Cp4.1LG03g04480 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g04480
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	arabinogalactan protein 23
Location	Cp4.1LG03 : 5519143 .. 5519328 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGACGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGTGCCGCTGCCGGCCTTCCAGCAATCGGCTCTGTCATTGGCGCTTCGTTGCTCTCTGTCGCGGCCTACTACCTGCAATGA

mRNA sequence

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGACGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGTGCCGCTGCCGGCCTTCCAGCAATCGGCTCTGTCATTGGCGCTTCGTTGCTCTCTGTCGCGGCCTACTACCTGCAATGA

Coding sequence (CDS)

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGACGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGTGCCGCTGCCGGCCTTCCAGCAATCGGCTCTGTCATTGGCGCTTCGTTGCTCTCTGTCGCGGCCTACTACCTGCAATGA

Protein sequence

MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ

Homology

[Close]

BLAST of Cp4.1LG03g04480 vs. Swiss-Prot
Match: AGP23_ARATH (Arabinogalactan peptide 23 OS=Arabidopsis thaliana GN=AGP23 PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-12
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 1


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++AV+A +E  APAPGP+S A+A LPA+GS++GASL+S+ +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of Cp4.1LG03g04480 vs. TrEMBL
Match: A0A0A0L9U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697910 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.5e-16
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACAVLFAAATV+AVVA DEALAPAPGPSSGA  G+PAIGS++GASLLS AAYYL
Sbjct: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60

[Close]

BLAST of Cp4.1LG03g04480 vs. TrEMBL
Match: W9SPR6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000818 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-11
Identity = 41/60 (68.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACAV+FAAA+VSAV+A+D   APAP P+ G +A LPA+GS++GASL+S  AYYL
Sbjct: 1  MEMKKIACAVIFAAASVSAVMANDAVAAPAPAPTGGTSASLPALGSLVGASLVSFVAYYL 60

[Close]

BLAST of Cp4.1LG03g04480 vs. TrEMBL
Match: A0A059DIY4_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A02403 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-11
Identity = 41/61 (67.21%), Postives = 53/61 (86.89%), Query Frame = 1


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          M+MKKI+CAVL AAA++SAV+A D++ APAPGPSSGA+A LP  GS++GAS++S  AYYL
Sbjct: 34 MDMKKISCAVLVAAASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYYL 93

Query: 61 Q 62
          Q
Sbjct: 94 Q 94

[Close]

BLAST of Cp4.1LG03g04480 vs. TrEMBL
Match: A0A0D3DU11_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.6e-11
Identity = 41/60 (68.33%), Postives = 54/60 (90.00%), Query Frame = 1


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++AV+A +EA APAPGP+S A+A LPA+GS+IGASL+S+ +YY+
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAVEEAGAPAPGPASAASAALPALGSLIGASLVSLFSYYM 60

[Close]

BLAST of Cp4.1LG03g04480 vs. TrEMBL
Match: A0A078CAG3_BRANA (BnaC08g28710D protein OS=Brassica napus GN=BnaC08g28710D PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.6e-11
Identity = 41/60 (68.33%), Postives = 54/60 (90.00%), Query Frame = 1


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++AV+A +EA APAPGP+S A+A LPA+GS+IGASL+S+ +YY+
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAVEEAGAPAPGPASAASAALPALGSLIGASLVSLFSYYM 60

[Close]

BLAST of Cp4.1LG03g04480 vs. TAIR10
Match: AT3G57690.1 (AT3G57690.1 arabinogalactan protein 23)

HSP 1 Score: 72.8 bits (177), Expect = 8.3e-14
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 1


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++AV+A +E  APAPGP+S A+A LPA+GS++GASL+S+ +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of Cp4.1LG03g04480 vs. TAIR10
Match: AT2G41905.1 (AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1))

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-10
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 1


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPS-SGAAAGLPAIGSVIGASLLSVAAYY 60
          MEMKKIAC V+FAAA+++AV+A  E  APAPGP+ SGA+  +PA+GS++GASL+S+ AYY
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAA-EVGAPAPGPAASGASVAVPALGSLVGASLVSLFAYY 60

[Close]

BLAST of Cp4.1LG03g04480 vs. NCBI nr
Match: gi|700203465|gb|KGN58598.1| (hypothetical protein Csa_3G697910 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-16
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACAVLFAAATV+AVVA DEALAPAPGPSSGA  G+PAIGS++GASLLS AAYYL
Sbjct: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60

[Close]

BLAST of Cp4.1LG03g04480 vs. NCBI nr
Match: gi|703130749|ref|XP_010104709.1| (hypothetical protein L484_000818 [Morus notabilis])

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-11
Identity = 41/60 (68.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACAV+FAAA+VSAV+A+D   APAP P+ G +A LPA+GS++GASL+S  AYYL
Sbjct: 1  MEMKKIACAVIFAAASVSAVMANDAVAAPAPAPTGGTSASLPALGSLVGASLVSFVAYYL 60

[Close]

BLAST of Cp4.1LG03g04480 vs. NCBI nr
Match: gi|629125825|gb|KCW90250.1| (hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis])

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-11
Identity = 41/61 (67.21%), Postives = 53/61 (86.89%), Query Frame = 1


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          M+MKKI+CAVL AAA++SAV+A D++ APAPGPSSGA+A LP  GS++GAS++S  AYYL
Sbjct: 34 MDMKKISCAVLVAAASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYYL 93

Query: 61 Q 62
          Q
Sbjct: 94 Q 94

[Close]

BLAST of Cp4.1LG03g04480 vs. NCBI nr
Match: gi|674961597|emb|CDX72003.1| (BnaC08g28710D [Brassica napus])

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-10
Identity = 41/60 (68.33%), Postives = 54/60 (90.00%), Query Frame = 1


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++AV+A +EA APAPGP+S A+A LPA+GS+IGASL+S+ +YY+
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAVEEAGAPAPGPASAASAALPALGSLIGASLVSLFSYYM 60

[Close]

BLAST of Cp4.1LG03g04480 vs. NCBI nr
Match: gi|224106059|ref|XP_002314029.1| (hypothetical protein POPTR_0009s06810g [Populus trichocarpa])

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-10
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACA+LFAAA+VSAV+A DE  APAP P+SGA+A LP +GS++GASL S  A YL
Sbjct: 1  MEMKKIACAILFAAASVSAVMA-DEVAAPAPSPASGASASLPIVGSLVGASLASFIALYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 60

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g04480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGP23_ARATH	1.5e-12	66.67	Arabinogalactan peptide 23 OS=Arabidopsis thaliana GN=AGP23 PE=2 SV=2	[more]

BLAST of Cp4.1LG03g04480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9U8_CUCSA	4.5e-16	86.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697910 PE=4 SV=1	[more]
W9SPR6_9ROSA	2.5e-11	68.33	Uncharacterized protein OS=Morus notabilis GN=L484_000818 PE=4 SV=1	[more]
A0A059DIY4_EUCGR	4.3e-11	67.21	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A02403 PE=4 ...	[more]
A0A0D3DU11_BRAOL	9.6e-11	68.33	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A078CAG3_BRANA	9.6e-11	68.33	BnaC08g28710D protein OS=Brassica napus GN=BnaC08g28710D PE=4 SV=1	[more]

BLAST of Cp4.1LG03g04480 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57690.1	8.3e-14	66.67	arabinogalactan protein 23	[more]
AT2G41905.1	1.1e-10	63.93	BEST Arabidopsis thaliana protein match is: arabinogalactan protein ...	[more]

BLAST of Cp4.1LG03g04480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203465\|gb\|KGN58598.1\|	6.4e-16	86.67	hypothetical protein Csa_3G697910 [Cucumis sativus]	[more]
gi\|703130749\|ref\|XP_010104709.1\|	3.6e-11	68.33	hypothetical protein L484_000818 [Morus notabilis]	[more]
gi\|629125825\|gb\|KCW90250.1\|	6.2e-11	67.21	hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]	[more]
gi\|674961597\|emb\|CDX72003.1\|	1.4e-10	68.33	BnaC08g28710D [Brassica napus]	[more]
gi\|224106059\|ref\|XP_002314029.1\|	2.4e-10	70.49	hypothetical protein POPTR_0009s06810g [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g04480.1	Cp4.1LG03g04480.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g04480	CmoCh14G010270	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g04480	Cla017262	Watermelon (97103) v1	cpewmB595
Cp4.1LG03g04480	ClCG10G012450	Watermelon (Charleston Gray)	cpewcgB544
Cp4.1LG03g04480	CsaV3_3G032220	Cucumber (Chinese Long) v3	cpecucB0748
Cp4.1LG03g04480	Bhi11G001187	Wax gourd	cpewgoB0742
Cp4.1LG03g04480	Carg07320	Silver-seed gourd	carcpeB1073
Cp4.1LG03g04480	Carg11226	Silver-seed gourd	carcpeB1147

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g04480	Cp4.1LG02g15560	Cucurbita pepo (Zucchini)	cpecpeB449

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g04480	Cucurbita pepo (Zucchini)	cpecpeB185
Cp4.1LG03g04480	Cucurbita pepo (Zucchini)	cpecpeB336
Cp4.1LG03g04480	Cucumber (Gy14) v1	cgycpeB0550
Cp4.1LG03g04480	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g04480	Cucurbita maxima (Rimu)	cmacpeB404
Cp4.1LG03g04480	Cucurbita maxima (Rimu)	cmacpeB494
Cp4.1LG03g04480	Cucurbita maxima (Rimu)	cmacpeB927
Cp4.1LG03g04480	Cucurbita moschata (Rifu)	cmocpeB367
Cp4.1LG03g04480	Cucurbita moschata (Rifu)	cmocpeB453
Cp4.1LG03g04480	Cucurbita moschata (Rifu)	cmocpeB861
Cp4.1LG03g04480	Wild cucumber (PI 183967)	cpecpiB601
Cp4.1LG03g04480	Wild cucumber (PI 183967)	cpecpiB637
Cp4.1LG03g04480	Cucumber (Chinese Long) v2	cpecuB599
Cp4.1LG03g04480	Cucumber (Chinese Long) v2	cpecuB633
Cp4.1LG03g04480	Bottle gourd (USVL1VR-Ls)	cpelsiB494
Cp4.1LG03g04480	Bottle gourd (USVL1VR-Ls)	cpelsiB500
Cp4.1LG03g04480	Melon (DHL92) v3.5.1	cpemeB559
Cp4.1LG03g04480	Melon (DHL92) v3.5.1	cpemeB566
Cp4.1LG03g04480	Cucumber (Gy14) v2	cgybcpeB396
Cp4.1LG03g04480	Cucumber (Gy14) v2	cgybcpeB957
Cp4.1LG03g04480	Melon (DHL92) v3.6.1	cpemedB665
Cp4.1LG03g04480	Melon (DHL92) v3.6.1	cpemedB673
Cp4.1LG03g04480	Silver-seed gourd	carcpeB0634
Cp4.1LG03g04480	Cucumber (Chinese Long) v3	cpecucB0789
Cp4.1LG03g04480	Wax gourd	cpewgoB0822