Cp4.1LG03g07210 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g07210
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG03 : 3623842 .. 3624398 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAGAAGCTTCGTTTCGATTCAATGGCGTCGATGCTTCAAAAGCTCGTCAGAAAATCGCCACCAACAAGACTAATTGCTGCTTTGGGTACCCAGACCTCACAAAATCCCTTAAAACCCTACATTCTTCACCAGCCGCTTGATTTTGATAAGAAACCAGATCGGCATTGCGATTCTAATTTAANCAAGACTAATTGCTGCTTTGGGTACCCAGACCTCACAAAATCCCTTAAAACCCTACATTCTTCACCAGCCGCTTGATTTTGACAAGAAACCAGATCGGCATTGCGATTCTAATTTAAACTCTGTTTCTACTTCGAATCCATCTCACTTTTCCCTGTTTTACCCTAGTTTTCCATTTGGGTTTTGCTTGCCGCAAATCTCCTCATCTGGGATGCTTCCGTTCGAGCCCGATTTTGTTGAACAAGATGAATCTAGGAAATTGTGGGCTGATAGCGTGAAGAAGAAGAGGAAACGGAAGATGAACAAGCATAAATACAAGAAGCTTAGGAAGCGACNTAGCGTGAAGAAGAAGAGGAAACGGAAGATGAACAAGCAT

mRNA sequence

TCAGAAGCTTCGTTTCGATTCAATGGCGTCGATGCTTCAAAAGCTCGTCAGAAAATCGCCACCAACAAGACTAATTGCTGCTTTGGACTAATTGCTGCTTTGGGTACCCAGACCTCACAAAATCCCTTAAAACCCTACATTCTTCACCAGCCGCTTGATTTTGACAAGAAACCAGATCGGCATTGCGATTCTAATTTAAACTCTGTTTCTACTTCGAATCCATCTCACTTTTCCCTGTTTTACCCTAGTTTTCCATTTGGGTTTTGCTTGCCGCAAATCTCCTCATCTGGGATGCTTCCGTTCGAGCCCGATTTTGTTGAACAAGATGAATCTAGGAAATTGTGGGCTGATAGCGTGAAGAAGAAGAGGAAACGGAAGATGAACAAGCATAAATACAAGAAGCTTAGGAAGCGACNTAGCGTGAAGAAGAAGAGGAAACGGAAGATGAACAAGCAT

Coding sequence (CDS)

TCAGAAGCTTCGTTTCGATTCAATGGCGTCGATGCTTCAAAAGCTCGTCAGAAAATCGCCACCAACAAGACTAATTGCTGCTTTGGACTAATTGCTGCTTTGGGTACCCAGACCTCACAAAATCCCTTAAAACCCTACATTCTTCACCAGCCGCTTGATTTTGACAAGAAACCAGATCGGCATTGCGATTCTAATTTAAACTCTGTTTCTACTTCGAATCCATCTCACTTTTCCCTGTTTTACCCTAGTTTTCCATTTGGGTTTTGCTTGCCGCAAATCTCCTCATCTGGGATGCTTCCGTTCGAGCCCGATTTTGTTGAACAAGATGAATCTAGGAAATTGTGGGCTGATAGCGTGAAGAAGAAGAGGAAACGGAAGATGAACAAGCATAAATACAAGAAGCTTAGGAAGCGACNTAGCGTGAAGAAGAAGAGGAAACGGAAGATGAACAAGCAT

Protein sequence

SEASFRFNGVDASKARQKIATNKTNCCFGLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSNPSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDESRKLWADSVKKKRKRKMNKHKYKKLRKRXSVKKKRKRKMNKH

Homology

[Close]

BLAST of Cp4.1LG03g07210 vs. TrEMBL
Match: A0A0A0LDP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G592160 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.1e-45
Identity = 94/109 (86.24%), Postives = 99/109 (90.83%), Query Frame = 1


Query: 30  LIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSNPSHFSLFYPSFPFGFC 89
           LIAALG QTSQN   P+ILHQPLDFDKKPD HC SN+NS STSNPSHFS FYPSFPFG C
Sbjct: 17  LIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSNPSHFSQFYPSFPFGLC 76

Query: 90  LPQISSSGMLPFEPDFVEQDESRKLWADSVKKKRKRKMNKHKYKKLRKR 139
           LPQISS+G+LPFEPD VEQD+SRKLWADSVKKKRKRKMNKHKYKKLRKR
Sbjct: 77  LPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYKKLRKR 125

[Close]

BLAST of Cp4.1LG03g07210 vs. TrEMBL
Match: M5XB24_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012279mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 58/98 (59.18%), Postives = 66/98 (67.35%), Query Frame = 1


Query: 47  ILHQPLDFDKKPDRHCDSNLNSV----STSN--PSHFSLFYPSFPFGFCLPQISSSGMLP 106
           ILHQP      PD H   NL+ +     T N   S FS  +PSFPFG CL  ISSSG++ 
Sbjct: 74  ILHQPHIDQTNPDPHQFLNLSPLLIVPKTQNFGSSGFSHIFPSFPFGICLNPISSSGLVS 133

Query: 107 FEPDFVEQDESRKLWADSVKKKRKRKMNKHKYKKLRKR 139
            E   VE D+SRK+WADSVKKKRKRKMNKHKY+KLRKR
Sbjct: 134 SEAVEVEFDDSRKVWADSVKKKRKRKMNKHKYRKLRKR 171

[Close]

BLAST of Cp4.1LG03g07210 vs. TrEMBL
Match: A5C4N9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0137g00370 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.2e-15
Identity = 57/118 (48.31%), Postives = 75/118 (63.56%), Query Frame = 1


Query: 30  LIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLN----SVSTSNPSHFSLF--YPS 89
           ++  L    S N + P +LH+P   + K D   + NLN    S +T N +H+S F  YPS
Sbjct: 17  ILPCLNNGKSSNLVAPPLLHKPYPPETKSD--AEPNLNPCQGSSTTENHTHYSSFQIYPS 76

Query: 90  FPFGFCLPQISSSGM---LPFEPDFVEQDESRKLWADSVKKKRKRKMNKHKYKKLRKR 139
           FPFG+CL  I S  +    P + + V+ D+SR +WADSVKKKRK+KMNKHKYKKLRKR
Sbjct: 77  FPFGYCLNPIPSPVLEQSQPLKVEEVDSDDSRTIWADSVKKKRKKKMNKHKYKKLRKR 132

[Close]

BLAST of Cp4.1LG03g07210 vs. TrEMBL
Match: A5B1K2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022672 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.4e-15
Identity = 58/118 (49.15%), Postives = 75/118 (63.56%), Query Frame = 1


Query: 30  LIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLN----SVSTSNPSHFSLF--YPS 89
           ++  L    S N + P +LH+P   + K D   + NLN    S +T N +H+S F  YPS
Sbjct: 17  ILPCLNNGKSSNLVAPPLLHKPYLPETKFD--AEPNLNPCQGSSTTENHTHYSSFQIYPS 76

Query: 90  FPFGFCLPQISSSGMLPFEPDFVEQ---DESRKLWADSVKKKRKRKMNKHKYKKLRKR 139
           FPFG+CL  I S  +   +P  VE+   D+SR +WADSVKKKRK+KMNKHKYKKLRKR
Sbjct: 77  FPFGYCLNPIPSPVLEQSQPSKVEEVDSDDSRTIWADSVKKKRKKKMNKHKYKKLRKR 132

[Close]

BLAST of Cp4.1LG03g07210 vs. TrEMBL
Match: V4THM1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017789mg PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.8e-13
Identity = 59/116 (50.86%), Postives = 72/116 (62.07%), Query Frame = 1


Query: 30  LIAALGTQTSQN-PLKPYILHQPLDFDKKPDRHCDSNLNSV--STSNPSHF--SLFYPSF 89
           LI +L TQ S N    P +L+     D  PD H    L+S   +  N ++F  S FYPSF
Sbjct: 17  LIFSLHTQQSSNLTAPPLLLNHQAHIDTVPDHH-HHRLDSFPPTKENLTNFTSSFFYPSF 76

Query: 90  PFGFCLPQISSSGMLPFEPDFVEQDESRK--LWADSVKKKRKRKMNKHKYKKLRKR 139
           PFGF L  I S+G +  EPD V  D+  +  +WADSVKKKRK+KMNKHKYKKLRKR
Sbjct: 77  PFGFFLDPILSTGSILSEPDDVVSDDVLETVVWADSVKKKRKKKMNKHKYKKLRKR 131

[Close]

BLAST of Cp4.1LG03g07210 vs. TAIR10
Match: AT5G63150.1 (AT5G63150.1 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-07
Identity = 47/128 (36.72%), Postives = 65/128 (50.78%), Query Frame = 1


Query: 23  KTNCCFGLIAALGTQTSQNPLKPYILHQPLDFD---KKPDRHCDSNLNSVSTSNPSHFSL 82
           +   CF  I  L T  S    +    +   + D   +KPD    +N     + N S+  +
Sbjct: 10  RNKSCFNSIQRLTTTPSLFTYQKPYFNNNNNIDSVIEKPDPVSFTNPLITLSGNESNQPM 69

Query: 83  -FYPSFPFGFCL-PQISSSGMLPFEPDFVEQDESRK---LWADSVKKKRKRKMNKHKYKK 142
            FYPSF  G CL P++     L       E++E  K   ++ADSVKKKRK+KMNKHKY+K
Sbjct: 70  RFYPSFSMGLCLNPKMIQGLDLAETASLEEEEEDTKEIVIYADSVKKKRKKKMNKHKYRK 129

[Close]

BLAST of Cp4.1LG03g07210 vs. NCBI nr
Match: gi|778681739|ref|XP_011651574.1| (PREDICTED: uncharacterized protein LOC101220058 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 7.3e-45
Identity = 94/109 (86.24%), Postives = 99/109 (90.83%), Query Frame = 1


Query: 30  LIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSNPSHFSLFYPSFPFGFC 89
           LIAALG QTSQN   P+ILHQPLDFDKKPD HC SN+NS STSNPSHFS FYPSFPFG C
Sbjct: 17  LIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSNPSHFSQFYPSFPFGLC 76

Query: 90  LPQISSSGMLPFEPDFVEQDESRKLWADSVKKKRKRKMNKHKYKKLRKR 139
           LPQISS+G+LPFEPD VEQD+SRKLWADSVKKKRKRKMNKHKYKKLRKR
Sbjct: 77  LPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYKKLRKR 125

[Close]

BLAST of Cp4.1LG03g07210 vs. NCBI nr
Match: gi|659098254|ref|XP_008450047.1| (PREDICTED: uncharacterized protein LOC103491757 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 1.4e-43
Identity = 93/109 (85.32%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 30  LIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSNPSHFSLFYPSFPFGFC 89
           LIAALG QTSQN   P+ILHQPLDFDKK D H  SNLNS STSNPSHFS FYPSFPFG C
Sbjct: 17  LIAALGAQTSQNLSTPFILHQPLDFDKKSDAHSHSNLNSASTSNPSHFSQFYPSFPFGLC 76

Query: 90  LPQISSSGMLPFEPDFVEQDESRKLWADSVKKKRKRKMNKHKYKKLRKR 139
           LPQISS+G+LPFEPD+VEQD+SRKLWADSVKKKRKRKMNKHKYKKLRKR
Sbjct: 77  LPQISSTGLLPFEPDYVEQDDSRKLWADSVKKKRKRKMNKHKYKKLRKR 125

[Close]

BLAST of Cp4.1LG03g07210 vs. NCBI nr
Match: gi|595927035|ref|XP_007215061.1| (hypothetical protein PRUPE_ppa012279mg [Prunus persica])

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 58/98 (59.18%), Postives = 66/98 (67.35%), Query Frame = 1


Query: 47  ILHQPLDFDKKPDRHCDSNLNSV----STSN--PSHFSLFYPSFPFGFCLPQISSSGMLP 106
           ILHQP      PD H   NL+ +     T N   S FS  +PSFPFG CL  ISSSG++ 
Sbjct: 74  ILHQPHIDQTNPDPHQFLNLSPLLIVPKTQNFGSSGFSHIFPSFPFGICLNPISSSGLVS 133

Query: 107 FEPDFVEQDESRKLWADSVKKKRKRKMNKHKYKKLRKR 139
            E   VE D+SRK+WADSVKKKRKRKMNKHKY+KLRKR
Sbjct: 134 SEAVEVEFDDSRKVWADSVKKKRKRKMNKHKYRKLRKR 171

[Close]

BLAST of Cp4.1LG03g07210 vs. NCBI nr
Match: gi|731372733|ref|XP_010650803.1| (PREDICTED: uncharacterized protein LOC104879512 [Vitis vinifera])

HSP 1 Score: 89.7 bits (221), Expect = 4.6e-15
Identity = 57/118 (48.31%), Postives = 75/118 (63.56%), Query Frame = 1


Query: 30  LIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLN----SVSTSNPSHFSLF--YPS 89
           ++  L    S N + P +LH+P   + K D   + NLN    S +T N +H+S F  YPS
Sbjct: 17  ILPCLNNGKSSNLVAPPLLHKPYPPETKSD--AEPNLNPCQGSSTTENHTHYSSFQIYPS 76

Query: 90  FPFGFCLPQISSSGM---LPFEPDFVEQDESRKLWADSVKKKRKRKMNKHKYKKLRKR 139
           FPFG+CL  I S  +    P + + V+ D+SR +WADSVKKKRK+KMNKHKYKKLRKR
Sbjct: 77  FPFGYCLNPIPSPVLEQSQPLKVEEVDSDDSRTIWADSVKKKRKKKMNKHKYKKLRKR 132

[Close]

BLAST of Cp4.1LG03g07210 vs. NCBI nr
Match: gi|147788256|emb|CAN67397.1| (hypothetical protein VITISV_022672 [Vitis vinifera])

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 58/118 (49.15%), Postives = 75/118 (63.56%), Query Frame = 1


Query: 30  LIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLN----SVSTSNPSHFSLF--YPS 89
           ++  L    S N + P +LH+P   + K D   + NLN    S +T N +H+S F  YPS
Sbjct: 17  ILPCLNNGKSSNLVAPPLLHKPYLPETKFD--AEPNLNPCQGSSTTENHTHYSSFQIYPS 76

Query: 90  FPFGFCLPQISSSGMLPFEPDFVEQ---DESRKLWADSVKKKRKRKMNKHKYKKLRKR 139
           FPFG+CL  I S  +   +P  VE+   D+SR +WADSVKKKRK+KMNKHKYKKLRKR
Sbjct: 77  FPFGYCLNPIPSPVLEQSQPSKVEEVDSDDSRTIWADSVKKKRKKKMNKHKYKKLRKR 132

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g07210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g07210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDP0_CUCSA	5.1e-45	86.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G592160 PE=4 SV=1	[more]
M5XB24_PRUPE	1.5e-15	59.18	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012279mg PE=4 SV=1	[more]
A5C4N9_VITVI	3.2e-15	48.31	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0137g00370 PE=4 SV=...	[more]
A5B1K2_VITVI	9.4e-15	49.15	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022672 PE=4 SV=1	[more]
V4THM1_9ROSI	8.8e-13	50.86	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017789mg PE=4 SV=1	[more]

BLAST of Cp4.1LG03g07210 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63150.1	2.9e-07	36.72	unknown protein	[more]

BLAST of Cp4.1LG03g07210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778681739\|ref\|XP_011651574.1\|	7.3e-45	86.24	PREDICTED: uncharacterized protein LOC101220058 [Cucumis sativus]	[more]
gi\|659098254\|ref\|XP_008450047.1\|	1.4e-43	85.32	PREDICTED: uncharacterized protein LOC103491757 [Cucumis melo]	[more]
gi\|595927035\|ref\|XP_007215061.1\|	2.1e-15	59.18	hypothetical protein PRUPE_ppa012279mg [Prunus persica]	[more]
gi\|731372733\|ref\|XP_010650803.1\|	4.6e-15	48.31	PREDICTED: uncharacterized protein LOC104879512 [Vitis vinifera]	[more]
gi\|147788256\|emb\|CAN67397.1\|	1.3e-14	49.15	hypothetical protein VITISV_022672 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013177	DUF1713

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g07210.1	Cp4.1LG03g07210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013177	Domain of unknown function DUF1713	PFAM	PF08213	DUF1713	coord: 116..138 score: 6.
IPR013177	Domain of unknown function DUF1713	SMART	SM01155	DUF1713_2	coord: 115..148 score: 5.
None	No IPR available	PANTHER	PTHR32035	FAMILY NOT NAMED	coord: 65..149 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g07210	Cucsa.156290	Cucumber (Gy14) v1	cgycpeB0415
Cp4.1LG03g07210	CmaCh11G014750	Cucurbita maxima (Rimu)	cmacpeB145
Cp4.1LG03g07210	CmaCh14G006930	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g07210	CmoCh14G007090	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g07210	Csa3G592160	Cucumber (Chinese Long) v2	cpecuB610
Cp4.1LG03g07210	MELO3C014838	Melon (DHL92) v3.5.1	cpemeB582
Cp4.1LG03g07210	ClCG05G013140	Watermelon (Charleston Gray)	cpewcgB555
Cp4.1LG03g07210	CSPI03G25870	Wild cucumber (PI 183967)	cpecpiB608
Cp4.1LG03g07210	Lsi05G004830	Bottle gourd (USVL1VR-Ls)	cpelsiB509
Cp4.1LG03g07210	MELO3C014838.2	Melon (DHL92) v3.6.1	cpemedB695
Cp4.1LG03g07210	CsaV3_3G027400	Cucumber (Chinese Long) v3	cpecucB0760
Cp4.1LG03g07210	Bhi01G001578	Wax gourd	cpewgoB0772
Cp4.1LG03g07210	CsGy3G024250	Cucumber (Gy14) v2	cgybcpeB407
Cp4.1LG03g07210	Carg09686	Silver-seed gourd	carcpeB0613
Cp4.1LG03g07210	Carg15587	Silver-seed gourd	carcpeB0518

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g07210	Cp4.1LG04g05840	Cucurbita pepo (Zucchini)	cpecpeB477

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g07210	Cucurbita pepo (Zucchini)	cpecpeB358
Cp4.1LG03g07210	Cucurbita moschata (Rifu)	cmocpeB124
Cp4.1LG03g07210	Cucurbita moschata (Rifu)	cmocpeB125
Cp4.1LG03g07210	Wild cucumber (PI 183967)	cpecpiB612
Cp4.1LG03g07210	Watermelon (Charleston Gray)	cpewcgB563
Cp4.1LG03g07210	Melon (DHL92) v3.5.1	cpemeB564
Cp4.1LG03g07210	Cucumber (Gy14) v2	cgybcpeB106
Cp4.1LG03g07210	Melon (DHL92) v3.6.1	cpemedB669
Cp4.1LG03g07210	Cucumber (Chinese Long) v3	cpecucB0739