Cp4.1LG03g15140 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g15140
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRibosomal-like protein, putative
LocationCp4.1LG03 : 8148300 .. 8148755 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATTCAAATTCACCGGCGACCCAAAATTCCCTCCACCAAGACAACAATACTGCAACTCCCATGGCGTCTTCAGGAGGAGCCCAAAGAAGAAAGCTTCCTTCCCCACAGGAACTCGTATCCCACTACGAATCCCAAGGCCTCACTTCTCACGATGCTTCAATCAAGGTGATCGAAGACCTTCAAAATGCTCTTGTAAGGATCATCTCCTCCGGCAGAGGCAAGAAGGACAAGCTCCTGGTGGATACCTCAAGGAAGATCGACGCCACTAATACCCGTCTTGCCATTCTCGACCTAAAGTTGGACTCCAAGCCCGGCTATGCCCAGACTTTTGCCCTAGGCTTGGCTTCTGGATCTGTTTTGAATGGAATTGGCGCCGTGATGCCCCATGTTTTTGGGGCTCTCGCCAATATTTGGAGCTCTGTTAGTAAATTCACTAAGCATTCTTCTTGA

mRNA sequence

ATGGCGGATTCAAATTCACCGGCGACCCAAAATTCCCTCCACCAAGACAACAATACTGCAACTCCCATGGCGTCTTCAGGAGGAGCCCAAAGAAGAAAGCTTCCTTCCCCACAGGAACTCGTATCCCACTACGAATCCCAAGGCCTCACTTCTCACGATGCTTCAATCAAGGTGATCGAAGACCTTCAAAATGCTCTTGTAAGGATCATCTCCTCCGGCAGAGGCAAGAAGGACAAGCTCCTGGTGGATACCTCAAGGAAGATCGACGCCACTAATACCCGTCTTGCCATTCTCGACCTAAAGTTGGACTCCAAGCCCGGCTATGCCCAGACTTTTGCCCTAGGCTTGGCTTCTGGATCTGTTTTGAATGGAATTGGCGCCGTGATGCCCCATGTTTTTGGGGCTCTCGCCAATATTTGGAGCTCTGTTAGTAAATTCACTAAGCATTCTTCTTGA

Coding sequence (CDS)

ATGGCGGATTCAAATTCACCGGCGACCCAAAATTCCCTCCACCAAGACAACAATACTGCAACTCCCATGGCGTCTTCAGGAGGAGCCCAAAGAAGAAAGCTTCCTTCCCCACAGGAACTCGTATCCCACTACGAATCCCAAGGCCTCACTTCTCACGATGCTTCAATCAAGGTGATCGAAGACCTTCAAAATGCTCTTGTAAGGATCATCTCCTCCGGCAGAGGCAAGAAGGACAAGCTCCTGGTGGATACCTCAAGGAAGATCGACGCCACTAATACCCGTCTTGCCATTCTCGACCTAAAGTTGGACTCCAAGCCCGGCTATGCCCAGACTTTTGCCCTAGGCTTGGCTTCTGGATCTGTTTTGAATGGAATTGGCGCCGTGATGCCCCATGTTTTTGGGGCTCTCGCCAATATTTGGAGCTCTGTTAGTAAATTCACTAAGCATTCTTCTTGA

Protein sequence

MADSNSPATQNSLHQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAVMPHVFGALANIWSSVSKFTKHSS
Homology
[Close]
BLAST of Cp4.1LG03g15140 vs. TrEMBL
Match: A0A0A0L3B6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G385280 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.7e-51
Identity = 111/150 (74.00%), Postives = 124/150 (82.67%), Query Frame = 1 

Query: 1   MADSNSPATQNSLHQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
           M DS SPA+ NSL +  +  +P   S     RK PSPQEL+SHYESQGLTSHDASIKVI+
Sbjct: 1   MEDSGSPASPNSLPKGQDNISPTVRSV----RKPPSPQELISHYESQGLTSHDASIKVID 60

Query: 61  DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
           DLQNAL RIISSGRG KDK L++TSRK+DATN+RLA+LDLKLDSKPGYA+TFALGLASGS
Sbjct: 61  DLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALGLASGS 120

Query: 121 VLNGIGAVMPHVFGALANIWSSVSKFTKHS 151
           VLNG G VMPHVF AL NIWSSV+  TKHS
Sbjct: 121 VLNGFGTVMPHVFRALTNIWSSVTNLTKHS 146

[Close]
BLAST of Cp4.1LG03g15140 vs. TrEMBL
Match: W9SDG9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001366 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-40
Identity = 88/132 (66.67%), Postives = 107/132 (81.06%), Query Frame = 1 

Query: 19  TATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVRIISSGRGKKD 78
           T  P+  S  +Q+RKLPSPQEL+SHYESQGL S +AS+KVIEDLQ+AL R+ISSGR KKD
Sbjct: 6   TPKPLPQSQ-SQKRKLPSPQELISHYESQGLDSREASVKVIEDLQSALFRVISSGRAKKD 65

Query: 79  KLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAVMPHVFGALAN 138
           KLL+D SRK+D+TN+RLA++D KLDSKPGY QTFA+GLASG  L G  +V+PH  GA++ 
Sbjct: 66  KLLLDASRKLDSTNSRLAVVDAKLDSKPGYVQTFAIGLASGFALKGFDSVLPHFVGAVSQ 125

Query: 139 IWSSVSKFTKHS 151
           IWSSV   TK S
Sbjct: 126 IWSSVRTVTKDS 136

[Close]
BLAST of Cp4.1LG03g15140 vs. TrEMBL
Match: I3SVY9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.4e-39
Identity = 81/119 (68.07%), Postives = 103/119 (86.55%), Query Frame = 1 

Query: 32  RKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVRIISSGRGKKDKLLVDTSRKIDAT 91
           +KLPSP+EL+SHYESQG+ + +AS+KVIEDLQ AL  +ISSGRGKKDKLL D+SRK+DA 
Sbjct: 22  KKLPSPRELISHYESQGMETEEASLKVIEDLQKALFGVISSGRGKKDKLLSDSSRKMDAV 81

Query: 92  NTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAVMPHVFGALANIWSSVSKFTKHS 151
           N+RLAILD+KLDSKPGY +TFA+G+ASG+ L GIGAV+PH+ G L+ IW+SV+  +K S
Sbjct: 82  NSRLAILDMKLDSKPGYVETFAIGVASGAALKGIGAVLPHIIGPLSQIWNSVTIASKSS 140

[Close]
BLAST of Cp4.1LG03g15140 vs. TrEMBL
Match: I3T0J4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.3e-39
Identity = 84/138 (60.87%), Postives = 110/138 (79.71%), Query Frame = 1 

Query: 13  LHQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVRIISS 72
           L   N  + P   +  + ++KLPSP+EL+SHYESQG+ + +AS+KVIEDLQ AL  +ISS
Sbjct: 4   LPASNLPSKPGIKAKPSIKKKLPSPRELISHYESQGMETEEASLKVIEDLQKALFGVISS 63

Query: 73  GRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAVMPHV 132
           GRGKKDKLL D+SRK+DA N+RLAILD+KLDSKPGY +TFA+G+ASG+ L GIGAV+PH+
Sbjct: 64  GRGKKDKLLSDSSRKMDAVNSRLAILDMKLDSKPGYVETFAIGVASGAALKGIGAVLPHI 123

Query: 133 FGALANIWSSVSKFTKHS 151
            G L+ IW+SV+  +K S
Sbjct: 124 IGPLSQIWNSVTIASKSS 141

[Close]
BLAST of Cp4.1LG03g15140 vs. TrEMBL
Match: A0A0B2PFX5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_010877 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 7.9e-38
Identity = 81/136 (59.56%), Postives = 104/136 (76.47%), Query Frame = 1 

Query: 15  QDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVRIISSGR 74
           + +N   P      +++ KLP+P+EL+SHYES+G+ S DAS+KVIEDLQ AL R+ISSG+
Sbjct: 2   ETSNVTIPKVGPKPSRKVKLPTPKELISHYESKGMDSQDASLKVIEDLQKALFRVISSGK 61

Query: 75  GKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAVMPHVFG 134
           GK DKLL ++SRKIDA N RL +LD+KLDSKP Y +TFA+GLASG+ L GIGAV+PH+  
Sbjct: 62  GKHDKLLTESSRKIDAINNRLTVLDMKLDSKPAYVETFAIGLASGAALKGIGAVVPHIIA 121

Query: 135 ALANIWSSVSKFTKHS 151
            LA IW+SVS   K S
Sbjct: 122 PLAQIWNSVSSAIKSS 137

[Close]
BLAST of Cp4.1LG03g15140 vs. TAIR10
Match: AT1G16790.1 (AT1G16790.1 ribosomal protein-related)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-33
Identity = 77/136 (56.62%), Postives = 96/136 (70.59%), Query Frame = 1 

Query: 18  NTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVRIISSGRG-- 77
           N A    S    + +K P+P EL+SHY+ +GL   +ASIKVIEDLQNALVR++SS R   
Sbjct: 8   NAAEETKSEQKQKSKKFPTPTELISHYQKRGLEPAEASIKVIEDLQNALVRVVSSSRNAS 67

Query: 78  KKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAVMPHVFGA 137
            KDKL+ D +RKIDA N RLA++D KL++KPGY +TFALGLASG+ LNGI AV PHV   
Sbjct: 68  SKDKLVTD-ARKIDAINGRLAVVDAKLETKPGYVETFALGLASGATLNGISAVWPHVTRG 127

Query: 138 LANIWSSVSKFTKHSS 152
           +  IWS+V   T  SS
Sbjct: 128 IGQIWSAVRIGTDPSS 142

[Close]
BLAST of Cp4.1LG03g15140 vs. NCBI nr
Match: gi|659086761|ref|XP_008444097.1| (PREDICTED: uncharacterized protein LOC103487537 [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 1.9e-53
Identity = 115/150 (76.67%), Postives = 127/150 (84.67%), Query Frame = 1 

Query: 1   MADSNSPATQNSLHQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
           M DS SPA  NSL Q  +  +P   S    RRK PSPQEL+SHYESQG TSHDASIKVI+
Sbjct: 1   MEDSGSPAPPNSLPQAQHNISPAVRS----RRKPPSPQELISHYESQGHTSHDASIKVID 60

Query: 61  DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
           DLQNAL +IISSGRGKKDKLL++TSRKIDATN+RLA+LDLKLDSKPGYA+TFALGLASGS
Sbjct: 61  DLQNALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGS 120

Query: 121 VLNGIGAVMPHVFGALANIWSSVSKFTKHS 151
           VLNG+G VMPHVFGAL NIWSSV+  TKHS
Sbjct: 121 VLNGLGTVMPHVFGALTNIWSSVTNLTKHS 146

[Close]
BLAST of Cp4.1LG03g15140 vs. NCBI nr
Match: gi|778694548|ref|XP_011653828.1| (PREDICTED: uncharacterized protein LOC101209567 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 6.8e-51
Identity = 111/150 (74.00%), Postives = 124/150 (82.67%), Query Frame = 1 

Query: 1   MADSNSPATQNSLHQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
           M DS SPA+ NSL +  +  +P   S     RK PSPQEL+SHYESQGLTSHDASIKVI+
Sbjct: 1   MEDSGSPASPNSLPKGQDNISPTVRSV----RKPPSPQELISHYESQGLTSHDASIKVID 60

Query: 61  DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
           DLQNAL RIISSGRG KDK L++TSRK+DATN+RLA+LDLKLDSKPGYA+TFALGLASGS
Sbjct: 61  DLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALGLASGS 120

Query: 121 VLNGIGAVMPHVFGALANIWSSVSKFTKHS 151
           VLNG G VMPHVF AL NIWSSV+  TKHS
Sbjct: 121 VLNGFGTVMPHVFRALTNIWSSVTNLTKHS 146

[Close]
BLAST of Cp4.1LG03g15140 vs. NCBI nr
Match: gi|1009113981|ref|XP_015873439.1| (PREDICTED: uncharacterized protein LOC107410521 [Ziziphus jujuba])

HSP 1 Score: 175.3 bits (443), Expect = 8.3e-41
Identity = 93/142 (65.49%), Postives = 110/142 (77.46%), Query Frame = 1 

Query: 9   TQNSLHQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVR 68
           T NSL Q   TA     S G ++ KLPSPQEL+SHYES+GL S +AS+KVIEDLQ AL R
Sbjct: 6   TPNSLPQKPGTAP----SQGNKKMKLPSPQELISHYESKGLDSQEASMKVIEDLQAALFR 65

Query: 69  IISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAV 128
           +ISSGRG+KDKLL +TSRKID TN+RLAILD+K+DSKPGY Q+FALG+ASG  L GIG+V
Sbjct: 66  VISSGRGRKDKLLAETSRKIDTTNSRLAILDMKVDSKPGYGQSFALGVASGLTLKGIGSV 125

Query: 129 MPHVFGALANIWSSVSKFTKHS 151
            PHV GA++ IW S    TK S
Sbjct: 126 FPHVIGAISQIWDSARSVTKDS 143

[Close]
BLAST of Cp4.1LG03g15140 vs. NCBI nr
Match: gi|703070282|ref|XP_010088747.1| (hypothetical protein L484_001366 [Morus notabilis])

HSP 1 Score: 173.7 bits (439), Expect = 2.4e-40
Identity = 88/132 (66.67%), Postives = 107/132 (81.06%), Query Frame = 1 

Query: 19  TATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVRIISSGRGKKD 78
           T  P+  S  +Q+RKLPSPQEL+SHYESQGL S +AS+KVIEDLQ+AL R+ISSGR KKD
Sbjct: 6   TPKPLPQSQ-SQKRKLPSPQELISHYESQGLDSREASVKVIEDLQSALFRVISSGRAKKD 65

Query: 79  KLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAVMPHVFGALAN 138
           KLL+D SRK+D+TN+RLA++D KLDSKPGY QTFA+GLASG  L G  +V+PH  GA++ 
Sbjct: 66  KLLLDASRKLDSTNSRLAVVDAKLDSKPGYVQTFAIGLASGFALKGFDSVLPHFVGAVSQ 125

Query: 139 IWSSVSKFTKHS 151
           IWSSV   TK S
Sbjct: 126 IWSSVRTVTKDS 136

[Close]
BLAST of Cp4.1LG03g15140 vs. NCBI nr
Match: gi|388512739|gb|AFK44431.1| (unknown [Lotus japonicus])

HSP 1 Score: 168.7 bits (426), Expect = 7.8e-39
Identity = 81/119 (68.07%), Postives = 103/119 (86.55%), Query Frame = 1 

Query: 32  RKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVRIISSGRGKKDKLLVDTSRKIDAT 91
           +KLPSP+EL+SHYESQG+ + +AS+KVIEDLQ AL  +ISSGRGKKDKLL D+SRK+DA 
Sbjct: 22  KKLPSPRELISHYESQGMETEEASLKVIEDLQKALFGVISSGRGKKDKLLSDSSRKMDAV 81

Query: 92  NTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAVMPHVFGALANIWSSVSKFTKHS 151
           N+RLAILD+KLDSKPGY +TFA+G+ASG+ L GIGAV+PH+ G L+ IW+SV+  +K S
Sbjct: 82  NSRLAILDMKLDSKPGYVETFAIGVASGAALKGIGAVLPHIIGPLSQIWNSVTIASKSS 140

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g15140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g15140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3B6_CUCSA4.7e-5174.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G385280 PE=4 SV=1[more]
W9SDG9_9ROSA1.7e-4066.67Uncharacterized protein OS=Morus notabilis GN=L484_001366 PE=4 SV=1[more]
I3SVY9_LOTJA5.4e-3968.07Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
I3T0J4_LOTJA9.3e-3960.87Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A0B2PFX5_GLYSO7.9e-3859.56Uncharacterized protein OS=Glycine soja GN=glysoja_010877 PE=4 SV=1[more]
BLAST of Cp4.1LG03g15140 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G16790.11.8e-3356.62 ribosomal protein-related[more]
BLAST of Cp4.1LG03g15140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086761|ref|XP_008444097.1|1.9e-5376.67PREDICTED: uncharacterized protein LOC103487537 [Cucumis melo][more]
gi|778694548|ref|XP_011653828.1|6.8e-5174.00PREDICTED: uncharacterized protein LOC101209567 [Cucumis sativus][more]
gi|1009113981|ref|XP_015873439.1|8.3e-4165.49PREDICTED: uncharacterized protein LOC107410521 [Ziziphus jujuba][more]
gi|703070282|ref|XP_010088747.1|2.4e-4066.67hypothetical protein L484_001366 [Morus notabilis][more]
gi|388512739|gb|AFK44431.1|7.8e-3968.07unknown [Lotus japonicus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g15140.1Cp4.1LG03g15140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g15140CmoCh14G012050Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g15140Cla010943Watermelon (97103) v1cpewmB602
Cp4.1LG03g15140MELO3C010416Melon (DHL92) v3.5.1cpemeB590
Cp4.1LG03g15140ClCG07G014710Watermelon (Charleston Gray)cpewcgB571
Cp4.1LG03g15140Lsi07G006830Bottle gourd (USVL1VR-Ls)cpelsiB516
Cp4.1LG03g15140MELO3C010416.2Melon (DHL92) v3.6.1cpemedB700
Cp4.1LG03g15140Bhi08G001830Wax gourdcpewgoB0814
Cp4.1LG03g15140Carg15861Silver-seed gourdcarcpeB0455
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g15140Cucurbita pepo (Zucchini)cpecpeB451
Cp4.1LG03g15140Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g15140Cucurbita maxima (Rimu)cmacpeB493
Cp4.1LG03g15140Cucurbita moschata (Rifu)cmocpeB452
Cp4.1LG03g15140Silver-seed gourdcarcpeB0287