Carg09686 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09686
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DUF1713 domain protein
Location	Cucurbita_argyrosperma_scaffold_023 : 337661 .. 338053 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGATGCTTCAAAAGCTCGTCAGAAAATCGCCACCAACAAGACTAATTGCTGCTTTGGGTACCCAGACCTCACAAAATCCCTTAAAACCCTACATTCTTCACCAGCCGCTTGATTTTGATAAGAAACCAGATCGGCATTGCGATTCTAATTTGAACTCTGTTTCTACTTCGAATCCATCTCACTTTTCCCTGTTTTACCCTAGTTTTCCATTTGGGTTTTGCTTGCCGCAAATCTCCTCATCTGGGATGCTTCCGTTCGAGCCCGATTTTGTTGAACAAGATGATTCTAGGAAATTGTGGGCTGATAGCGTGAAGAAGAAGAGGAAACGGAAGATGAACAAGCATAAGTACAAGAAGCTTAGGAAGCGACTCCGAAGACAGACTTAG

mRNA sequence

ATGGCGTCGATGCTTCAAAAGCTCGTCAGAAAATCGCCACCAACAAGACTAATTGCTGCTTTGGGTACCCAGACCTCACAAAATCCCTTAAAACCCTACATTCTTCACCAGCCGCTTGATTTTGATAAGAAACCAGATCGGCATTGCGATTCTAATTTGAACTCTGTTTCTACTTCGAATCCATCTCACTTTTCCCTGTTTTACCCTAGTTTTCCATTTGGGTTTTGCTTGCCGCAAATCTCCTCATCTGGGATGCTTCCGTTCGAGCCCGATTTTGTTGAACAAGATGATTCTAGGAAATTGTGGGCTGATAGCGTGAAGAAGAAGAGGAAACGGAAGATGAACAAGCATAAGTACAAGAAGCTTAGGAAGCGACTCCGAAGACAGACTTAG

Coding sequence (CDS)

ATGGCGTCGATGCTTCAAAAGCTCGTCAGAAAATCGCCACCAACAAGACTAATTGCTGCTTTGGGTACCCAGACCTCACAAAATCCCTTAAAACCCTACATTCTTCACCAGCCGCTTGATTTTGATAAGAAACCAGATCGGCATTGCGATTCTAATTTGAACTCTGTTTCTACTTCGAATCCATCTCACTTTTCCCTGTTTTACCCTAGTTTTCCATTTGGGTTTTGCTTGCCGCAAATCTCCTCATCTGGGATGCTTCCGTTCGAGCCCGATTTTGTTGAACAAGATGATTCTAGGAAATTGTGGGCTGATAGCGTGAAGAAGAAGAGGAAACGGAAGATGAACAAGCATAAGTACAAGAAGCTTAGGAAGCGACTCCGAAGACAGACTTAG

Protein sequence

MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSNPSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYKKLRKRLRRQT

Homology

[Close]

BLAST of Carg09686 vs. NCBI nr
Match: XP_022934588.1 (uncharacterized protein LOC111441723 [Cucurbita moschata])

HSP 1 Score: 224.9 bits (572), Expect = 1.5e-55
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN
Sbjct: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKXXXXXXXXXXXX 120
           PSHFSLFYPSFPFGFCLPQISSSGMLPFEP+FVEQDDSRKLWADSVKKXXXXXXXXXXXX
Sbjct: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPEFVEQDDSRKLWADSVKKXXXXXXXXXXXX 120

Query: 121 XXXXXLRRQT 131
           XXXXXLRRQT
Sbjct: 121 XXXXXLRRQT 130

[Close]

BLAST of Carg09686 vs. NCBI nr
Match: XP_023526336.1 (uncharacterized protein LOC111789858 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.9 bits (572), Expect = 1.5e-55
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN
Sbjct: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKXXXXXXXXXXXX 120
           PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQD+SRKLWADSVKKXXXXXXXXXXXX
Sbjct: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDESRKLWADSVKKXXXXXXXXXXXX 120

Query: 121 XXXXXLRRQT 131
           XXXXXLRRQT
Sbjct: 121 XXXXXLRRQT 130

[Close]

BLAST of Carg09686 vs. NCBI nr
Match: XP_022984015.1 (uncharacterized protein LOC111482461 [Cucurbita maxima])

HSP 1 Score: 215.7 bits (548), Expect = 9.3e-53
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MASMLQKLVRKS PTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTS+
Sbjct: 1   MASMLQKLVRKSSPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSD 60

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKXXXXXXXXXXXX 120
            SHF LFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKXXXXXXXXXXXX
Sbjct: 61  LSHFPLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKXXXXXXXXXXXX 120

Query: 121 XXXXXLRRQT 131
           XXXXXLRRQT
Sbjct: 121 XXXXXLRRQT 130

[Close]

BLAST of Carg09686 vs. NCBI nr
Match: XP_011651574.1 (PREDICTED: uncharacterized protein LOC101220058 [Cucumis sativus] >KGN58211.1 hypothetical protein Csa_3G592160 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 1.7e-46
Identity = 114/130 (87.69%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MASMLQ L+RKSPPTRLIAALG QTSQN   P+ILHQPLDFDKKPD HC SN+NS STSN
Sbjct: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKXXXXXXXXXXXX 120
           PSHFS FYPSFPFG CLPQISS+G+LPFEPD VEQDDSRKLWADSVKKXXXXXXXXXXXX
Sbjct: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKXXXXXXXXXXXX 120

Query: 121 XXXXXLRRQT 131
           XXXXXLRRQT
Sbjct: 121 XXXXXLRRQT 130

[Close]

BLAST of Carg09686 vs. NCBI nr
Match: XP_023530210.1 (uncharacterized protein LOC111792842 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 108/130 (83.08%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MAS+LQKL+RKSPPTR IAALG+QTSQN   PYILHQPLD D+KPD HCDSNLNSVSTSN
Sbjct: 1   MASILQKLIRKSPPTRTIAALGSQTSQNLSLPYILHQPLDIDRKPDGHCDSNLNSVSTSN 60

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKXXXXXXXXXXXX 120
           PS FSLF+PSFPFG CL QI S+G + FEPD+VE+DD RKLWADSVKKXXXXXXXXXXXX
Sbjct: 61  PSQFSLFFPSFPFGLCLQQIPSTGSIRFEPDYVEEDDCRKLWADSVKKXXXXXXXXXXXX 120

Query: 121 XXXXXLRRQT 131
           XXXXXLRRQT
Sbjct: 121 XXXXXLRRQT 130

[Close]

BLAST of Carg09686 vs. TrEMBL
Match: tr|A0A0A0LDP0|A0A0A0LDP0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592160 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.1e-46
Identity = 114/130 (87.69%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MASMLQ L+RKSPPTRLIAALG QTSQN   P+ILHQPLDFDKKPD HC SN+NS STSN
Sbjct: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKXXXXXXXXXXXX 120
           PSHFS FYPSFPFG CLPQISS+G+LPFEPD VEQDDSRKLWADSVKKXXXXXXXXXXXX
Sbjct: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKXXXXXXXXXXXX 120

Query: 121 XXXXXLRRQT 131
           XXXXXLRRQT
Sbjct: 121 XXXXXLRRQT 130

[Close]

BLAST of Carg09686 vs. TrEMBL
Match: tr|A0A2N9F6Q7|A0A2N9F6Q7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10724 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 71/132 (53.79%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MAS LQKL+RKSP TR++AAL    + NP  P I HQP   + KP       L S     
Sbjct: 1   MASTLQKLLRKSPATRIVAALQNPQASNPTSPLIFHQPHLIEPKPG---SPFLGSPKAEI 60

Query: 61  PSH--FSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKXXXXXXXXXX 120
            +H  FS  YPSFPFGF L  I S+G +P E +    DDSR +WADSVKK XXXXXXXXX
Sbjct: 61  LTHFQFSQIYPSFPFGFFLNPICSTGSVPSEAEDAALDDSRTVWADSVKKKXXXXXXXXX 120

Query: 121 XXXXXXXLRRQT 131
           XX     LRRQT
Sbjct: 121 XXKLRRRLRRQT 129

[Close]

BLAST of Carg09686 vs. TrEMBL
Match: tr|A0A2P5BCE5|A0A2P5BCE5_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_325960 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.7e-15
Identity = 61/136 (44.85%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSN------LN 60
           MAS +QK++RKSPP R+   L  +   N   P    QP   + KPD     N      L 
Sbjct: 1   MASTIQKILRKSPPPRIFTDLYPKRVPNLNVPLTFQQPHCNEIKPDPFLGHNPIQIPFLG 60

Query: 61  SVSTSNPSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKXXXXXX 120
           +  T N S FS  YPSFPFGFCL  +  SG +P E   V  DDS K+WADSVKK  XXXX
Sbjct: 61  ARETDNLSPFSHIYPSFPFGFCLNPLPLSGSIPSEAGDVSMDDSTKVWADSVKKKRXXXX 120

Query: 121 XXXXXXXXXXXLRRQT 131
                      LRRQT
Sbjct: 121 NKHKYQKLRKRLRRQT 136

[Close]

BLAST of Carg09686 vs. TrEMBL
Match: tr|M5XB24|M5XB24_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa012279mg PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.7e-15
Identity = 75/136 (55.15%), Postives = 89/136 (65.44%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSV---- 60
           MAS +Q+++R+S PTR+I AL    + N     ILHQP      PD H   NL+ +    
Sbjct: 45  MASTIQRVLRRSQPTRIIDALHNPAASN----LILHQPHIDQTNPDPHQFLNLSPLLIVP 104

Query: 61  STSN--PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKXXXXXX 120
            T N   S FS  +PSFPFG CL  ISSSG++  E   VE DDSRK+WADSVKKXXXXXX
Sbjct: 105 KTQNFGSSGFSHIFPSFPFGICLNPISSSGLVSSEAVEVEFDDSRKVWADSVKKXXXXXX 164

Query: 121 XXXXXXXXXXXLRRQT 131
           XXXXXXXXX  L+RQT
Sbjct: 165 XXXXXXXXXKRLQRQT 176

[Close]

BLAST of Carg09686 vs. TrEMBL
Match: tr|A0A251Q7M0|A0A251Q7M0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G296000 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.7e-15
Identity = 75/136 (55.15%), Postives = 89/136 (65.44%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSV---- 60
           MAS +Q+++R+S PTR+I AL    + N     ILHQP      PD H   NL+ +    
Sbjct: 1   MASTIQRVLRRSQPTRIIDALHNPAASN----LILHQPHIDQTNPDPHQFLNLSPLLIVP 60

Query: 61  STSN--PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKXXXXXX 120
            T N   S FS  +PSFPFG CL  ISSSG++  E   VE DDSRK+WADSVKKXXXXXX
Sbjct: 61  KTQNFGSSGFSHIFPSFPFGICLNPISSSGLVSSEAVEVEFDDSRKVWADSVKKXXXXXX 120

Query: 121 XXXXXXXXXXXLRRQT 131
           XXXXXXXXX  L+RQT
Sbjct: 121 XXXXXXXXXKRLQRQT 132

The following BLAST results are available for this feature:

BLAST of Carg09686 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934588.1	1.5e-55	99.23	uncharacterized protein LOC111441723 [Cucurbita moschata]	[more]
XP_023526336.1	1.5e-55	99.23	uncharacterized protein LOC111789858 [Cucurbita pepo subsp. pepo]	[more]
XP_022984015.1	9.3e-53	96.92	uncharacterized protein LOC111482461 [Cucurbita maxima]	[more]
XP_011651574.1	1.7e-46	87.69	PREDICTED: uncharacterized protein LOC101220058 [Cucumis sativus] >KGN58211.1 hy...	[more]
XP_023530210.1	1.1e-42	83.08	uncharacterized protein LOC111792842 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg09686 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg09686 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg09686 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LDP0\|A0A0A0LDP0_CUCSA	1.1e-46	87.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592160 PE=4 SV=1	[more]
tr\|A0A2N9F6Q7\|A0A2N9F6Q7_FAGSY	1.2e-16	53.79	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10724 PE=4 SV=1	[more]
tr\|A0A2P5BCE5\|A0A2P5BCE5_9ROSA	8.7e-15	44.85	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_325960 PE=4 S...	[more]
tr\|M5XB24\|M5XB24_PRUPE	8.7e-15	55.15	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa012279mg PE=4 SV=1	[more]
tr\|A0A251Q7M0\|A0A251Q7M0_PRUPE	8.7e-15	55.15	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G296000 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013177	DUF1713

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09686-RA	Carg09686-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013177	Domain of unknown function DUF1713	SMART	SM01155	DUF1713_2	coord: 102..129 e-value: 3.3E-7 score: 39.9
IPR013177	Domain of unknown function DUF1713	PFAM	PF08213	DUF1713	coord: 103..128 e-value: 1.8E-9 score: 37.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..130
None	No IPR available	PANTHER	PTHR32035	FAMILY NOT NAMED	coord: 1..130
None	No IPR available	PANTHER	PTHR32035:SF5	SUBFAMILY NOT NAMED	coord: 1..130

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09686	Csa3G592160	Cucumber (Chinese Long) v2	carcuB0466
Carg09686	MELO3C014838	Melon (DHL92) v3.5.1	carmeB0444
Carg09686	ClCG05G013140	Watermelon (Charleston Gray)	carwcgB0428
Carg09686	CSPI03G25870	Wild cucumber (PI 183967)	carcpiB0471
Carg09686	Cucsa.156290	Cucumber (Gy14) v1	carcgyB0503
Carg09686	CmaCh14G006930	Cucurbita maxima (Rimu)	carcmaB0607
Carg09686	CmaCh11G014750	Cucurbita maxima (Rimu)	carcmaB0605
Carg09686	CmoCh14G007090	Cucurbita moschata (Rifu)	carcmoB0592
Carg09686	Lsi05G004830	Bottle gourd (USVL1VR-Ls)	carlsiB396
Carg09686	Cp4.1LG04g05840	Cucurbita pepo (Zucchini)	carcpeB0614
Carg09686	Cp4.1LG03g07210	Cucurbita pepo (Zucchini)	carcpeB0613
Carg09686	CsGy3G024250	Cucumber (Gy14) v2	carcgybB0443
Carg09686	MELO3C014838.2	Melon (DHL92) v3.6.1	carmedB0446
Carg09686	CsaV3_3G027400	Cucumber (Chinese Long) v3	carcucB0467
Carg09686	Cla97C05G094710	Watermelon (97103) v2	carwmbB0459
Carg09686	Bhi01G001578	Wax gourd	carwgoB0526

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09686	Carg15587	Silver-seed gourd	carcarB397

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09686	Silver-seed gourd	carcarB388
Carg09686	Silver-seed gourd	carcarB446
Carg09686	Cucumber (Gy14) v2	carcgybB0442
Carg09686	Cucurbita maxima (Rimu)	carcmaB0603
Carg09686	Cucurbita maxima (Rimu)	carcmaB0604
Carg09686	Cucurbita moschata (Rifu)	carcmoB0588
Carg09686	Cucurbita moschata (Rifu)	carcmoB0589
Carg09686	Cucurbita moschata (Rifu)	carcmoB0590
Carg09686	Cucurbita pepo (Zucchini)	carcpeB0610
Carg09686	Cucumber (Chinese Long) v3	carcucB0466
Carg09686	Bottle gourd (USVL1VR-Ls)	carlsiB397
Carg09686	Melon (DHL92) v3.5.1	carmeB0442
Carg09686	Watermelon (Charleston Gray)	carwcgB0430
Carg09686	Watermelon (97103) v1	carwmB0437
Carg09686	Watermelon (97103) v2	carwmbB0460