CmoCh14G012050 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G012050
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRibosomal-like protein, putative
LocationCmo_Chr14 : 10260402 .. 10261582 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATTCAAATTCACCAGCGACCCAAAATTCCCTCCCCCAAGACAACAATACTGCAACTCCCATGGCGTCTTCAGGCGGAGCCCAAAGAAGAAAGCTTCCTTCCCCACAGGAGCTCGTATCCCACTACGAATCCCAAGGCCTCACTTCTCACGATGCTTCAATCAAGGTAATCGAAGACCTTCAAAATGCTCTTGTAAGGATCATCTCCTCCGGCAGAGGCAAGAAGGACAAGCTCCTGGTGGATACCTCAAGGAAGATCGACGCCACCAATACCCGTCTTGCCATTCTCGACCTAAAGTTGGACTCCAAGCCCGGCTATGCCCAGACTTTTGCCCTAGGCTTGGCTTCTGGATCTGTTTTGAATGGAATTGGCGCCGTGATGCCCCATGTTTTTGGGGCTATCGCCAATATTTGGAGCTCTGTTAGTAAATTCACTAAGCATTCTTCTTGAATTGGAACGAACGTCGTTTTTCACTTTCGTGATTTTGTTTTCCTTTTAGTTAGTCGGGATTTTTCTGGTTGTTTTCCGATCGATTATGGTTAGATACTCAGAAAATGCTAATATTTGATTAATATGATTTTCGATTCCCATCCAACGATTCTTTCTCATCCATTAGAAATCAATAAAGGTAAGTGAAAAGAATGTCGAAATCAAACATTCTCTCTTCCAGATGACGCTGTTCTCTTTTGCAGGGGAAAGTGAGGAAGGCTGACAATGTTTTAGAACTCTTGAACAAGGACATCCACGCAGGTTACTATCTTAATTAAGTGTAAATGTTTTTATATTCCAGCTCAAATACTGCTGTGATGGTGGCCAATTCTCTCCGAATATCTCTGTTAATATCCATGGAAAGAACCTAGGACTTTTGGCTGAGTTCTTGTGCATATGAAGAGGTATGACCTTGATATGTTGTTTGAGGCATGCTGATATATGTGATAGCTGCTAGGAGTTGCCTGTTGATGTTTGCAGGGAGATAAACTGGCTATACAAGAAAGGTATTCACTGGCCTATAGGAGAACCTCTGTTTTAGTTTGAAAAGAGGGATATTTGAGCTATAATTTAGGTAAACAAGGCTCATGGTTTGTCACATATGTGTTTTAGAGGCTCCTGCTTTCTGGATGGTAAGCCGGGAGCTAGCTAGAGTGATTGGAAAGGGTAGTACAGGGGATGTCTAA

mRNA sequence

ATGGCGGATTCAAATTCACCAGCGACCCAAAATTCCCTCCCCCAAGACAACAATACTGCAACTCCCATGGCGTCTTCAGGCGGAGCCCAAAGAAGAAAGCTTCCTTCCCCACAGGAGCTCGTATCCCACTACGAATCCCAAGGCCTCACTTCTCACGATGCTTCAATCAAGGTAATCGAAGACCTTCAAAATGCTCTTGTAAGGATCATCTCCTCCGGCAGAGGCAAGAAGGACAAGCTCCTGGTGGATACCTCAAGGAAGATCGACGCCACCAATACCCGTCTTGCCATTCTCGACCTAAAGTTGGACTCCAAGCCCGGCTATGCCCAGACTTTTGCCCTAGGCTTGGCTTCTGGATCTGTTTTGAATGGAATTGGCGCCGTGATGCCCCATGTTTTTGGGGCTATCGCCAATATTTGGAGCTCTGGGAAAGTGAGGAAGGCTGACAATGTTTTAGAACTCTTGAACAAGGACATCCACGCAGAGGCTCCTGCTTTCTGGATGGTAAGCCGGGAGCTAGCTAGAGTGATTGGAAAGGGTAGTACAGGGGATGTCTAA

Coding sequence (CDS)

ATGGCGGATTCAAATTCACCAGCGACCCAAAATTCCCTCCCCCAAGACAACAATACTGCAACTCCCATGGCGTCTTCAGGCGGAGCCCAAAGAAGAAAGCTTCCTTCCCCACAGGAGCTCGTATCCCACTACGAATCCCAAGGCCTCACTTCTCACGATGCTTCAATCAAGGTAATCGAAGACCTTCAAAATGCTCTTGTAAGGATCATCTCCTCCGGCAGAGGCAAGAAGGACAAGCTCCTGGTGGATACCTCAAGGAAGATCGACGCCACCAATACCCGTCTTGCCATTCTCGACCTAAAGTTGGACTCCAAGCCCGGCTATGCCCAGACTTTTGCCCTAGGCTTGGCTTCTGGATCTGTTTTGAATGGAATTGGCGCCGTGATGCCCCATGTTTTTGGGGCTATCGCCAATATTTGGAGCTCTGGGAAAGTGAGGAAGGCTGACAATGTTTTAGAACTCTTGAACAAGGACATCCACGCAGAGGCTCCTGCTTTCTGGATGGTAAGCCGGGAGCTAGCTAGAGTGATTGGAAAGGGTAGTACAGGGGATGTCTAA
Homology
[Close]
BLAST of CmoCh14G012050 vs. TrEMBL
Match: A0A0A0L3B6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G385280 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.2e-48
Identity = 106/142 (74.65%), Postives = 119/142 (83.80%), Query Frame = 1 

Query: 1   MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
           M DS SPA+ NSLP+  +  +P   S     RK PSPQEL+SHYESQGLTSHDASIKVI+
Sbjct: 1   MEDSGSPASPNSLPKGQDNISPTVRSV----RKPPSPQELISHYESQGLTSHDASIKVID 60

Query: 61  DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
           DLQNAL RIISSGRG KDK L++TSRK+DATN+RLA+LDLKLDSKPGYA+TFALGLASGS
Sbjct: 61  DLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALGLASGS 120

Query: 121 VLNGIGAVMPHVFGAIANIWSS 143
           VLNG G VMPHVF A+ NIWSS
Sbjct: 121 VLNGFGTVMPHVFRALTNIWSS 138

[Close]
BLAST of CmoCh14G012050 vs. TrEMBL
Match: W9SDG9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001366 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 87/144 (60.42%), Postives = 107/144 (74.31%), Query Frame = 1 

Query: 7   PATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNAL 66
           P T   LPQ  +           Q+RKLPSPQEL+SHYESQGL S +AS+KVIEDLQ+AL
Sbjct: 4   PGTPKPLPQSQS-----------QKRKLPSPQELISHYESQGLDSREASVKVIEDLQSAL 63

Query: 67  VRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIG 126
            R+ISSGR KKDKLL+D SRK+D+TN+RLA++D KLDSKPGY QTFA+GLASG  L G  
Sbjct: 64  FRVISSGRAKKDKLLLDASRKLDSTNSRLAVVDAKLDSKPGYVQTFAIGLASGFALKGFD 123

Query: 127 AVMPHVFGAIANIWSSGKVRKADN 151
           +V+PH  GA++ IWSS +    D+
Sbjct: 124 SVLPHFVGAVSQIWSSVRTVTKDS 136

[Close]
BLAST of CmoCh14G012050 vs. TrEMBL
Match: I3T0J4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.9e-38
Identity = 81/130 (62.31%), Postives = 106/130 (81.54%), Query Frame = 1 

Query: 13  LPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVRIISS 72
           LP  N  + P   +  + ++KLPSP+EL+SHYESQG+ + +AS+KVIEDLQ AL  +ISS
Sbjct: 4   LPASNLPSKPGIKAKPSIKKKLPSPRELISHYESQGMETEEASLKVIEDLQKALFGVISS 63

Query: 73  GRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAVMPHV 132
           GRGKKDKLL D+SRK+DA N+RLAILD+KLDSKPGY +TFA+G+ASG+ L GIGAV+PH+
Sbjct: 64  GRGKKDKLLSDSSRKMDAVNSRLAILDMKLDSKPGYVETFAIGVASGAALKGIGAVLPHI 123

Query: 133 FGAIANIWSS 143
            G ++ IW+S
Sbjct: 124 IGPLSQIWNS 133

[Close]
BLAST of CmoCh14G012050 vs. TrEMBL
Match: I3SVY9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 9.6e-38
Identity = 77/111 (69.37%), Postives = 98/111 (88.29%), Query Frame = 1 

Query: 32  RKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVRIISSGRGKKDKLLVDTSRKIDAT 91
           +KLPSP+EL+SHYESQG+ + +AS+KVIEDLQ AL  +ISSGRGKKDKLL D+SRK+DA 
Sbjct: 22  KKLPSPRELISHYESQGMETEEASLKVIEDLQKALFGVISSGRGKKDKLLSDSSRKMDAV 81

Query: 92  NTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAVMPHVFGAIANIWSS 143
           N+RLAILD+KLDSKPGY +TFA+G+ASG+ L GIGAV+PH+ G ++ IW+S
Sbjct: 82  NSRLAILDMKLDSKPGYVETFAIGVASGAALKGIGAVLPHIIGPLSQIWNS 132

[Close]
BLAST of CmoCh14G012050 vs. TrEMBL
Match: A0A0B2PFX5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_010877 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.0e-36
Identity = 76/128 (59.38%), Postives = 100/128 (78.12%), Query Frame = 1 

Query: 15  QDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVRIISSGR 74
           + +N   P      +++ KLP+P+EL+SHYES+G+ S DAS+KVIEDLQ AL R+ISSG+
Sbjct: 2   ETSNVTIPKVGPKPSRKVKLPTPKELISHYESKGMDSQDASLKVIEDLQKALFRVISSGK 61

Query: 75  GKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAVMPHVFG 134
           GK DKLL ++SRKIDA N RL +LD+KLDSKP Y +TFA+GLASG+ L GIGAV+PH+  
Sbjct: 62  GKHDKLLTESSRKIDAINNRLTVLDMKLDSKPAYVETFAIGLASGAALKGIGAVVPHIIA 121

Query: 135 AIANIWSS 143
            +A IW+S
Sbjct: 122 PLAQIWNS 129

[Close]
BLAST of CmoCh14G012050 vs. TAIR10
Match: AT1G16790.1 (AT1G16790.1 ribosomal protein-related)

HSP 1 Score: 139.0 bits (349), Expect = 2.9e-33
Identity = 75/134 (55.97%), Postives = 95/134 (70.90%), Query Frame = 1 

Query: 14  PQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVRIISSG 73
           P   N A    S    + +K P+P EL+SHY+ +GL   +ASIKVIEDLQNALVR++SS 
Sbjct: 4   PATPNAAEETKSEQKQKSKKFPTPTELISHYQKRGLEPAEASIKVIEDLQNALVRVVSSS 63

Query: 74  RG--KKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAVMPH 133
           R    KDKL+ D +RKIDA N RLA++D KL++KPGY +TFALGLASG+ LNGI AV PH
Sbjct: 64  RNASSKDKLVTD-ARKIDAINGRLAVVDAKLETKPGYVETFALGLASGATLNGISAVWPH 123

Query: 134 VFGAIANIWSSGKV 146
           V   I  IWS+ ++
Sbjct: 124 VTRGIGQIWSAVRI 136

[Close]
BLAST of CmoCh14G012050 vs. NCBI nr
Match: gi|659086761|ref|XP_008444097.1| (PREDICTED: uncharacterized protein LOC103487537 [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 4.9e-51
Identity = 110/142 (77.46%), Postives = 122/142 (85.92%), Query Frame = 1 

Query: 1   MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
           M DS SPA  NSLPQ  +  +P   S    RRK PSPQEL+SHYESQG TSHDASIKVI+
Sbjct: 1   MEDSGSPAPPNSLPQAQHNISPAVRS----RRKPPSPQELISHYESQGHTSHDASIKVID 60

Query: 61  DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
           DLQNAL +IISSGRGKKDKLL++TSRKIDATN+RLA+LDLKLDSKPGYA+TFALGLASGS
Sbjct: 61  DLQNALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGS 120

Query: 121 VLNGIGAVMPHVFGAIANIWSS 143
           VLNG+G VMPHVFGA+ NIWSS
Sbjct: 121 VLNGLGTVMPHVFGALTNIWSS 138

[Close]
BLAST of CmoCh14G012050 vs. NCBI nr
Match: gi|778694548|ref|XP_011653828.1| (PREDICTED: uncharacterized protein LOC101209567 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 1.7e-48
Identity = 106/142 (74.65%), Postives = 119/142 (83.80%), Query Frame = 1 

Query: 1   MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
           M DS SPA+ NSLP+  +  +P   S     RK PSPQEL+SHYESQGLTSHDASIKVI+
Sbjct: 1   MEDSGSPASPNSLPKGQDNISPTVRSV----RKPPSPQELISHYESQGLTSHDASIKVID 60

Query: 61  DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
           DLQNAL RIISSGRG KDK L++TSRK+DATN+RLA+LDLKLDSKPGYA+TFALGLASGS
Sbjct: 61  DLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALGLASGS 120

Query: 121 VLNGIGAVMPHVFGAIANIWSS 143
           VLNG G VMPHVF A+ NIWSS
Sbjct: 121 VLNGFGTVMPHVFRALTNIWSS 138

[Close]
BLAST of CmoCh14G012050 vs. NCBI nr
Match: gi|1009113981|ref|XP_015873439.1| (PREDICTED: uncharacterized protein LOC107410521 [Ziziphus jujuba])

HSP 1 Score: 176.4 bits (446), Expect = 4.6e-41
Identity = 92/136 (67.65%), Postives = 109/136 (80.15%), Query Frame = 1 

Query: 9   TQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVR 68
           T NSLPQ   TA     S G ++ KLPSPQEL+SHYES+GL S +AS+KVIEDLQ AL R
Sbjct: 6   TPNSLPQKPGTAP----SQGNKKMKLPSPQELISHYESKGLDSQEASMKVIEDLQAALFR 65

Query: 69  IISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAV 128
           +ISSGRG+KDKLL +TSRKID TN+RLAILD+K+DSKPGY Q+FALG+ASG  L GIG+V
Sbjct: 66  VISSGRGRKDKLLAETSRKIDTTNSRLAILDMKVDSKPGYGQSFALGVASGLTLKGIGSV 125

Query: 129 MPHVFGAIANIWSSGK 145
            PHV GAI+ IW S +
Sbjct: 126 FPHVIGAISQIWDSAR 137

[Close]
BLAST of CmoCh14G012050 vs. NCBI nr
Match: gi|703070282|ref|XP_010088747.1| (hypothetical protein L484_001366 [Morus notabilis])

HSP 1 Score: 170.2 bits (430), Expect = 3.3e-39
Identity = 87/144 (60.42%), Postives = 107/144 (74.31%), Query Frame = 1 

Query: 7   PATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNAL 66
           P T   LPQ  +           Q+RKLPSPQEL+SHYESQGL S +AS+KVIEDLQ+AL
Sbjct: 4   PGTPKPLPQSQS-----------QKRKLPSPQELISHYESQGLDSREASVKVIEDLQSAL 63

Query: 67  VRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIG 126
            R+ISSGR KKDKLL+D SRK+D+TN+RLA++D KLDSKPGY QTFA+GLASG  L G  
Sbjct: 64  FRVISSGRAKKDKLLLDASRKLDSTNSRLAVVDAKLDSKPGYVQTFAIGLASGFALKGFD 123

Query: 127 AVMPHVFGAIANIWSSGKVRKADN 151
           +V+PH  GA++ IWSS +    D+
Sbjct: 124 SVLPHFVGAVSQIWSSVRTVTKDS 136

[Close]
BLAST of CmoCh14G012050 vs. NCBI nr
Match: gi|388515949|gb|AFK46036.1| (unknown [Lotus japonicus])

HSP 1 Score: 167.2 bits (422), Expect = 2.8e-38
Identity = 81/130 (62.31%), Postives = 106/130 (81.54%), Query Frame = 1 

Query: 13  LPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVRIISS 72
           LP  N  + P   +  + ++KLPSP+EL+SHYESQG+ + +AS+KVIEDLQ AL  +ISS
Sbjct: 4   LPASNLPSKPGIKAKPSIKKKLPSPRELISHYESQGMETEEASLKVIEDLQKALFGVISS 63

Query: 73  GRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAVMPHV 132
           GRGKKDKLL D+SRK+DA N+RLAILD+KLDSKPGY +TFA+G+ASG+ L GIGAV+PH+
Sbjct: 64  GRGKKDKLLSDSSRKMDAVNSRLAILDMKLDSKPGYVETFAIGVASGAALKGIGAVLPHI 123

Query: 133 FGAIANIWSS 143
            G ++ IW+S
Sbjct: 124 IGPLSQIWNS 133

The following BLAST results are available for this feature:
BLAST of CmoCh14G012050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh14G012050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3B6_CUCSA1.2e-4874.65Uncharacterized protein OS=Cucumis sativus GN=Csa_4G385280 PE=4 SV=1[more]
W9SDG9_9ROSA2.3e-3960.42Uncharacterized protein OS=Morus notabilis GN=L484_001366 PE=4 SV=1[more]
I3T0J4_LOTJA1.9e-3862.31Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
I3SVY9_LOTJA9.6e-3869.37Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A0B2PFX5_GLYSO4.0e-3659.38Uncharacterized protein OS=Glycine soja GN=glysoja_010877 PE=4 SV=1[more]
BLAST of CmoCh14G012050 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G16790.12.9e-3355.97 ribosomal protein-related[more]
BLAST of CmoCh14G012050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086761|ref|XP_008444097.1|4.9e-5177.46PREDICTED: uncharacterized protein LOC103487537 [Cucumis melo][more]
gi|778694548|ref|XP_011653828.1|1.7e-4874.65PREDICTED: uncharacterized protein LOC101209567 [Cucumis sativus][more]
gi|1009113981|ref|XP_015873439.1|4.6e-4167.65PREDICTED: uncharacterized protein LOC107410521 [Ziziphus jujuba][more]
gi|703070282|ref|XP_010088747.1|3.3e-3960.42hypothetical protein L484_001366 [Morus notabilis][more]
gi|388515949|gb|AFK46036.1|2.8e-3862.31unknown [Lotus japonicus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G012050.1CmoCh14G012050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh14G012050Cla010943Watermelon (97103) v1cmowmB220
CmoCh14G012050MELO3C010416Melon (DHL92) v3.5.1cmomeB234
CmoCh14G012050ClCG07G014710Watermelon (Charleston Gray)cmowcgB230
CmoCh14G012050Lsi07G006830Bottle gourd (USVL1VR-Ls)cmolsiB244
CmoCh14G012050Cp4.1LG03g15140Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G012050MELO3C010416.2Melon (DHL92) v3.6.1cmomedB266
CmoCh14G012050Bhi08G001830Wax gourdcmowgoB0347
CmoCh14G012050Carg15861Silver-seed gourdcarcmoB0445
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G012050Cucurbita maxima (Rimu)cmacmoB245
CmoCh14G012050Cucurbita maxima (Rimu)cmacmoB461
CmoCh14G012050Cucurbita pepo (Zucchini)cmocpeB244
CmoCh14G012050Silver-seed gourdcarcmoB0283
CmoCh14G012050Watermelon (97103) v2cmowmbB255
CmoCh14G012050Cucurbita moschata (Rifu)cmocmoB202