CmoCh14G011160 (gene) Cucurbita moschata (Rifu)

NameCmoCh14G011160
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCmo_Chr14 : 7586955 .. 7587281 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTCTCTGTTATTGGTAATGGATATCATCGCCATCTCCTTCAGACTCGGTTGCCCACTCCTTCTTCTGTAATGGCTTCTGCACCGCATTCTGTCCCCAGGCTCAAGAATCATCGCCCTAACTCTATCGCCATTCTCCCTAAACAGCCTCAATTCCTCCCCGACTCCCCAAATGGTAAGCTCTCCAATGGCGGCCAGAGGCGCCACTCGAAGTCATACCTAGAGAGACAGTCCGCTATTGCTCAAGTTAAGGACTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGTTCTTCTTCTACTTCTTGAAATGTGTATTTGGACTTTGA

mRNA sequence

ATGGAACTCTCTGTTATTGGTAATGGATATCATCGCCATCTCCTTCAGACTCGGTTGCCCACTCCTTCTTCTGTAATGGCTTCTGCACCGCATTCTGTCCCCAGGCTCAAGAATCATCGCCCTAACTCTATCGCCATTCTCCCTAAACAGCCTCAATTCCTCCCCGACTCCCCAAATGGTAAGCTCTCCAATGGCGGCCAGAGGCGCCACTCGAAGTCATACCTAGAGAGACAGTCCGCTATTGCTCAAGTTAAGGACTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGTTCTTCTTCTACTTCTTGAAATGTGTATTTGGACTTTGA

Coding sequence (CDS)

ATGGAACTCTCTGTTATTGGTAATGGATATCATCGCCATCTCCTTCAGACTCGGTTGCCCACTCCTTCTTCTGTAATGGCTTCTGCACCGCATTCTGTCCCCAGGCTCAAGAATCATCGCCCTAACTCTATCGCCATTCTCCCTAAACAGCCTCAATTCCTCCCCGACTCCCCAAATGGTAAGCTCTCCAATGGCGGCCAGAGGCGCCACTCGAAGTCATACCTAGAGAGACAGTCCGCTATTGCTCAAGTTAAGGACTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGTTCTTCTTCTACTTCTTGAAATGTGTATTTGGACTTTGA
BLAST of CmoCh14G011160 vs. TrEMBL
Match: A0A0A0LI66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842680 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.8e-37
Identity = 79/102 (77.45%), Postives = 91/102 (89.22%), Query Frame = 1

Query: 1   MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNG 60
           MELS++ NGYHRH+L+TRLPTPSSVMASA H+V  +KN++ NS+AILPK+PQFLP S N 
Sbjct: 1   MELSLVANGYHRHVLRTRLPTPSSVMASASHAVTTIKNNQSNSVAILPKEPQFLPGSSNA 60

Query: 61  KLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARFFFYFL 103
           KL NG Q+RHSKSYLERQSAIAQVKDCSELAPALARFFF +L
Sbjct: 61  KLINGAQKRHSKSYLERQSAIAQVKDCSELAPALARFFFSYL 102

BLAST of CmoCh14G011160 vs. NCBI nr
Match: gi|700204613|gb|KGN59746.1| (hypothetical protein Csa_3G842680 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 4.0e-37
Identity = 79/102 (77.45%), Postives = 91/102 (89.22%), Query Frame = 1

Query: 1   MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNG 60
           MELS++ NGYHRH+L+TRLPTPSSVMASA H+V  +KN++ NS+AILPK+PQFLP S N 
Sbjct: 1   MELSLVANGYHRHVLRTRLPTPSSVMASASHAVTTIKNNQSNSVAILPKEPQFLPGSSNA 60

Query: 61  KLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARFFFYFL 103
           KL NG Q+RHSKSYLERQSAIAQVKDCSELAPALARFFF +L
Sbjct: 61  KLINGAQKRHSKSYLERQSAIAQVKDCSELAPALARFFFSYL 102

BLAST of CmoCh14G011160 vs. NCBI nr
Match: gi|659130040|ref|XP_008464969.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 2.0e-36
Identity = 77/97 (79.38%), Postives = 88/97 (90.72%), Query Frame = 1

Query: 1  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNG 60
          MELS++GNGYHRH+L+TRLPTP SVMASA H+VP LKN++ NS+AILPK+PQFLP S N 
Sbjct: 1  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNS 60

Query: 61 KLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF 98
          KL NG Q+RHSKSYLERQSAIAQVKDCSELAPALAR+
Sbjct: 61 KLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALARY 97

BLAST of CmoCh14G011160 vs. NCBI nr
Match: gi|449446895|ref|XP_004141206.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 2.9e-35
Identity = 75/97 (77.32%), Postives = 87/97 (89.69%), Query Frame = 1

Query: 1  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNG 60
          MELS++ NGYHRH+L+TRLPTPSSVMASA H+V  +KN++ NS+AILPK+PQFLP S N 
Sbjct: 1  MELSLVANGYHRHVLRTRLPTPSSVMASASHAVTTIKNNQSNSVAILPKEPQFLPGSSNA 60

Query: 61 KLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF 98
          KL NG Q+RHSKSYLERQSAIAQVKDCSELAPALAR+
Sbjct: 61 KLINGAQKRHSKSYLERQSAIAQVKDCSELAPALARY 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LI66_CUCSA2.8e-3777.45Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842680 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700204613|gb|KGN59746.1|4.0e-3777.45hypothetical protein Csa_3G842680 [Cucumis sativus][more]
gi|659130040|ref|XP_008464969.1|2.0e-3679.38PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic ... [more]
gi|449446895|ref|XP_004141206.1|2.9e-3577.32PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G011160.1CmoCh14G011160.1mRNA


The following gene(s) are paralogous to this gene:

None