Cp4.1LG03g09440 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG03g09440
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 6964965 .. 6965291 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTCTCTGTTATTGGTAATGGATATCATCGCCATCTCCTTCAGACTCGGTTGCCCACTCCTTCTTCTGTAATGGCTTCTGCACCGCATTCTGTCCCCAGGCTCAAGAATCATCGCCCTAACTCAATAGCCGTTGTCCCTAAACACCCTCAATTCCTCCCCGACTCCCCAAATGGTAAGCTCTCCAATGGGGGCCAGAGGCGCCACTCGAAGTCATACCTAGAGAGACAGTCCGCTATTGCTCAAGTTAAGGACTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGTTCTTCTTCTACTTCTTTAAATGTGTATTTGGACTTTGA

mRNA sequence

ATGGAACTCTCTGTTATTGGTAATGGATATCATCGCCATCTCCTTCAGACTCGGTTGCCCACTCCTTCTTCTGTAATGGCTTCTGCACCGCATTCTGTCCCCAGGCTCAAGAATCATCGCCCTAACTCAATAGCCGTTGTCCCTAAACACCCTCAATTCCTCCCCGACTCCCCAAATGGTAAGCTCTCCAATGGGGGCCAGAGGCGCCACTCGAAGTCATACCTAGAGAGACAGTCCGCTATTGCTCAAGTTAAGGACTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGTTCTTCTTCTACTTCTTTAAATGTGTATTTGGACTTTGA

Coding sequence (CDS)

ATGGAACTCTCTGTTATTGGTAATGGATATCATCGCCATCTCCTTCAGACTCGGTTGCCCACTCCTTCTTCTGTAATGGCTTCTGCACCGCATTCTGTCCCCAGGCTCAAGAATCATCGCCCTAACTCAATAGCCGTTGTCCCTAAACACCCTCAATTCCTCCCCGACTCCCCAAATGGTAAGCTCTCCAATGGGGGCCAGAGGCGCCACTCGAAGTCATACCTAGAGAGACAGTCCGCTATTGCTCAAGTTAAGGACTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGTTCTTCTTCTACTTCTTTAAATGTGTATTTGGACTTTGA

Protein sequence

MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAVVPKHPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARFFFYFFKCVFGL
BLAST of Cp4.1LG03g09440 vs. TrEMBL
Match: A0A0A0LI66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842680 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.3e-36
Identity = 76/101 (75.25%), Postives = 89/101 (88.12%), Query Frame = 1

Query: 1   MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAVVPKHPQFLPDSPNG 60
           MELS++ NGYHRH+L+TRLPTPSSVMASA H+V  +KN++ NS+A++PK PQFLP S N 
Sbjct: 1   MELSLVANGYHRHVLRTRLPTPSSVMASASHAVTTIKNNQSNSVAILPKEPQFLPGSSNA 60

Query: 61  KLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARFFFYF 102
           KL NG Q+RHSKSYLERQSAIAQVKDCSELAPALARFFF +
Sbjct: 61  KLINGAQKRHSKSYLERQSAIAQVKDCSELAPALARFFFSY 101

BLAST of Cp4.1LG03g09440 vs. NCBI nr
Match: gi|700204613|gb|KGN59746.1| (hypothetical protein Csa_3G842680 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 7.5e-36
Identity = 76/101 (75.25%), Postives = 89/101 (88.12%), Query Frame = 1

Query: 1   MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAVVPKHPQFLPDSPNG 60
           MELS++ NGYHRH+L+TRLPTPSSVMASA H+V  +KN++ NS+A++PK PQFLP S N 
Sbjct: 1   MELSLVANGYHRHVLRTRLPTPSSVMASASHAVTTIKNNQSNSVAILPKEPQFLPGSSNA 60

Query: 61  KLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARFFFYF 102
           KL NG Q+RHSKSYLERQSAIAQVKDCSELAPALARFFF +
Sbjct: 61  KLINGAQKRHSKSYLERQSAIAQVKDCSELAPALARFFFSY 101

BLAST of Cp4.1LG03g09440 vs. NCBI nr
Match: gi|659130040|ref|XP_008464969.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-35
Identity = 75/97 (77.32%), Postives = 87/97 (89.69%), Query Frame = 1

Query: 1  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAVVPKHPQFLPDSPNG 60
          MELS++GNGYHRH+L+TRLPTP SVMASA H+VP LKN++ NS+A++PK PQFLP S N 
Sbjct: 1  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNS 60

Query: 61 KLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF 98
          KL NG Q+RHSKSYLERQSAIAQVKDCSELAPALAR+
Sbjct: 61 KLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARY 97

BLAST of Cp4.1LG03g09440 vs. NCBI nr
Match: gi|449446895|ref|XP_004141206.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-34
Identity = 73/97 (75.26%), Postives = 86/97 (88.66%), Query Frame = 1

Query: 1  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAVVPKHPQFLPDSPNG 60
          MELS++ NGYHRH+L+TRLPTPSSVMASA H+V  +KN++ NS+A++PK PQFLP S N 
Sbjct: 1  MELSLVANGYHRHVLRTRLPTPSSVMASASHAVTTIKNNQSNSVAILPKEPQFLPGSSNA 60

Query: 61 KLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF 98
          KL NG Q+RHSKSYLERQSAIAQVKDCSELAPALAR+
Sbjct: 61 KLINGAQKRHSKSYLERQSAIAQVKDCSELAPALARY 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LI66_CUCSA5.3e-3675.25Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842680 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700204613|gb|KGN59746.1|7.5e-3675.25hypothetical protein Csa_3G842680 [Cucumis sativus][more]
gi|659130040|ref|XP_008464969.1|1.3e-3577.32PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic ... [more]
gi|449446895|ref|XP_004141206.1|1.9e-3475.26PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g09440.1Cp4.1LG03g09440.1mRNA


The following gene(s) are paralogous to this gene:

None