP_010109444.1\|	2.1e-65	53.25	hypothetical protein L484_003064 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g16230.1	Cp4.1LG03g16230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 116..212 score: 8.
None	No IPR available	PANTHER	PTHR31234	FAMILY NOT NAMED	coord: 1..244 score: 4.9
None	No IPR available	PANTHER	PTHR31234:SF12	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 1..244 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g16230	Cucsa.258920	Cucumber (Gy14) v1	cgycpeB0682
Cp4.1LG03g16230	CmaCh06G010340	Cucurbita maxima (Rimu)	cmacpeB831
Cp4.1LG03g16230	CmoCh14G021460	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g16230	Cla021187	Watermelon (97103) v1	cpewmB613
Cp4.1LG03g16230	Csa3G120370	Cucumber (Chinese Long) v2	cpecuB609
Cp4.1LG03g16230	MELO3C006056	Melon (DHL92) v3.5.1	cpemeB585
Cp4.1LG03g16230	CSPI03G08250	Wild cucumber (PI 183967)	cpecpiB611
Cp4.1LG03g16230	MELO3C006056.2	Melon (DHL92) v3.6.1	cpemedB693
Cp4.1LG03g16230	CsaV3_3G008390	Cucumber (Chinese Long) v3	cpecucB0759
Cp4.1LG03g16230	Bhi01G000314	Wax gourd	cpewgoB0770
Cp4.1LG03g16230	CsGy3G008380	Cucumber (Gy14) v2	cgybcpeB406
Cp4.1LG03g16230	Carg20872	Silver-seed gourd	carcpeB1379
Cp4.1LG03g16230	Carg20960	Silver-seed gourd	carcpeB0691

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g16230	Cp4.1LG08g01150	Cucurbita pepo (Zucchini)	cpecpeB482

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g16230	Wax gourd	cpewgoB0761
Cp4.1LG03g16230	Cucurbita pepo (Zucchini)	cpecpeB052
Cp4.1LG03g16230	Cucurbita pepo (Zucchini)	cpecpeB217
Cp4.1LG03g16230	Cucurbita pepo (Zucchini)	cpecpeB242
Cp4.1LG03g16230	Cucurbita pepo (Zucchini)	cpecpeB479
Cp4.1LG03g16230	Cucumber (Gy14) v1	cgycpeB0367
Cp4.1LG03g16230	Cucumber (Gy14) v1	cgycpeB0574
Cp4.1LG03g16230	Cucurbita maxima (Rimu)	cmacpeB005
Cp4.1LG03g16230	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g16230	Cucurbita maxima (Rimu)	cmacpeB639
Cp4.1LG03g16230	Cucurbita moschata (Rifu)	cmocpeB589
Cp4.1LG03g16230	Cucurbita moschata (Rifu)	cmocpeB787
Cp4.1LG03g16230	Wild cucumber (PI 183967)	cpecpiB624
Cp4.1LG03g16230	Wild cucumber (PI 183967)	cpecpiB632
Cp4.1LG03g16230	Cucumber (Chinese Long) v2	cpecuB622
Cp4.1LG03g16230	Bottle gourd (USVL1VR-Ls)	cpelsiB483
Cp4.1LG03g16230	Bottle gourd (USVL1VR-Ls)	cpelsiB486
Cp4.1LG03g16230	Bottle gourd (USVL1VR-Ls)	cpelsiB506
Cp4.1LG03g16230	Watermelon (Charleston Gray)	cpewcgB556
Cp4.1LG03g16230	Watermelon (Charleston Gray)	cpewcgB559
Cp4.1LG03g16230	Watermelon (97103) v1	cpewmB616
Cp4.1LG03g16230	Watermelon (97103) v1	cpewmB612
Cp4.1LG03g16230	Melon (DHL92) v3.5.1	cpemeB554
Cp4.1LG03g16230	Cucumber (Gy14) v2	cgybcpeB678
Cp4.1LG03g16230	Melon (DHL92) v3.6.1	cpemedB651
Cp4.1LG03g16230	Melon (DHL92) v3.6.1	cpemedB658
Cp4.1LG03g16230	Cucumber (Chinese Long) v3	cpecucB0774