Lsi03G013110 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G013110
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr03 : 23912642 .. 23913856 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGACAGTGAGTGGTTCGTTCAAATATCAACTGTTATCCACGGGCACCGTCGCGGTTGAGAGGGCGAACTGAACTCCCTCGCACTGTCTCGAAATGGAACTCTCTGTTATTGGTAATGGATATCATCGCCACGTCCTTCGGACTCGGTTGCCTACACCTTCTTCTGTAATGGCTTCTGCATCGCACGCTGTCCCCAGGCTCAAGAACAATCACTCTAACTCTATCGCAATTCTCCCTAAAGAGCCCCAATTCCTCCCCGACTCTCCAAAGGGTAAACTCTTCAATGGCGGTGAGAAGCGCCACTCGAAGTCATACCTAGAGAGACAGTCCGCTATTGCTCAAGTTAAAGATTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGTTCTTCTTTTACTTTGAATTGTGGGAAATCACTTGCTCCTCTTTACTTCGTTAGAATAGAAAGGCGTTTTCTTCTTAGTCAATGTTAGTTAATTATCGATTTTGGTAAAGAGCTATATGTAGTTGGATGGCAGCAAGAAAATTCTAGTGCTAGATTTTAGATGGAATTGTGTTGACAATGGATGATAGATGTAACCACGTAGGCCCAGGATTCACACCAAGATTCGAATTTTGGATTCAACACTTGACGGCCTTGACATTTACTACATTCTTGCGACCTGGCAATCCTTACTTGTTTTGAACTGTTTCTAGGTGTGAAAACTATCCCACATACCAAGAGTACTTTCAACATGCTTGGTTTTTTTCTTCTAATATCCGTGAGTGTCCGGCCAACTTGGTTCTCATTCACATGCTTCCTAGGAATATTTTTAGGAGGTTGCCTAACATAGAATTGCTCTAAGCTAAACACACTTAAATTTGGAGTTCCTATGATTGAGCCACCGAAAAAGAAAGTGCACTTTGTTTGTATACCGTGGATCTGTGGGGCTTGAAGATTTGTTGGACTCAAGCTCAAAAACAACAGATTTAACCTCTTCCTCGGCGAAGGCGGTAGAATGATGCTGATGTAGTTCGAGGCTTTGTTTTTAGCTTTTGGGTGAATTCTGTTTTCCCCTGTTTTTAGTACTCTGTTTTGGTTATTTCAGTTTGGGTTTTAAGTTGTATTTGTAGTTACCGTATAGTAACTTTGTTGGTTGCTATCAGGAGCTGTCTTGTAATTCCTTCGGGCTGGCTAGTATTTAAAGAGCTAGCCCCCATTTCACTAATAAGATCTTGA

mRNA sequence

CGGACAGTGAGTGGTTCGTTCAAATATCAACTGTTATCCACGGGCACCGTCGCGGTTGAGAGGGCGAACTGAACTCCCTCGCACTGTCTCGAAATGGAACTCTCTGTTATTGGTAATGGATATCATCGCCACGTCCTTCGGACTCGGTTGCCTACACCTTCTTCTGTAATGGCTTCTGCATCGCACGCTGTCCCCAGGCTCAAGAACAATCACTCTAACTCTATCGCAATTCTCCCTAAAGAGCCCCAATTCCTCCCCGACTCTCCAAAGGGTAAACTCTTCAATGGCGGTGAGAAGCGCCACTCGAAGTCATACCTAGAGAGACAGTCCGCTATTGCTCAAGTTAAAGATTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGAGCTGTCTTGTAATTCCTTCGGGCTGGCTAGTATTTAAAGAGCTAGCCCCCATTTCACTAATAAGATCTTGA

Coding sequence (CDS)

ATGGAACTCTCTGTTATTGGTAATGGATATCATCGCCACGTCCTTCGGACTCGGTTGCCTACACCTTCTTCTGTAATGGCTTCTGCATCGCACGCTGTCCCCAGGCTCAAGAACAATCACTCTAACTCTATCGCAATTCTCCCTAAAGAGCCCCAATTCCTCCCCGACTCTCCAAAGGGTAAACTCTTCAATGGCGGTGAGAAGCGCCACTCGAAGTCATACCTAGAGAGACAGTCCGCTATTGCTCAAGTTAAAGATTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGAGCTGTCTTGTAATTCCTTCGGGCTGGCTAGTATTTAAAGAGCTAGCCCCCATTTCACTAATAAGATCTTGA

Protein sequence

MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALARSCLVIPSGWLVFKELAPISLIRS

Homology

[Close]

BLAST of Lsi03G013110 vs. TrEMBL
Match: A0A0A0LI66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842680 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.1e-38
Identity = 84/110 (76.36%), Postives = 91/110 (82.73%), Query Frame = 1


Query: 1   MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKG 60
           MELS++ NGYHRHVLRTRLPTPSSVMASASHAV  +KNN SNS+AILPKEPQFLP S   
Sbjct: 1   MELSLVANGYHRHVLRTRLPTPSSVMASASHAVTTIKNNQSNSVAILPKEPQFLPGSSNA 60

Query: 61  KLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR---SCLVIPSGWLV 108
           KL NG +KRHSKSYLERQSAIAQVKDCSELAPALAR   S L     W++
Sbjct: 61  KLINGAQKRHSKSYLERQSAIAQVKDCSELAPALARFFFSYLFATCSWIL 110

[Close]

BLAST of Lsi03G013110 vs. NCBI nr
Match: gi|659130040|ref|XP_008464969.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 170.2 bits (430), Expect = 2.1e-39
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 1


Query: 1  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKG 60
          MELS++GNGYHRHVLRTRLPTP SVMASASHAVP LKNN SNS+AILPKEPQFLP S   
Sbjct: 1  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNS 60

Query: 61 KLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR 97
          KLFNG +KRHSKSYLERQSAIAQVKDCSELAPALAR
Sbjct: 61 KLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALAR 96

[Close]

BLAST of Lsi03G013110 vs. NCBI nr
Match: gi|700204613|gb|KGN59746.1| (hypothetical protein Csa_3G842680 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-37
Identity = 84/110 (76.36%), Postives = 91/110 (82.73%), Query Frame = 1


Query: 1   MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKG 60
           MELS++ NGYHRHVLRTRLPTPSSVMASASHAV  +KNN SNS+AILPKEPQFLP S   
Sbjct: 1   MELSLVANGYHRHVLRTRLPTPSSVMASASHAVTTIKNNQSNSVAILPKEPQFLPGSSNA 60

Query: 61  KLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR---SCLVIPSGWLV 108
           KL NG +KRHSKSYLERQSAIAQVKDCSELAPALAR   S L     W++
Sbjct: 61  KLINGAQKRHSKSYLERQSAIAQVKDCSELAPALARFFFSYLFATCSWIL 110

[Close]

BLAST of Lsi03G013110 vs. NCBI nr
Match: gi|449446895|ref|XP_004141206.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-37
Identity = 81/96 (84.38%), Postives = 86/96 (89.58%), Query Frame = 1


Query: 1  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKG 60
          MELS++ NGYHRHVLRTRLPTPSSVMASASHAV  +KNN SNS+AILPKEPQFLP S   
Sbjct: 1  MELSLVANGYHRHVLRTRLPTPSSVMASASHAVTTIKNNQSNSVAILPKEPQFLPGSSNA 60

Query: 61 KLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR 97
          KL NG +KRHSKSYLERQSAIAQVKDCSELAPALAR
Sbjct: 61 KLINGAQKRHSKSYLERQSAIAQVKDCSELAPALAR 96

The following BLAST results are available for this feature:

BLAST of Lsi03G013110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G013110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI66_CUCSA	8.1e-38	76.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842680 PE=4 SV=1	[more]

BLAST of Lsi03G013110 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi03G013110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130040\|ref\|XP_008464969.1\|	2.1e-39	87.50	PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic ...	[more]
gi\|700204613\|gb\|KGN59746.1\|	1.2e-37	76.36	hypothetical protein Csa_3G842680 [Cucumis sativus]	[more]
gi\|449446895\|ref\|XP_004141206.1\|	1.5e-37	84.38	PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G013110.1	Lsi03G013110.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G013110	Csa3G842680	Cucumber (Chinese Long) v2	culsiB186
Lsi03G013110	Cucsa.340390	Cucumber (Gy14) v1	cgylsiB551
Lsi03G013110	CmaCh14G011100	Cucurbita maxima (Rimu)	cmalsiB243
Lsi03G013110	CmoCh14G011160	Cucurbita moschata (Rifu)	cmolsiB231
Lsi03G013110	Cla017161	Watermelon (97103) v1	lsiwmB240
Lsi03G013110	MELO3C026616	Melon (DHL92) v3.5.1	lsimeB262
Lsi03G013110	ClCG10G013480	Watermelon (Charleston Gray)	lsiwcgB219
Lsi03G013110	MELO3C026617.2	Melon (DHL92) v3.6.1	lsimedB276
Lsi03G013110	Cla97C10G196260	Watermelon (97103) v2	lsiwmbB218
Lsi03G013110	Bhi11G001307	Wax gourd	lsiwgoB292
Lsi03G013110	Cp4.1LG03g09440	Cucurbita pepo (Zucchini)	cpelsiB505
Lsi03G013110	CsGy3G038120	Cucumber (Gy14) v2	cgyblsiB171
Lsi03G013110	Carg26633	Silver-seed gourd	carlsiB381
Lsi03G013110	CsaV3_3G043150	Cucumber (Chinese Long) v3	cuclsiB203

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G013110	Cucurbita maxima (Rimu)	cmalsiB240
Lsi03G013110	Cucurbita moschata (Rifu)	cmolsiB228
Lsi03G013110	Cucurbita pepo (Zucchini)	cpelsiB500
Lsi03G013110	Wild cucumber (PI 183967)	cpilsiB184
Lsi03G013110	Melon (DHL92) v3.5.1	lsimeB260
Lsi03G013110	Melon (DHL92) v3.6.1	lsimedB273