Carg07320 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07320
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	arabinogalactan protein 23
Location	Cucurbita_argyrosperma_scaffold_019 : 119043 .. 119228 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGAAGAAGATCAACTGCGCCATTCTCTTCGCTGCCGCAACGGTCAGCGCCGTCGTTGCTCATGATGAGGCAGCGGCTCCAGCACCTGGACCAACCAGCGGCGCCACCGCCGGCCTTCCGGCAATCAGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCGGCCTACTACTTCCAGTGA

mRNA sequence

ATGGAGATGAAGAAGATCAACTGCGCCATTCTCTTCGCTGCCGCAACGGTCAGCGCCGTCGTTGCTCATGATGAGGCAGCGGCTCCAGCACCTGGACCAACCAGCGGCGCCACCGCCGGCCTTCCGGCAATCAGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCGGCCTACTACTTCCAGTGA

Coding sequence (CDS)

ATGGAGATGAAGAAGATCAACTGCGCCATTCTCTTCGCTGCCGCAACGGTCAGCGCCGTCGTTGCTCATGATGAGGCAGCGGCTCCAGCACCTGGACCAACCAGCGGCGCCACCGCCGGCCTTCCGGCAATCAGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCGGCCTACTACTTCCAGTGA

Protein sequence

MEMKKINCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAISSLIGASLLSVAAYYFQ

Homology

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BLAST of Carg07320 vs. NCBI nr
Match: XP_022998512.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 49/61 (80.33%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MEMKKINCAILFAAATVSAVVAHDEAAAPAPXXXXXXXXGLPAISSLIGASLLSVAAYYF 60
          MEM KI CAILFAAATVSAVVAHDEAAAPAP        GLPAI SLIGASLLSVAAYY 
Sbjct: 1  MEMNKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATVGLPAIGSLIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

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BLAST of Carg07320 vs. NCBI nr
Match: XP_022932375.1 (arabinogalactan peptide 23-like [Cucurbita moschata] >XP_022965239.1 arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-12
Identity = 44/61 (72.13%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  MEMKKINCAILFAAATVSAVVAHDEAAAPAPXXXXXXXXGLPAISSLIGASLLSVAAYYF 60
          MEMKKI CA+LFAAATV+A VA +EA+APAP        GLPAI SLIGASLLSVAAYY 
Sbjct: 1  MEMKKITCAVLFAAATVTAAVAQNEASAPAPGPTSAATVGLPAIGSLIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

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BLAST of Carg07320 vs. NCBI nr
Match: XP_010104709.1 (arabinogalactan peptide 23 [Morus notabilis] >EXC48805.1 hypothetical protein L484_000818 [Morus notabilis])

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1  MEMKKINCAILFAAATVSAVVAHDEAAAPAPXXXXXXXXGLPAISSLIGASLLSVAAYY 60
          MEMKKI CA++FAAA+VSAV+A+D  AAPAP         LPA+ SL+GASL+S  AYY
Sbjct: 1  MEMKKIACAVIFAAASVSAVMANDAVAAPAPAPTGGTSASLPALGSLVGASLVSFVAYY 59

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BLAST of Carg07320 vs. NCBI nr
Match: XP_022933008.1 (arabinogalactan peptide 23-like [Cucurbita moschata])

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1  MEMKKINCAILFAAATVSAVVAHDEAAAP--APXXXXXXXXGLPAISSLIGASLLSVAAY 60
          MEMKKI CA LFAAATV+AVVA DE+ +P  AP         LPA+ SL+GASL+S+ AY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

[Close]

BLAST of Carg07320 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 1  MEMKKINCAILFAAATVSAVVAHDEAAAP--APXXXXXXXXGLPAISSLIGASLLSVAAY 60
          MEMKKI CA LFAAATV+AVVA DE+ +P  AP         LPA+ SL+GASL+S  AY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

[Close]

BLAST of Carg07320 vs. TAIR10
Match: AT3G57690.1 (arabinogalactan protein 23)

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-10
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1  MEMKKINCAILFAAATVSAVVAHDEAAAPAPXXXXXXXXGLPAISSLIGASLLSVAAYY 60
          MEMKKI C +LFAAA+++AV+A +E  APAP         LPA+ SL+GASL+S+ +YY
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 59

[Close]

BLAST of Carg07320 vs. TAIR10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1))

HSP 1 Score: 50.4 bits (119), Expect = 4.4e-07
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1  MEMKKINCAILFAAATVSAVVAHDEAAAPAP-XXXXXXXXGLPAISSLIGASLLSVAAYY 60
          MEMKKI C ++FAAA+++AV+A  E  APAP XXXXXX   +PA+ SL+GASL+S+ AYY
Sbjct: 1  MEMKKIACGVVFAAASMTAVMA-AEVGAPAPGXXXXXXSVAVPALGSLVGASLVSLFAYY 59

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BLAST of Carg07320 vs. Swiss-Prot
Match: sp|Q8S2W4|AGP23_ARATH (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-09
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1  MEMKKINCAILFAAATVSAVVAHDEAAAPAPXXXXXXXXGLPAISSLIGASLLSVAAYY 60
          MEMKKI C +LFAAA+++AV+A +E  APAP         LPA+ SL+GASL+S+ +YY
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 59

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BLAST of Carg07320 vs. TrEMBL
Match: tr|W9SPR6|W9SPR6_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000818 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.5e-09
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1  MEMKKINCAILFAAATVSAVVAHDEAAAPAPXXXXXXXXGLPAISSLIGASLLSVAAYY 60
          MEMKKI CA++FAAA+VSAV+A+D  AAPAP         LPA+ SL+GASL+S  AYY
Sbjct: 1  MEMKKIACAVIFAAASVSAVMANDAVAAPAPAPTGGTSASLPALGSLVGASLVSFVAYY 59

[Close]

BLAST of Carg07320 vs. TrEMBL
Match: tr|A0A2K2C4B1|A0A2K2C4B1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G268800v3 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1  MEMKKINCAILFAAATVSAVVAHDEAAAPAPXXXXXXXXGLPAISSLIGASLLSVAAYYF 60
          MEMKKI CAILFAAA+VSAV+A DE AAPAP         LP + SL+GASL S+ A Y 
Sbjct: 1  MEMKKIACAILFAAASVSAVMA-DEVAAPAPSPTSGASVSLPVVGSLVGASLASLIALYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 60

[Close]

BLAST of Carg07320 vs. TrEMBL
Match: tr|M4DDP3|M4DDP3_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1  MEMKKINCAILFAAATVSAVVAHDEAAAPAPXXXXXXXXGLPAISSLIGASLLSVAAYY 60
          MEMKKI C +LFAAA+++AV+A +EA APAP         LPA+ SL+GASL+S+ +YY
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAIEEAGAPAPGPASAASVALPALGSLVGASLVSLFSYY 59

[Close]

BLAST of Carg07320 vs. TrEMBL
Match: tr|A0A0D3CUE4|A0A0D3CUE4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1  MEMKKINCAILFAAATVSAVVAHDEAAAPAPXXXXXXXXGLPAISSLIGASLLSVAAYY 60
          MEMKKI C +LFAAA+++AV+A +EA APAP         LPA+ SL+GASL+S+ +YY
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAIEEAGAPAPGPASAASVALPALGSLVGASLVSLFSYY 59

[Close]

BLAST of Carg07320 vs. TrEMBL
Match: tr|A0A0D3BX83|A0A0D3BX83_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106341113 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1  MEMKKINCAILFAAATVSAVVAHDEAAAPAPXXXXXXXXGLPAISSLIGASLLSVAAYY 60
          MEMKKI C +LFAAA+++AV+A +EA APAP         LPA+ SL+GASL+S+ +YY
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAIEEAGAPAPGPASAASVALPALGSLVGASLVSLFSYY 59

The following BLAST results are available for this feature:

BLAST of Carg07320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022998512.1	1.8e-14	80.33	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
XP_022932375.1	2.9e-12	72.13	arabinogalactan peptide 23-like [Cucurbita moschata] >XP_022965239.1 arabinogala...	[more]
XP_010104709.1	1.1e-08	61.02	arabinogalactan peptide 23 [Morus notabilis] >EXC48805.1 hypothetical protein L4...	[more]
XP_022933008.1	1.2e-07	61.29	arabinogalactan peptide 23-like [Cucurbita moschata]	[more]
XP_023004714.1	1.2e-07	61.29	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]

BLAST of Carg07320 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57690.1	1.5e-10	54.24	arabinogalactan protein 23	[more]
AT2G41905.1	4.4e-07	61.67	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

BLAST of Carg07320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8S2W4\|AGP23_ARATH	2.6e-09	54.24	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Carg07320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|W9SPR6\|W9SPR6_9ROSA	7.5e-09	61.02	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000818 PE=4 SV=1	[more]
tr\|A0A2K2C4B1\|A0A2K2C4B1_POPTR	1.8e-07	62.30	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G268800v3 PE=...	[more]
tr\|M4DDP3\|M4DDP3_BRARP	2.4e-07	55.93	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]
tr\|A0A0D3CUE4\|A0A0D3CUE4_BRAOL	2.4e-07	55.93	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1	[more]
tr\|A0A0D3BX83\|A0A0D3BX83_BRAOL	2.4e-07	55.93	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10634111...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07320-RA	Carg07320-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672	FAMILY NOT NAMED	coord: 1..61

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07320	Cla017262	Watermelon (97103) v1	carwmB0759
Carg07320	Cla015230	Watermelon (97103) v1	carwmB0758
Carg07320	Csa3G697910	Cucumber (Chinese Long) v2	carcuB0779
Carg07320	ClCG10G012450	Watermelon (Charleston Gray)	carwcgB0738
Carg07320	ClCG09G004270	Watermelon (Charleston Gray)	carwcgB0736
Carg07320	CSPI03G29740	Wild cucumber (PI 183967)	carcpiB0797
Carg07320	CmaCh14G010100	Cucurbita maxima (Rimu)	carcmaB1057
Carg07320	CmoCh08G005280	Cucurbita moschata (Rifu)	carcmoB1034
Carg07320	CmoCh14G010270	Cucurbita moschata (Rifu)	carcmoB1031
Carg07320	Lsi02G025850	Bottle gourd (USVL1VR-Ls)	carlsiB697
Carg07320	Cp4.1LG03g04480	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07320	Cp4.1LG17g08160	Cucurbita pepo (Zucchini)	carcpeB1071
Carg07320	Cp4.1LG02g15560	Cucurbita pepo (Zucchini)	carcpeB1072
Carg07320	CsGy3G027580	Cucumber (Gy14) v2	carcgybB0756
Carg07320	CsaV3_3G032220	Cucumber (Chinese Long) v3	carcucB0800

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07320	Carg13451	Silver-seed gourd	carcarB453
Carg07320	Carg11226	Silver-seed gourd	carcarB605

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07320	Cucurbita maxima (Rimu)	carcmaB1058
Carg07320	Cucurbita maxima (Rimu)	carcmaB1059
Carg07320	Cucurbita maxima (Rimu)	carcmaB1060
Carg07320	Cucurbita moschata (Rifu)	carcmoB1032
Carg07320	Cucurbita moschata (Rifu)	carcmoB1033
Carg07320	Cucurbita pepo (Zucchini)	carcpeB1070
Carg07320	Wild cucumber (PI 183967)	carcpiB0801
Carg07320	Cucumber (Chinese Long) v2	carcuB0783
Carg07320	Cucumber (Chinese Long) v3	carcucB0804
Carg07320	Bottle gourd (USVL1VR-Ls)	carlsiB699
Carg07320	Melon (DHL92) v3.5.1	carmeB0753
Carg07320	Melon (DHL92) v3.5.1	carmeB0755
Carg07320	Melon (DHL92) v3.6.1	carmedB0770
Carg07320	Melon (DHL92) v3.6.1	carmedB0768
Carg07320	Watermelon (Charleston Gray)	carwcgB0735
Carg07320	Watermelon (97103) v1	carwmB0757
Carg07320	Watermelon (97103) v2	carwmbB0794
Carg07320	Watermelon (97103) v2	carwmbB0796
Carg07320	Watermelon (97103) v2	carwmbB0798
Carg07320	Wax gourd	carwgoB0894
Carg07320	Wax gourd	carwgoB0898
Carg07320	Silver-seed gourd	carcarB382
Carg07320	Cucumber (Gy14) v2	carcgybB0760
Carg07320	Cucumber (Gy14) v1	carcgyB0862